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{{UBERON
{{UBERON
|id=UBERON:0005882
|alt_id=
|name=alar plate
|namespace=
|def="the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord." [MP:0009692, Wikipedia:Alar_plate]
|xref=
|is_a=UBERON:0005423
|synonym="alar lamina" RELATED [Wikipedia:Alar_lamina];;"spinal cord alar column" EXACT [MP:0009692];;"spinal cord alar lamina" EXACT [MP:0009692]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses." [MP:0009692, Wikipedia:Alar_plate]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005882
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000922;;UBERON:0001049
|name=neural tube alar plate
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004061
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="alar lamina" RELATED [Wikipedia:Alar_lamina];;"lamina alaris" RELATED [Wikipedia:Alar_lamina];;"lamina dorsolateralis" RELATED [Wikipedia:Alar_lamina];;"lamina dorsolateralis; lamina alaris" RELATED LATIN [Wikipedia:Alar_plate]
|union_of=
|xref=http://upload.wikimedia.org/wikipedia/commons/2/29/Gray646.png
}}
}}

Latest revision as of 17:55, 12 September 2014

Name:neural tube alar plate
Namespace:FANTOM
Definition:"the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses." [MP:0009692, Wikipedia:Alar_plate]
Xrefs:
links:
[ Gray646.png Gray646.png]
Synonyms: "alar lamina" RELATED [Wikipedia:Alar_lamina]
"lamina alaris" RELATED [Wikipedia:Alar_lamina]
"lamina dorsolateralis" RELATED [Wikipedia:Alar_lamina]
"lamina dorsolateralis; lamina alaris" RELATED LATIN [Wikipedia:Alar_plate]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0004061(neural tube mantle layer)



