UBERON:0005174: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005174
|name=back organ
|namespace=
|def="An organ that is part of a back [Obol]." [OBOL:automatic]
|xref=MA:0001901
|is_a=UBERON:0005177
|synonym=...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="An organ that is part of a back [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005174 | |||
|is_a=UBERON:0000062 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=dorsal region element | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001137 | |part_of=UBERON:0001137 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset=organ_slim | |||
|synonym= | |||
|union_of= | |||
|xref=MA:0001901 | |||
}} | }} | ||
Latest revision as of 17:51, 12 September 2014
| Name: | dorsal region element | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An organ that is part of a back [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Subset: | organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000062(organ) |
|---|---|
| part_of: | UBERON:0001137(dorsum) |
Children
| is a: | UBERON:0002240 (spinal cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10056-101H2 (spinal cord, fetal, donor1)
- 10159-103A6 (spinal cord, adult, donor10252)
- 10181-103D1 (spinal cord - adult, donor10196)
- 10359-105E8 (spinal cord, newborn, donor10223)
- 10369-105F9 (spinal cord, adult, donor10258)
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
- 11720-123D1 (Mouse Neurons - dorsal spinal cord, donor1)
- 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
- 11738-123F1 (Mouse Neurons - dorsal spinal cord, donor2)
... further results Mouse (Mus musculus)
- 10056-101H2 (spinal cord, fetal, donor1)
- 10159-103A6 (spinal cord, adult, donor10252)
- 10181-103D1 (spinal cord - adult, donor10196)
- 10359-105E8 (spinal cord, newborn, donor10223)
- 10369-105F9 (spinal cord, adult, donor10258)
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
- 11720-123D1 (Mouse Neurons - dorsal spinal cord, donor1)
- 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
- 11738-123F1 (Mouse Neurons - dorsal spinal cord, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005174 (dorsal region element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.98e-131 | FFCP PHASE1:Hg19::chr8:131864839..131864841,+#_b314b229517c1661016074638026fc07 | p@chr8:131864839..131864841, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr8:131864839..131864841,+#_b314b229517c1661016074638026fc07 | p@chr8:131864839..131864841, + |
| 3.04e-85 | FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_b987726ea365bf1ad8164a3fff73a378 | p@chr17:42993851..42993858, - |
| 3.04e-85 | FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_b987726ea365bf1ad8164a3fff73a378 | p@chr17:42993851..42993858, - |
| 4.06e-85 | FFCP PHASE2:Hg19::chr17:42993904..42993912,-#_656c1d066c497821deb1a98dbe921f16 | p@chr17:42993904..42993912, - |
| 4.06e-85 | FFCP PHASE1:Hg19::chr17:42993904..42993912,-#_656c1d066c497821deb1a98dbe921f16 | p@chr17:42993904..42993912, - |
| 4.03e-84 | FFCP PHASE1:Hg19::chr13:109248336..109248343,+#_13c91baf63a1de82ae71a6a623be6637 | p7@MYO16 |
| 4.03e-84 | FFCP PHASE2:Hg19::chr13:109248336..109248343,+#_13c91baf63a1de82ae71a6a623be6637 | p7@MYO16 |
| 4.55e-74 | FFCP PHASE1:Hg19::chr1:161274636..161274641,-#_bf299c5d88dda1752977a0cc528cf1c8 | p@chr1:161274636..161274641, - |
