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{{UBERON
{{UBERON
|id=UBERON:0006562
|alt_id=
|name=pharynx
|namespace=
|def="The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465]
|xref=AAO:0000967;;FBbt:00005380;;MAT:0000049;;MIAA:0000049;;SCTID:181211006;;WBbt:0003681
|is_a=UBERON:0004921
|synonym=
|comment=Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises
|comment=Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465]
|subset=grouping_class;;uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006562
|is_a=UBERON:0004921
|is_obsolete=
|located_in=
|located_in=
|name=pharynx
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string
|subset=grouping_class;;uberon_slim
|synonym=
|union_of=
|xref=AAO:0000967;;FBbt:00005380;;MAT:0000049;;MIAA:0000049;;SCTID:181211006;;WBbt:0003681
}}
}}

Latest revision as of 17:58, 12 September 2014

Name:pharynx
Namespace:FANTOM
Definition:"The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465]
Xrefs:
links:

AAO:0000967
FBbt:00005380
MAT:0000049
MIAA:0000049
SCTID:181211006

WBbt:0003681
Comments:Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises
Subset: grouping_class
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004921(subdivision of digestive tract)



Children

is a:UBERON:0001042 (chordate pharynx)
derives from:FF:0100819 (pharyngeal cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006562 (pharynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.66e-65FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_49425d71fafd36db3d6fed7f27463755p4@uc009bpa.1
1.66e-65FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_49425d71fafd36db3d6fed7f27463755p4@uc009bpa.1
1.86e-64FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_f39a541f5bb956467989af9577d8b75dp8@uc009bpa.1
1.86e-64FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_f39a541f5bb956467989af9577d8b75dp8@uc009bpa.1
8.23e-63FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_3f4b24c552d9f16ee3f1aa436251b1bbp1@ENSMUST00000103288, p1@uc009bpl.1
8.23e-63FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_3f4b24c552d9f16ee3f1aa436251b1bbp1@ENSMUST00000103288, p1@uc009bpl.1
1.32e-61FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_e921484b91ef74a4a952b3c1f4317d77p@chr6:41491752..41491776, -
1.32e-61FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_e921484b91ef74a4a952b3c1f4317d77p@chr12:108361918..108361930, -
1.32e-61FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_e921484b91ef74a4a952b3c1f4317d77p@chr6:41491752..41491776, -
1.32e-61FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_e921484b91ef74a4a952b3c1f4317d77p@chr12:108361918..108361930, -
2.27e-60FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_3ada883b8894c62a8bec1db9e663870dp2@ENSMUST00000103283
2.27e-60FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_3ada883b8894c62a8bec1db9e663870dp2@ENSMUST00000103283
2.83e-60FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_1da6a25d0e8d0fc0908fc85aa0c8e4b8p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
2.83e-60FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_1da6a25d0e8d0fc0908fc85aa0c8e4b8p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
3.96e-59FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_54754195d70620c76669b632c1d6e6b7p@chr9:44807434..44807445, -
3.96e-59FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_54754195d70620c76669b632c1d6e6b7p@chr9:44807434..44807445, -
4.91e-59FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_a5b6c9c5f2dd97b6eed788f277cd4497p@chr6:41494001..41494028, +
4.91e-59FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_a5b6c9c5f2dd97b6eed788f277cd4497p@chr6:41494001..41494028, +
1.18e-58FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_6e4360c4d784533963e7e5e7025e59f4p@chr9:44809185..44809215, -
1.18e-58FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_6e4360c4d784533963e7e5e7025e59f4p@chr9:44809185..44809215, -
1.22e-58FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_f4ebcda05f98d20221250dd5147dcb88p11@Prkcq
1.22e-58FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_f4ebcda05f98d20221250dd5147dcb88p11@Prkcq
3.55e-58FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_10f96d56ad4afa00bbd163097f8ace02p@chr14:54791784..54791787, +
3.55e-58FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_10f96d56ad4afa00bbd163097f8ace02p@chr14:54791784..54791787, +
6.17e-58FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_3d72901305244bb38c15911d44ce2560p1@ENSMUST00000103263
