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{{UBERON
{{UBERON
|id=UBERON:0004086
|alt_id=
|name=brain ventricle
|anatomical_img_id=FMA:78447
|namespace=
|def="one of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid" []
|xref=BTO:0001442;;EFO:0001914;;EV:0100306;;FMA:78447;;MA:0000818;;MESH:A.08.186.211.276;;ncithesaurus:Ventricle_Brain;;NIF_GrossAnatomy:birnlex_1356;;OpenCyc:Mx4rvmTY65wpEbGdrcN5Y29ycA;;SCTID:180929003
|is_a=UBERON:0003947;;UBERON:0005358
|synonym="cerebral ventricle" EXACT [HP:0002118];;"region of ventricular system of brain" EXACT [FMA:78447]
|comment=Note that FMA draws the distinction between e.g. 'fourth ventricle' and 'cavity of fourth ventricle'. The former is a cavity, and part of the latter, which is a region. The superclass of 'fourth ventricle' is_a 'region of ventricular system of the brain'. We place this class here, although it is not equivalent to ventricles, as it includes ventricle bodies.
|comment=Note that FMA draws the distinction between e.g. 'fourth ventricle' and 'cavity of fourth ventricle'. The former is a cavity, and part of the latter, which is a region. The superclass of 'fourth ventricle' is_a 'region of ventricular system of the brain'. We place this class here, although it is not equivalent to ventricles, as it includes ventricle bodies.
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="one of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid" []
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004086
|is_a=UBERON:0003947 ;;UBERON:0005358
|is_obsolete=
|located_in=
|located_in=
|name=brain ventricle
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0005282
|part_of=UBERON:0005282
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="cerebral ventricle" EXACT [HP:0002118];;"region of ventricular system of brain" EXACT [FMA:78447]
|union_of=
|xref=BTO:0001442;;EFO:0001914;;EV:0100306;;FMA:78447;;MA:0000818;;MESH:A.08.186.211.276;;ncithesaurus:Ventricle_Brain;;NIF_GrossAnatomy:birnlex_1356;;OpenCyc:Mx4rvmTY65wpEbGdrcN5Y29ycA;;SCTID:180929003
}}
}}

Latest revision as of 17:43, 12 September 2014

Name:brain ventricle
Namespace:FANTOM
Definition:"one of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid" []
Xrefs:
links:

BTO:0001442
EFO:0001914
EV:0100306
FMA:78447
MA:0000818
MESH:A.08.186.211.276
ncithesaurus:Ventricle_Brain
NIF_GrossAnatomy:birnlex_1356
OpenCyc:Mx4rvmTY65wpEbGdrcN5Y29ycA

SCTID:180929003
Synonyms: "cerebral ventricle" EXACT [HP:0002118]
"region of ventricular system of brain" EXACT [FMA:78447]
Comments:Note that FMA draws the distinction between e.g. 'fourth ventricle' and 'cavity of fourth ventricle'. The former is a cavity, and part of the latter, which is a region. The superclass of 'fourth ventricle' is_a 'region of ventricular system of the brain'. We place this class here, although it is not equivalent to ventricles, as it includes ventricle bodies.

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003947(brain ventricle/choroid plexus),UBERON:0005358(ventricle of nervous system)
part_of:UBERON:0005282(ventricular system of brain)



