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{{UBERON
{{UBERON
|id=UBERON:0003544
|alt_id=
|name=brain white matter
|namespace=
|def="the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026]
|xref=MA:0000820;;ncithesaurus:Brain_White_Matter
|is_a=UBERON:0002316;;UBERON:0002616
|synonym="brain white matter of neuraxis" EXACT [OBOL:automatic];;"brain white substance" EXACT [OBOL:automatic];;"white matter of brain" EXACT [OBOL:automatic];;"white matter of neuraxis of brain" EXACT [OBOL:automatic];;"white substance of brain" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003544
|is_a=UBERON:0002316
|is_obsolete=
|located_in=
|located_in=
|name=brain white matter
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000955
|part_of=UBERON:0000955
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="brain white matter of neuraxis" EXACT [OBOL:automatic];;"brain white substance" EXACT [OBOL:automatic];;"white matter of brain" EXACT [OBOL:automatic];;"white matter of neuraxis of brain" EXACT [OBOL:automatic];;"white substance of brain" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0000820;;ncithesaurus:Brain_White_Matter
}}
}}

Latest revision as of 17:40, 12 September 2014

Name:brain white matter
Namespace:FANTOM
Definition:"the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026]
Xrefs:
links:

MA:0000820

ncithesaurus:Brain_White_Matter
Synonyms: "brain white matter of neuraxis" EXACT [OBOL:automatic]
"brain white substance" EXACT [OBOL:automatic]
"white matter of brain" EXACT [OBOL:automatic]
"white matter of neuraxis of brain" EXACT [OBOL:automatic]
"white substance of brain" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002316(white matter)
part_of:UBERON:0000955(brain)