6.17e-58FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_3d72901305244bb38c15911d44ce2560p1@ENSMUST00000103263
1.17e-57FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_88cc903171308355e7c6c76e62d8c62ep5@Themis
1.17e-57FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_88cc903171308355e7c6c76e62d8c62ep5@Themis
1.36e-57FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_83bd00efb33fb970e35573dfa7f101b2p5@uc009bpa.1
1.36e-57FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_83bd00efb33fb970e35573dfa7f101b2p5@uc009bpa.1
1.46e-57FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_f66bffe4adccfa20b27dc34a407d4645p@chr9:44793518..44793537, +
1.46e-57FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_f66bffe4adccfa20b27dc34a407d4645p@chr9:44793518..44793537, +
1.87e-57FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_e7cd7f8eac81819493cd007585399d9bp@chr6:41071548..41071565, +
1.87e-57FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_e7cd7f8eac81819493cd007585399d9bp@chr6:41071548..41071565, +
3.74e-57FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_e7189c9c6ab3ac2c6608c650744a6c58p2@uc009bnp.1, p2@uc012eki.1
3.74e-57FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_e7189c9c6ab3ac2c6608c650744a6c58p2@uc009bnp.1, p2@uc012eki.1
2.11e-56FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_a2e1560e323b9e285b04258308fb0915p5@Tcf7
2.11e-56FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_a2e1560e323b9e285b04258308fb0915p5@Tcf7
7.76e-56FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_ae72c97c310d2af44131d5f3158e6a8bp@chr14:61328148..61328173, +
7.76e-56FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_ae72c97c310d2af44131d5f3158e6a8bp@chr14:61328148..61328173, +
1.22e-55FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_778f341df1da8a9cb7777667e466d9e1p2@uc009bpa.1
1.22e-55FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_778f341df1da8a9cb7777667e466d9e1p2@uc009bpa.1
1.4e-55FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_1c1eb623433fe781d0c17256e3889eacp2@Sh2d1a
1.4e-55FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_1c1eb623433fe781d0c17256e3889eacp2@Sh2d1a
2.37e-55FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_4839a7fa18371fbac588307e67ab956dp1@uc012ekr.1
2.37e-55FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_4839a7fa18371fbac588307e67ab956dp1@uc012ekr.1
2.97e-55FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_a7779aa3d215f00c7e121f18bd6c9ccdp2@1810009J06Rik
2.97e-55FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_a7779aa3d215f00c7e121f18bd6c9ccdp2@1810009J06Rik
4.31e-55FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_ecdbe70ce79a4f17490ce1900a150cdep1@uc012ekk.1
4.31e-55FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_ecdbe70ce79a4f17490ce1900a150cdep1@uc012ekk.1
5.01e-55FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_3494bdc10dbefe970bbec5a46bd664d2p3@uc009bpo.1, p3@uc009bpp.1
5.01e-55FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_3494bdc10dbefe970bbec5a46bd664d2p3@uc009bpo.1, p3@uc009bpp.1
5.01e-55FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_3494bdc10dbefe970bbec5a46bd664d2p1@ENSMUST00000103265
5.01e-55FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_3494bdc10dbefe970bbec5a46bd664d2p1@ENSMUST00000103265
1.07e-54FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_c93c77dd6b35f9b5cf3949c5033d4e30p@chr7:133512043..133512060, -
1.07e-54FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_c93c77dd6b35f9b5cf3949c5033d4e30p@chr7:133512043..133512060, -
1.32e-54FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_05a5bee7b845e18e60768be8e86c6502p2@Gm5409
1.32e-54FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_05a5bee7b845e18e60768be8e86c6502p2@Gm5409
2.0e-54FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_8317f74d1fe3bf202e496c3dfa817353p5@Trat1
2.0e-54FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_8317f74d1fe3bf202e496c3dfa817353p5@Trat1
2.16e-54FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_d7179257716c96c15b0f5c5a355faa25p19@AMOTL1
2.16e-54FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_d7179257716c96c15b0f5c5a355faa25p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
2.16e-54FFCP PHASE2:Hg19::chr21:42749543..42749555,+#_d7179257716c96c15b0f5c5a355faa25p@chr21:42749543..42749555, +
2.16e-54FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_d7179257716c96c15b0f5c5a355faa25p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