Children

is a:UBERON:0002285 (telencephalic ventricle)
part of:UBERON:0001886 (choroid plexus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004086 (brain ventricle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_4ceb2a2cfd6c84999820b7d9ff8e124bp55@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_4ceb2a2cfd6c84999820b7d9ff8e124bp55@NAV1
3.29e-195FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_4ceb2a2cfd6c84999820b7d9ff8e124bp58@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_4ceb2a2cfd6c84999820b7d9ff8e124bp58@NAV1
8.99e-131FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_42721907d6ded837bc6cddea50db085ep@chr8:24997361..24997368, -
8.99e-131FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_42721907d6ded837bc6cddea50db085ep@chr8:24997361..24997368, -
3.96e-66FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_32bac25c1d8ecbf70c80130470c82b81p@chr3:146517344..146517356, +
3.96e-66FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_32bac25c1d8ecbf70c80130470c82b81p73@SEPT9
3.96e-66FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_32bac25c1d8ecbf70c80130470c82b81p73@SEPT9
3.96e-66FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_32bac25c1d8ecbf70c80130470c82b81p@chr3:146517344..146517356, +
4.77e-57FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_489783608387c4420fb2bfe0d3f47793p@chr12:15941738..15941768, +
4.77e-57FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_489783608387c4420fb2bfe0d3f47793p@chr12:15941738..15941768, +
6.36e-57FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_a82505ee4e75968e14c4b2ee5d2ae830p@chr5:149537789..149537803, -
6.36e-57FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_a82505ee4e75968e14c4b2ee5d2ae830p@chr5:149537789..149537803, -
8.82e-51FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_7f1a4ce1841042e97368ee62a21dd0fdp7@FLVCR2
8.82e-51FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_7f1a4ce1841042e97368ee62a21dd0fdp7@FLVCR2
8.82e-51FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_7f1a4ce1841042e97368ee62a21dd0fdp7@OBFC1
8.82e-51FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_7f1a4ce1841042e97368ee62a21dd0fdp7@OBFC1
5.15e-50FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_409e704cd4e0befe607ce699a117f469p@chr16:65159735..65159744, -
5.15e-50FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_409e704cd4e0befe607ce699a117f469p@chr16:65159735..65159744, -
1.22e-44FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_353439c320d0ae693a2433cc5ffb7e3ep20@EBF1
1.22e-44FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_353439c320d0ae693a2433cc5ffb7e3ep20@EBF1
1.53e-44FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_b3669168bc5a11448f0289c0aa4e7267p@chr11:60680190..60680212, +
1.53e-44FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_b3669168bc5a11448f0289c0aa4e7267p@chr11:60680190..60680212, +
5.99e-41FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_8c48fbdf149ef2189fd816cc66b2698fp7@METTL11A
5.99e-41FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_8c48fbdf149ef2189fd816cc66b2698fp7@METTL11A
8.98e-41FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_c4763dcc042fd83413dfbcb859f8b6a4p@chr1:19778678..19778689, -
8.98e-41FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_c4763dcc042fd83413dfbcb859f8b6a4p@chr1:19778678..19778689, -
1.34e-40FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_fae5055221bcfd4f60e16e85335a02b4p8@ENPEP
1.34e-40FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_fae5055221bcfd4f60e16e85335a02b4p8@ENPEP
9.84e-37FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_26960fe7bbba2a746cbe729ba4fe7461p3@ALX4
9.84e-37FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_26960fe7bbba2a746cbe729ba4fe7461p3@ALX4
1.18e-36FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_88f5c3b9c43a0e41b89063e0fad55caep@chr1:236203048..236203055, -
1.18e-36FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_88f5c3b9c43a0e41b89063e0fad55caep@chr1:236203048..236203055, -
1.42e-36FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_dd25db9a88382a2a013fd9868a556b96p20@RIMS1
1.42e-36FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_dd25db9a88382a2a013fd9868a556b96p20@RIMS1
1.7e-36FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_fddba704f1ee190a584c758f93a4afe2p@chr14:87636652..87636657, -
1.7e-36FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_fddba704f1ee190a584c758f93a4afe2p@chr14:87636652..87636657, -
2.04e-36FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_88e26e7f735c27ef107f33d062da86f5p30@PRKCH
2.04e-36FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_88e26e7f735c27ef107f33d062da86f5p30@PRKCH
1.11e-34FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_d9160cdd3edb4fb5d515f3076350b8d6p5@CMKLR1
1.11e-34FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_d9160cdd3edb4fb5d515f3076350b8d6p5@CMKLR1
5.04e-34FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_5f8e752fb19e0777f79aba779957aac2p11@SLC25A25
5.04e-34FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_5f8e752fb19e0777f79aba779957aac2p11@SLC25A25
7.05e-34FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_30557156af38deaf929136a54e9af9c1p@chr15:95869480..95869493, +
7.05e-34FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_30557156af38deaf929136a54e9af9c1p@chr15:95869480..95869493, +
7.05e-34FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_30557156af38deaf929136a54e9af9c1p17@PVT1
7.05e-34FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_30557156af38deaf929136a54e9af9c1p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_30557156af38deaf929136a54e9af9c1p11@HTR2B
7.05e-34FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_30557156af38deaf929136a54e9af9c1p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_30557156af38deaf929136a54e9af9c1p11@HTR2B