| 4.55e-74 | FFCP PHASE2:Hg19::chr1:161274636..161274641,-#_bf299c5d88dda1752977a0cc528cf1c8 | p@chr1:161274636..161274641, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_1bbde9f40932d6215a0c1b011a8e5444 | p@chr18:84268738..84268777, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_1bbde9f40932d6215a0c1b011a8e5444 | p@chr11:96608388..96608420, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_1bbde9f40932d6215a0c1b011a8e5444 | p@chr11:96608388..96608420, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_1bbde9f40932d6215a0c1b011a8e5444 | p@chr18:84268738..84268777, - |
| 2.48e-72 | FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_1bbde9f40932d6215a0c1b011a8e5444 | p@chr2:70053872..70053879, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_1bbde9f40932d6215a0c1b011a8e5444 | p3@Prrxl1 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_1bbde9f40932d6215a0c1b011a8e5444 | p3@Prrxl1 |
| 2.48e-72 | FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_1bbde9f40932d6215a0c1b011a8e5444 | p@chr2:70053872..70053879, + |
| 9.82e-67 | FFCP PHASE1:Hg19::chrX:100489588..100489605,+#_22c040860e826e325e6ffb682c68d540 | p@chrX:100489588..100489605, + |
| 9.82e-67 | FFCP PHASE2:Hg19::chrX:100489588..100489605,+#_22c040860e826e325e6ffb682c68d540 | p@chrX:100489588..100489605, + |
| 9.82e-67 | FFCP PHASE1:Hg19::chr16:19800150..19800179,+#_22c040860e826e325e6ffb682c68d540 | p@chr16:19800150..19800179, + |
| 9.82e-67 | FFCP PHASE2:Hg19::chr16:19800150..19800179,+#_22c040860e826e325e6ffb682c68d540 | p@chr16:19800150..19800179, + |
| 1.54e-66 | FFCP PHASE1:Hg19::chr11:58390160..58390175,+#_c5adbb46d1b8f1f59e695f94c1ad010f | p2@CNTF |
| 1.54e-66 | FFCP PHASE2:Hg19::chr11:58390160..58390175,+#_c5adbb46d1b8f1f59e695f94c1ad010f | p2@CNTF |
| 1.71e-66 | FFCP PHASE2:Hg19::chr15:46702462..46702465,+#_0e211efbe32974ecdad524a3e664ce7f | p@chr15:46702462..46702465, + |
| 1.71e-66 | FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_0e211efbe32974ecdad524a3e664ce7f | p@chr1:161275096..161275109, - |
| 1.71e-66 | FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_0e211efbe32974ecdad524a3e664ce7f | p@chr1:161275096..161275109, - |
| 1.71e-66 | FFCP PHASE1:Hg19::chr15:46702462..46702465,+#_0e211efbe32974ecdad524a3e664ce7f | p@chr15:46702462..46702465, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:60460743..60460750,+#_55a9c066e247aca47cb988605b694497 | p@chr1:60460743..60460750, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr17:42984119..42984130,-#_55a9c066e247aca47cb988605b694497 | p43@GFAP |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:60460743..60460750,+#_55a9c066e247aca47cb988605b694497 | p@chr1:60460743..60460750, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr17:42984119..42984130,-#_55a9c066e247aca47cb988605b694497 | p43@GFAP |
| 3.35e-66 | FFCP PHASE2:Hg19::chr17:42983263..42983264,-#_c66670520ed7a19ca2a151460f2c7d27 | p@chr17:42983263..42983264, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr17:42983263..42983264,-#_c66670520ed7a19ca2a151460f2c7d27 | p@chr17:42983263..42983264, - |
| 1.35e-65 | FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_6d9aab03e6f9c997b0b4a7be84d4aa42 | p4@Hoxb9 |
| 1.35e-65 | FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_6d9aab03e6f9c997b0b4a7be84d4aa42 | p4@Hoxb9 |
| 1.71e-64 | FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_0f7e2a949aa89086542107634879e64c | p6@Slc6a5 |
| 1.71e-64 | FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_0f7e2a949aa89086542107634879e64c | p6@Slc6a5 |
| 2.34e-60 | FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_52b3db527fd5305eadaa1b3ce40b434e | p6@Hoxb8 |
| 2.34e-60 | FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_52b3db527fd5305eadaa1b3ce40b434e | p6@Hoxb8 |