Children

is a:UBERON:0011299 (white matter of telencephalon)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003544 (brain white matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_0a5b6cdb743afcef51a413c1f57fe79ep3@BC032909, p3@BC032910
5.42e-195FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_0a5b6cdb743afcef51a413c1f57fe79ep@chr15:93827399..93827403, +
5.42e-195FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_0a5b6cdb743afcef51a413c1f57fe79ep@chr15:93827399..93827403, +
5.42e-195FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_0a5b6cdb743afcef51a413c1f57fe79ep@chr17:73689469..73689476, -
5.42e-195FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_0a5b6cdb743afcef51a413c1f57fe79ep@chr14:36462819..36462832, +
5.42e-195FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_0a5b6cdb743afcef51a413c1f57fe79ep@chr14:36462819..36462832, +
5.42e-195FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_0a5b6cdb743afcef51a413c1f57fe79ep@chr17:73689469..73689476, -
5.42e-195FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_0a5b6cdb743afcef51a413c1f57fe79ep3@BC032909, p3@BC032910
9.37e-99FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_91981c4064ac343b4c3c48529d939573p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_91981c4064ac343b4c3c48529d939573p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_91981c4064ac343b4c3c48529d939573p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_91981c4064ac343b4c3c48529d939573p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_91981c4064ac343b4c3c48529d939573p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_91981c4064ac343b4c3c48529d939573p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_91981c4064ac343b4c3c48529d939573p41@NAV3
9.37e-99FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_91981c4064ac343b4c3c48529d939573p41@NAV3
2.55e-98FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_209ef714d574011f85818fcc440e4c8bp10@SH3BP5
2.55e-98FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_209ef714d574011f85818fcc440e4c8bp@chr19:35788742..35788752, +
2.55e-98FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_209ef714d574011f85818fcc440e4c8bp@chr19:35788742..35788752, +
2.55e-98FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_209ef714d574011f85818fcc440e4c8bp10@SH3BP5
1.23e-66FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_4be6fae4fe7b6eb43fd91f9d090e4581p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_4be6fae4fe7b6eb43fd91f9d090e4581p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_4be6fae4fe7b6eb43fd91f9d090e4581p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_4be6fae4fe7b6eb43fd91f9d090e4581p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_4be6fae4fe7b6eb43fd91f9d090e4581p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_4be6fae4fe7b6eb43fd91f9d090e4581p32@NAV3
1.23e-66FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_4be6fae4fe7b6eb43fd91f9d090e4581p32@NAV3
1.23e-66FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_4be6fae4fe7b6eb43fd91f9d090e4581p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_4be6fae4fe7b6eb43fd91f9d090e4581p@chr8:42037488..42037504, +
1.23e-66FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_4be6fae4fe7b6eb43fd91f9d090e4581p@chr8:42037488..42037504, +
2.39e-66FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_ec6a88cba0e479d48f2b7e72e42b159ap@chr6:163681762..163681767, +
2.39e-66FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_ec6a88cba0e479d48f2b7e72e42b159ap16@FAM13C
2.39e-66FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_ec6a88cba0e479d48f2b7e72e42b159ap24@ARHGAP21
2.39e-66FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_ec6a88cba0e479d48f2b7e72e42b159ap@chr6:163681762..163681767, +
2.39e-66FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_ec6a88cba0e479d48f2b7e72e42b159ap16@FAM13C
2.39e-66FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_ec6a88cba0e479d48f2b7e72e42b159ap24@ARHGAP21
4.66e-66FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_4691cb386460597e62f98b799d48ef89p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_4691cb386460597e62f98b799d48ef89p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE1:Hg19::chr4:645709..645712,+#_4691cb386460597e62f98b799d48ef89p15@PDE6B
4.66e-66FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_4691cb386460597e62f98b799d48ef89p20@PRLR
4.66e-66FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_4691cb386460597e62f98b799d48ef89p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_4691cb386460597e62f98b799d48ef89p26@PRLR
4.66e-66FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_4691cb386460597e62f98b799d48ef89p15@CNP
4.66e-66FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_4691cb386460597e62f98b799d48ef89p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_4691cb386460597e62f98b799d48ef89p20@PRLR
4.66e-66FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_4691cb386460597e62f98b799d48ef89p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_4691cb386460597e62f98b799d48ef89p15@CNP
4.66e-66FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_4691cb386460597e62f98b799d48ef89p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_4691cb386460597e62f98b799d48ef89p26@PRLR
4.66e-66FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_4691cb386460597e62f98b799d48ef89p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_4691cb386460597e62f98b799d48ef89p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_4691cb386460597e62f98b799d48ef89p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_4691cb386460597e62f98b799d48ef89p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr4:645709..645712,+#_4691cb386460597e62f98b799d48ef89p15@PDE6B
4.66e-66FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_4691cb386460597e62f98b799d48ef89p@chr14:91199850..91199861, -
4.66e-66FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_4691cb386460597e62f98b799d48ef89p@chr14:91199850..91199861, -
1.46e-50FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_7209f651b0f218e4363352d2a2e6f085p2@LOC154449
1.46e-50FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_7209f651b0f218e4363352d2a2e6f085p2@LOC154449
2.42e-50FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_916004a1d4cd90061a70e0c9c2eff8f5p6@CYP4F3
2.42e-50FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chrX:103031196..103031205, -
2.42e-50FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_916004a1d4cd90061a70e0c9c2eff8f5p@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_916004a1d4cd90061a70e0c9c2eff8f5p6@CYP4F3
2.42e-50FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_916004a1d4cd90061a70e0c9c2eff8f5p8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_916004a1d4cd90061a70e0c9c2eff8f5p8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_916004a1d4cd90061a70e0c9c2eff8f5p@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chr10:7454514..7454525, -
2.42e-50FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chr10:7454514..7454525, -
2.42e-50FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_916004a1d4cd90061a70e0c9c2eff8f5p31@CKAP4
2.42e-50FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chrX:103031196..103031205, -
2.42e-50FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_916004a1d4cd90061a70e0c9c2eff8f5p31@CKAP4
3.99e-50FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_c5f8b92028dc34f9ee3876e14c21b51ap8@TRIM59
3.99e-50FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_c5f8b92028dc34f9ee3876e14c21b51ap@chr6:164364681..164364684, -
3.99e-50FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_c5f8b92028dc34f9ee3876e14c21b51ap@chr9:20927844..20927855, +
3.99e-50FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_c5f8b92028dc34f9ee3876e14c21b51ap@chr9:20927844..20927855, +
3.99e-50FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_c5f8b92028dc34f9ee3876e14c21b51ap@chr17:36726052..36726061, -
3.99e-50FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_c5f8b92028dc34f9ee3876e14c21b51ap@chr17:36726052..36726061, -
3.99e-50FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_c5f8b92028dc34f9ee3876e14c21b51ap@chr11:45922629..45922637, +
3.99e-50FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_c5f8b92028dc34f9ee3876e14c21b51ap@chr11:45922629..45922637, +
3.99e-50FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_c5f8b92028dc34f9ee3876e14c21b51ap8@TRIM59
3.99e-50FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_c5f8b92028dc34f9ee3876e14c21b51ap@chr6:164364681..164364684, -
6.58e-50FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_bc3477b7a15485fd1487cb74785eb671p8@CARNS1
6.58e-50FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_bc3477b7a15485fd1487cb74785eb671p10@PTPN3
6.58e-50FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_bc3477b7a15485fd1487cb74785eb671p13@TTLL4
6.58e-50FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_bc3477b7a15485fd1487cb74785eb671p@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr9:112191163..112191174,-#_bc3477b7a15485fd1487cb74785eb671p10@PTPN3
6.58e-50FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_bc3477b7a15485fd1487cb74785eb671p8@CARNS1
6.58e-50FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_bc3477b7a15485fd1487cb74785eb671p@chr11:117585539..117585541, -
6.58e-50FFCP PHASE2:Hg19::chr6:133119649..133119655,-#_bc3477b7a15485fd1487cb74785eb671p6@C6orf192
6.58e-50FFCP PHASE1:Hg19::chr2:219610931..219610941,+#_bc3477b7a15485fd1487cb74785eb671p13@TTLL4
6.58e-50FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_bc3477b7a15485fd1487cb74785eb671p38@ANKS1B
6.58e-50FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_bc3477b7a15485fd1487cb74785eb671p38@ANKS1B
6.58e-50FFCP PHASE2:Hg19::chr4:7412700..7412704,+#_bc3477b7a15485fd1487cb74785eb671p@chr4:7412700..7412704, +
6.58e-50FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_bc3477b7a15485fd1487cb74785eb671p6@C6orf192
6.58e-50FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_bc3477b7a15485fd1487cb74785eb671p@chr3:190578500..190578506, -
6.58e-50FFCP PHASE1:Hg19::chr4:7412700..7412704,+#_bc3477b7a15485fd1487cb74785eb671p@chr4:7412700..7412704, +
6.58e-50FFCP PHASE2:Hg19::chr3:10706167..10706179,-#_bc3477b7a15485fd1487cb74785eb671p@chr3:10706167..10706179, -
6.58e-50FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_bc3477b7a15485fd1487cb74785eb671p8@IL1RAPL1
6.58e-50FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_bc3477b7a15485fd1487cb74785eb671p@chr3:190578500..190578506, -

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