7.05e-34FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_30557156af38deaf929136a54e9af9c1p17@PVT1
1.37e-31FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_35111f8d23f3f60083639d11677bc5a9p3@MOGAT1
1.37e-31FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_35111f8d23f3f60083639d11677bc5a9p3@MOGAT1
4.71e-31FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_38b4cc80830c4aa385396fae8b11e871p@chr5:134260455..134260471, -
4.71e-31FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_38b4cc80830c4aa385396fae8b11e871p@chr5:134260455..134260471, -
4.71e-31FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_38b4cc80830c4aa385396fae8b11e871p3@AB464362
4.71e-31FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_38b4cc80830c4aa385396fae8b11e871p3@AB464362
6.96e-30FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_c92d9c673d18a3485222796b5ce0d7f7p@chr16:65159902..65159909, -
6.96e-30FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_c92d9c673d18a3485222796b5ce0d7f7p@chr16:65159902..65159909, -
1.08e-29FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_fcb7fdcfb4474b6b8dd1ebcb1da8bcbbp@chr5:149537807..149537827, -
1.08e-29FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_fcb7fdcfb4474b6b8dd1ebcb1da8bcbbp@chr5:149537807..149537827, -
9.09e-27FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_c49da02d4b67c9e0b2c1bc2f0e36c76fp6@ZIC4
9.09e-27FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_c49da02d4b67c9e0b2c1bc2f0e36c76fp6@ZIC4
1.67e-26FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_0903d0cfab6abf05c7aa35b8b050fc69p@chr2:238066183..238066194, -
1.67e-26FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_0903d0cfab6abf05c7aa35b8b050fc69p@chr2:238066183..238066194, -
4.08e-26FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_1920c39efd24f06c43da94b04a6b940ap@chr5:40910094..40910097, +
4.08e-26FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_1920c39efd24f06c43da94b04a6b940ap@chr5:40910094..40910097, +
5.56e-26FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_7d352cffc25b6a7260c73f6f22cde8eep@chr11:61634768..61634777, +
5.56e-26FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_7d352cffc25b6a7260c73f6f22cde8eep@chr11:61634768..61634777, +
7.14e-26FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_853498457841394974b0d9cffeacddffp2@ENST00000518934, p2@uc003xti.1
7.14e-26FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_853498457841394974b0d9cffeacddffp2@ENST00000518934, p2@uc003xti.1
9.18e-26FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_cce73b04ecbf5625dcedecf842ea74e3p@chr6:129504885..129504896, -
9.18e-26FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_cce73b04ecbf5625dcedecf842ea74e3p@chr6:129504885..129504896, -
1.44e-25FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_a376a560524842bdf3f51de9c0466d31p16@ZIC1
1.44e-25FFCP PHASE2:Hg19::chr12:279773..279812,+#_a376a560524842bdf3f51de9c0466d31p@chr12:279773..279812, +
1.44e-25FFCP PHASE1:Hg19::chr12:279773..279812,+#_a376a560524842bdf3f51de9c0466d31p@chr12:279773..279812, +
1.44e-25FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_a376a560524842bdf3f51de9c0466d31p16@ZIC1
2.37e-25FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_614b061bb3e226d565e08ae76cf1fcd6p@chr3:147112699..147112713, -
2.37e-25FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_614b061bb3e226d565e08ae76cf1fcd6p@chr3:147112699..147112713, -
1.15e-24FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_5082c860d5227ee6b17e95e9733d4ebcp5@FOXD2
1.15e-24FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_5082c860d5227ee6b17e95e9733d4ebcp5@FOXD2
1.45e-24FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_4f98eba952efc90500a2bd45dfde8e1fp@chr9:16138889..16138902, -
1.45e-24FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_4f98eba952efc90500a2bd45dfde8e1fp@chr9:16138889..16138902, -
2.97e-24FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_fd6bdb41a144092557c2e89e2ead91d5p6@MYO1B
2.97e-24FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_fd6bdb41a144092557c2e89e2ead91d5p6@MYO1B
3.34e-24FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_b4410e388f9c1090de6ef878c0c8d2d7p@chr3:147088197..147088208, -
3.34e-24FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_b4410e388f9c1090de6ef878c0c8d2d7p@chr3:147088197..147088208, -
5.35e-24FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_4fe98b33b2065645ed79920e21075043p@chr17:1013251..1013277, -
5.35e-24FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_4fe98b33b2065645ed79920e21075043p@chr17:1013251..1013277, -
1.01e-23FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_ca7373887972d2ff03cbad2297e2d88ap@chr11:60640905..60640919, +
1.01e-23FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_ca7373887972d2ff03cbad2297e2d88ap@chr11:60640905..60640919, +
1.42e-23FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_61f7565032710fe2cd90729b1c75d437p49@SEPT9
1.42e-23FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_61f7565032710fe2cd90729b1c75d437p49@SEPT9
3.49e-23FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_51591b8972e3fafb7cc10b2dfaacae9ap30@ST5
3.49e-23FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_51591b8972e3fafb7cc10b2dfaacae9ap30@ST5
6.84e-23FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_7b748390d7f8e771f54aa3883457807ep2@AB527577, p2@CU693346
6.84e-23FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_7b748390d7f8e771f54aa3883457807ep2@AB527577, p2@CU693346
2.06e-22FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_ecd259b64c38fdd401a9773b6be055f8p6@CCDC86
2.06e-22FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_ecd259b64c38fdd401a9773b6be055f8p6@CCDC86

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