| 9.99e-60 | FFCP PHASE2:Hg19::chr18:77014816..77014819,-#_a3d50eaf82bf9df66412a0fa961fadb2 | p@chr18:77014816..77014819, - |
| 9.99e-60 | FFCP PHASE1:Hg19::chr18:77014816..77014819,-#_a3d50eaf82bf9df66412a0fa961fadb2 | p@chr18:77014816..77014819, - |
| 4.07e-59 | FFCP PHASE2:Hg19::chr16:74808506..74808519,-#_7a4e6fec3e79f894e73b5fcafdf797be | p4@FA2H |
| 4.07e-59 | FFCP PHASE1:Hg19::chr16:74808506..74808519,-#_7a4e6fec3e79f894e73b5fcafdf797be | p4@FA2H |
| 6.9e-59 | FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_0979982f03a69b652b7d3d12e683473a | p3@Tlx3 |
| 6.9e-59 | FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_0979982f03a69b652b7d3d12e683473a | p3@Tlx3 |
| 1.09e-58 | FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_8b7df3627ca237edf6acd47124f833c4 | p1@Uts2 |
| 1.09e-58 | FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_8b7df3627ca237edf6acd47124f833c4 | p1@Uts2 |
| 1.36e-58 | FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_51c08a211a144a71473ed83bf841f7d9 | p@chr11:96146541..96146544, + |
| 1.36e-58 | FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_51c08a211a144a71473ed83bf841f7d9 | p@chr11:96146541..96146544, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_91647eebd5ac2fae6d31824e84b13f24 | p@chr11:96148092..96148105, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_91647eebd5ac2fae6d31824e84b13f24 | p@chr11:96148092..96148105, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_91647eebd5ac2fae6d31824e84b13f24 | p13@Grm5 |
| 3.91e-58 | FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_91647eebd5ac2fae6d31824e84b13f24 | p13@Grm5 |
| 2.88e-55 | FFCP PHASE2:Hg19::chr6:133424178..133424190,-#_11ff90c3062b533d9fff87b75186daf4 | p@chr6:133424178..133424190, - |
| 2.88e-55 | FFCP PHASE1:Hg19::chr6:133424178..133424190,-#_11ff90c3062b533d9fff87b75186daf4 | p@chr6:133424178..133424190, - |
| 4.17e-55 | FFCP PHASE2:Hg19::chrX:100489564..100489583,+#_e4074e9043cc41fb501c0cd7bbd13933 | p@chrX:100489564..100489583, + |
| 4.17e-55 | FFCP PHASE1:Hg19::chrX:100489564..100489583,+#_e4074e9043cc41fb501c0cd7bbd13933 | p@chrX:100489564..100489583, + |
| 4.17e-55 | FFCP PHASE2:Hg19::chr1:161275189..161275203,-#_e4074e9043cc41fb501c0cd7bbd13933 | p@chr1:161275189..161275203, - |
| 4.17e-55 | FFCP PHASE1:Hg19::chr1:161275189..161275203,-#_e4074e9043cc41fb501c0cd7bbd13933 | p@chr1:161275189..161275203, - |
| 7.24e-55 | FFCP PHASE1:Hg19::chr17:42983316..42983326,-#_96f1386155829162fc93c6f8e8e5714b | p@chr17:42983316..42983326, - |
| 7.24e-55 | FFCP PHASE2:Hg19::chr17:42983316..42983326,-#_96f1386155829162fc93c6f8e8e5714b | p@chr17:42983316..42983326, - |
| 1.81e-54 | FFCP PHASE1:Hg19::chr1:161275111..161275127,-#_ecb66784ad8baccbcf42fd02a851d641 | p@chr1:161275111..161275127, - |
| 1.81e-54 | FFCP PHASE2:Hg19::chr2:27073036..27073042,-#_ecb66784ad8baccbcf42fd02a851d641 | p@chr2:27073036..27073042, - |
| 1.81e-54 | FFCP PHASE1:Hg19::chr2:27073036..27073042,-#_ecb66784ad8baccbcf42fd02a851d641 | p@chr2:27073036..27073042, - |
| 1.81e-54 | FFCP PHASE2:Hg19::chr1:161275111..161275127,-#_ecb66784ad8baccbcf42fd02a851d641 | p@chr1:161275111..161275127, - |
| 2.19e-53 | FFCP PHASE2:Hg19::chr14:36367955..36367964,+#_3081f302aff9f98df26e9b02a839dc23 | p@chr14:36367955..36367964, + |
| 2.19e-53 | FFCP PHASE1:Hg19::chr14:36367955..36367964,+#_3081f302aff9f98df26e9b02a839dc23 | p@chr14:36367955..36367964, + |
| 2.97e-53 | FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_e8a213fc550135cdb1fe9bb1ae0b172c | p1@Gbx1 |
| 2.97e-53 | FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_e8a213fc550135cdb1fe9bb1ae0b172c | p1@Gbx1 |