Children

develops from:UBERON:0002314 (midbrain tectum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005882 (neural tube alar plate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.47e-44FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_f67d635f5db3c21423e5967964bf235ap@chr1:158200818..158200829, -
7.47e-44FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_f67d635f5db3c21423e5967964bf235ap@chr1:158200818..158200829, -
2.87e-30FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_3186927f45dd50e1727453b8fdee8dc1p@chr15:22719411..22719436, +
2.87e-30FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_3186927f45dd50e1727453b8fdee8dc1p19@Rgs8
2.87e-30FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_3186927f45dd50e1727453b8fdee8dc1p@chr15:22719411..22719436, +
2.87e-30FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_3186927f45dd50e1727453b8fdee8dc1p19@Rgs8
3.06e-23FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_05fd140d4ea80ef2e3abda0e51425388p@chr2:127098489..127098493, -
3.06e-23FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_05fd140d4ea80ef2e3abda0e51425388p@chr2:127098489..127098493, -
5.07e-23FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr2:158208771..158208772, +
5.07e-23FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr2:158208771..158208772, +
5.07e-23FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr16:96721083..96721092, +
5.07e-23FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr16:96721083..96721092, +
8.39e-23FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_ad5b694dddb2697c6cb753cdb48bb331p1@ENSMUST00000157206
8.39e-23FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_ad5b694dddb2697c6cb753cdb48bb331p1@ENSMUST00000157206
1.39e-22FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_4da087f05866eb6401eb25d85b06361ep7@Adipor2
1.39e-22FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_4da087f05866eb6401eb25d85b06361ep7@Adipor2
5.15e-19FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_5c68ddc8bc3bab1dbb26bb7c7dbd4176p@chr14:52528327..52528336, -
5.15e-19FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_5c68ddc8bc3bab1dbb26bb7c7dbd4176p@chr14:52528327..52528336, -
7.74e-19FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_0cb0591ddffc5e701c1a1fd02a54d1c5p@chr19:32177340..32177351, -
7.74e-19FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_0cb0591ddffc5e701c1a1fd02a54d1c5p@chr19:32177340..32177351, -
1.16e-18FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_3cd590d293544011751c7b1cb5809670p@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_3cd590d293544011751c7b1cb5809670p@chr4:98216369..98216408, +
1.16e-18FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_3cd590d293544011751c7b1cb5809670p@chr4:98216369..98216408, +
1.16e-18FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_3cd590d293544011751c7b1cb5809670p@chr4:83035887..83035924, -
1.74e-18FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_9a994076ebe7c8a3941ab7f0a3df38b5p@chr8:123151369..123151375, +
1.74e-18FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_9a994076ebe7c8a3941ab7f0a3df38b5p@chr8:123151369..123151375, +
2.59e-18FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_386e7db4a73736247585c6b8373a9dfdp@chr8:108091532..108091548, -
2.59e-18FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_386e7db4a73736247585c6b8373a9dfdp@chr5:128949415..128949424, +
2.59e-18FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_386e7db4a73736247585c6b8373a9dfdp@chr5:128949415..128949424, +
2.59e-18FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_386e7db4a73736247585c6b8373a9dfdp3@Prmt7
2.59e-18FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_386e7db4a73736247585c6b8373a9dfdp3@Prmt7
2.59e-18FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_386e7db4a73736247585c6b8373a9dfdp@chr8:108091532..108091548, -
6.79e-16FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_2486390bc7ce34429732646f149a1846p@chr1:101686777..101686780, +
6.79e-16FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_2486390bc7ce34429732646f149a1846p@chr1:101686777..101686780, +
9.51e-16FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_ebd062faa79201fa15f934b1c1ababb2p3@Ninj2
9.51e-16FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_ebd062faa79201fa15f934b1c1ababb2p@chr17:69476739..69476749, +
9.51e-16FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_ebd062faa79201fa15f934b1c1ababb2p@chr17:69476739..69476749, +
9.51e-16FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_ebd062faa79201fa15f934b1c1ababb2p6@Ptprr
9.51e-16FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_ebd062faa79201fa15f934b1c1ababb2p9@Clasp2
9.51e-16FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_ebd062faa79201fa15f934b1c1ababb2p6@Ptprr
9.51e-16FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_ebd062faa79201fa15f934b1c1ababb2p3@Ninj2
9.51e-16FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_ebd062faa79201fa15f934b1c1ababb2p9@Clasp2
1.33e-15FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_9f702ba925ddde8d5bfc2e8bc8f0a417p19@Gas7
1.33e-15FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_9f702ba925ddde8d5bfc2e8bc8f0a417p19@Gas7
1.86e-15FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr14:33139881..33139891, +
1.86e-15FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr17:8492594..8492603, -
1.86e-15FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr19:47099743..47099759, +
1.86e-15FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr14:33139881..33139891, +
1.86e-15FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr10:111706834..111706844, +
1.86e-15FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp15@Ccdc92
1.86e-15FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr11:55886412..55886420, +
1.86e-15FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr11:55886412..55886420, +
1.86e-15FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr10:111706834..111706844, +
1.86e-15FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr17:8492594..8492603, -
1.86e-15FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr19:47099743..47099759, +
1.86e-15FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp15@Ccdc92
3.62e-14FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_23035eaa9c3de461afea0e2f80d4add5p63@Tcf7l2
3.62e-14FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_23035eaa9c3de461afea0e2f80d4add5p63@Tcf7l2
3.62e-14FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_23035eaa9c3de461afea0e2f80d4add5p@chr16:96720848..96720858, +
3.62e-14FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_23035eaa9c3de461afea0e2f80d4add5p@chr16:96720848..96720858, +
4.85e-14FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_ef50817acc3c71b02705021899993ff9p@chr14:93478934..93478944, -
4.85e-14FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_ef50817acc3c71b02705021899993ff9p@chr14:93478934..93478944, -
6.5e-14FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_ca3f2ed6fc3043fd75f9de2b3a37396cp2@Ghrh
6.5e-14FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_ca3f2ed6fc3043fd75f9de2b3a37396cp2@Ghrh
8.69e-14FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_5bb4290c95efab3d6c117825f55c9188p@chr2:31133553..31133564, +
8.69e-14FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_5bb4290c95efab3d6c117825f55c9188p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_5bb4290c95efab3d6c117825f55c9188p8@St18
8.69e-14FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_5bb4290c95efab3d6c117825f55c9188p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_5bb4290c95efab3d6c117825f55c9188p@chr2:31133553..31133564, +
8.69e-14FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_5bb4290c95efab3d6c117825f55c9188p7@Fam169a
8.69e-14FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_5bb4290c95efab3d6c117825f55c9188p8@St18
8.69e-14FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_5bb4290c95efab3d6c117825f55c9188p7@Fam169a
1.16e-13FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr2:163149068..163149077, +
1.16e-13FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_24f5cde9bd4a1fd0f5285919f035a7b8p9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr2:163149068..163149077, +
1.16e-13FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_24f5cde9bd4a1fd0f5285919f035a7b8p9@Oprm1
1.55e-13FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_7314dece29173a04f757c285349eaee0p5@Rnf34
1.55e-13FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_7314dece29173a04f757c285349eaee0p6@Skp1a
1.55e-13FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_7314dece29173a04f757c285349eaee0p5@Rnf34
1.55e-13FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_7314dece29173a04f757c285349eaee0p6@Skp1a
2.06e-13FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_3ae46de9568193625b971ada0cc79aa9p@chr6:126588640..126588687, -
2.06e-13FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_3ae46de9568193625b971ada0cc79aa9p@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_3ae46de9568193625b971ada0cc79aa9p6@Ap2a1
2.06e-13FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_3ae46de9568193625b971ada0cc79aa9p@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_3ae46de9568193625b971ada0cc79aa9p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_3ae46de9568193625b971ada0cc79aa9p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_3ae46de9568193625b971ada0cc79aa9p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_3ae46de9568193625b971ada0cc79aa9p6@Ap2a1
2.06e-13FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_3ae46de9568193625b971ada0cc79aa9p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_3ae46de9568193625b971ada0cc79aa9p@chr6:126588640..126588687, -
1.2e-12FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_fd6ddc727bfbc957428ee93e2d09742fp3@Rgs17
1.2e-12FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_fd6ddc727bfbc957428ee93e2d09742fp3@Rgs17
2.01e-12FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_29fb0a70c5268618757374530faec956p14@Fbxo7
2.01e-12FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_29fb0a70c5268618757374530faec956p1@ENSMUST00000124586
2.01e-12FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_29fb0a70c5268618757374530faec956p14@Fbxo7
2.01e-12FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_29fb0a70c5268618757374530faec956p1@ENSMUST00000124586

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