2.16e-54FFCP PHASE1:Hg19::chr21:42749543..42749555,+#_d7179257716c96c15b0f5c5a355faa25p@chr21:42749543..42749555, +
2.16e-54FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_d7179257716c96c15b0f5c5a355faa25p19@AMOTL1
2.2e-54FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_4de3a11bbde59c85a415b3ea37c652aep4@Trat1
2.2e-54FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_4de3a11bbde59c85a415b3ea37c652aep4@Trat1
2.23e-54FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_5964c7f32024816a9427526fbe412497p@chr6:41489240..41489252, +
2.23e-54FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_5964c7f32024816a9427526fbe412497p@chr6:41489240..41489252, +
4.16e-54FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_2b5100fd979d95bfe016c1f24e78c6c2p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
4.16e-54FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_2b5100fd979d95bfe016c1f24e78c6c2p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
4.37e-54FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_d5440fc9bf2872a6ead69664fe4802c1p@chr6:41494376..41494389, -
4.37e-54FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_d5440fc9bf2872a6ead69664fe4802c1p1@ENSMUST00000103282
4.37e-54FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_d5440fc9bf2872a6ead69664fe4802c1p@chr6:41494376..41494389, -
4.37e-54FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_d5440fc9bf2872a6ead69664fe4802c1p1@ENSMUST00000103282
5.42e-54FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_09e23114ba1902bd1a346573b65a0302p1@ENSMUST00000103298, p1@uc009bpy.1
5.42e-54FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_09e23114ba1902bd1a346573b65a0302p1@ENSMUST00000103298, p1@uc009bpy.1
5.43e-54FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_b7e58aadeb503493f9dc97569ea47bcfp@chr14:54794540..54794554, +
5.43e-54FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_b7e58aadeb503493f9dc97569ea47bcfp@chr14:54794540..54794554, +
5.9e-54FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_f589cb55d8dffce7cbb8f60d840818c4p@chr14:54496363..54496388, +
5.9e-54FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_f589cb55d8dffce7cbb8f60d840818c4p@chr6:41491801..41491815, -
5.9e-54FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_f589cb55d8dffce7cbb8f60d840818c4p@chr6:41491801..41491815, -
5.9e-54FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_f589cb55d8dffce7cbb8f60d840818c4p@chr14:54496363..54496388, +
6.18e-54FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_d4631a5c2bc91fb24c9d4b83d84953adp@chr6:41492643..41492662, +
6.18e-54FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_d4631a5c2bc91fb24c9d4b83d84953adp@chr6:41492643..41492662, +
6.96e-54FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_50ecfdf11c5f60a15d0d8bc8698e3eb7p1@Il13
6.96e-54FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_50ecfdf11c5f60a15d0d8bc8698e3eb7p1@Il13
7.53e-54FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_82f4f67521de0a79a19be71767ba5024p@chr6:41492605..41492621, +
7.53e-54FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_82f4f67521de0a79a19be71767ba5024p@chr6:41492605..41492621, +
7.54e-54FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_b71b4593a721009088df22331daa3140p7@Lat
7.54e-54FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_b71b4593a721009088df22331daa3140p7@Lat
8.18e-54FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_af305a5bee2e856ca71757be72c7e88ep@chr6:41138311..41138333, +
8.18e-54FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_af305a5bee2e856ca71757be72c7e88ep@chr6:41138311..41138333, +
1.05e-53FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_26e7a7851c8ae3d0e03b1779c67e11a4p5@uc009bnp.1, p5@uc012eki.1
1.05e-53FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_26e7a7851c8ae3d0e03b1779c67e11a4p5@uc009bnp.1, p5@uc012eki.1
1.16e-53FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_21aa7c8a8c0930465245bd5a1d382439p@chr4:125978325..125978339, -
1.16e-53FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_21aa7c8a8c0930465245bd5a1d382439p8@Lat
1.16e-53FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_21aa7c8a8c0930465245bd5a1d382439p6@uc009bpa.1
1.16e-53FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_21aa7c8a8c0930465245bd5a1d382439p@chr4:125978325..125978339, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0006562&oldid=3277857"