| 3.75e-53 | FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_4a4c496de3215ef53602c51b8dccfbe5 | p@chr11:114146042..114146050, - |
| 3.75e-53 | FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_4a4c496de3215ef53602c51b8dccfbe5 | p@chr11:114146042..114146050, - |
| 4.89e-53 | FFCP PHASE1:Hg19::chr16:7137754..7137799,+#_7e71889ceda8c42f4f8abe5c842b36e0 | p@chr16:7137754..7137799, + |
| 4.89e-53 | FFCP PHASE2:Hg19::chr16:7137754..7137799,+#_7e71889ceda8c42f4f8abe5c842b36e0 | p@chr16:7137754..7137799, + |
| 4.89e-53 | FFCP PHASE2:Hg19::chr1:167905363..167905364,-#_7e71889ceda8c42f4f8abe5c842b36e0 | p12@BRP44 |
| 4.89e-53 | FFCP PHASE1:Hg19::chr1:167905363..167905364,-#_7e71889ceda8c42f4f8abe5c842b36e0 | p12@BRP44 |
| 6.39e-53 | FFCP PHASE2:Hg19::chr11:119999153..119999163,-#_6785e421238da353b9644ce531eea1fd | p24@TRIM29 |
| 6.39e-53 | FFCP PHASE1:Hg19::chr11:119999153..119999163,-#_6785e421238da353b9644ce531eea1fd | p24@TRIM29 |
| 6.39e-53 | FFCP PHASE1:Hg19::chr6:151054827..151054836,+#_6785e421238da353b9644ce531eea1fd | p23@PLEKHG1 |
| 6.39e-53 | FFCP PHASE2:Hg19::chr6:151054827..151054836,+#_6785e421238da353b9644ce531eea1fd | p23@PLEKHG1 |
| 1.99e-52 | FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_6a8af3b983821ab0a3a5f4a67147c64c | p@chr2:74530108..74530131, + |
| 1.99e-52 | FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_6a8af3b983821ab0a3a5f4a67147c64c | p8@Hoxb6 |
| 1.99e-52 | FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_6a8af3b983821ab0a3a5f4a67147c64c | p@chr2:74530108..74530131, + |
| 1.99e-52 | FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_6a8af3b983821ab0a3a5f4a67147c64c | p8@Hoxb6 |
| 2.3e-52 | FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_94a9955e45e997a8487e506f605b349b | p3@Slc6a5 |
| 2.3e-52 | FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_94a9955e45e997a8487e506f605b349b | p3@Slc6a5 |
| 4.11e-52 | FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_cf9c4ebe4f27e927579b79923d6a229e | p5@Hoxd10 |
| 4.11e-52 | FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_cf9c4ebe4f27e927579b79923d6a229e | p5@Hoxd10 |
| 8.11e-51 | FFCP PHASE2:Hg19::chr17:42989173..42989181,-#_c2c95a3f6f486ac740fe06998e9185a7 | p40@GFAP |
| 8.11e-51 | FFCP PHASE1:Hg19::chr17:42989173..42989181,-#_c2c95a3f6f486ac740fe06998e9185a7 | p40@GFAP |
| 1.89e-50 | FFCP PHASE2:Hg19::chr17:42983296..42983307,-#_896063dd723ba735319c85274491937b | p@chr17:42983296..42983307, - |
| 1.89e-50 | FFCP PHASE1:Hg19::chr17:42983296..42983307,-#_896063dd723ba735319c85274491937b | p@chr17:42983296..42983307, - |
| 2.23e-50 | FFCP PHASE1:Hg19::chrX:106692569..106692585,+#_60e775e1c6f9b8a9690eb6cb6bef6c32 | p@chrX:106692569..106692585, + |
| 2.23e-50 | FFCP PHASE2:Hg19::chrX:106692569..106692585,+#_60e775e1c6f9b8a9690eb6cb6bef6c32 | p@chrX:106692569..106692585, + |
| 2.23e-50 | FFCP PHASE1:Hg19::chrX:103046616..103046621,+#_60e775e1c6f9b8a9690eb6cb6bef6c32 | p@chrX:103046616..103046621, + |
| 2.23e-50 | FFCP PHASE2:Hg19::chrX:103046616..103046621,+#_60e775e1c6f9b8a9690eb6cb6bef6c32 | p@chrX:103046616..103046621, + |
| 1.47e-48 | FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_247231b60b8c582d0fce54891f852c6a | p1@Npff |
| 1.47e-48 | FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_247231b60b8c582d0fce54891f852c6a | p1@Npff |
| 2.57e-48 | FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_7eb97f95ae0af7a4926886a1a2fb7fde | p12@6330527O06Rik |
| 2.57e-48 | FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_7eb97f95ae0af7a4926886a1a2fb7fde | p12@6330527O06Rik |
