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{{UBERON
{{UBERON
|id=UBERON:0003064
|alt_id=UBERON:XAO_0000085-ZFA_0001206
|name=intermediate mesoderm
|namespace=
|def="The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm]
|xref=AAO:0010575;;EMAPA:16178;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png;;ncithesaurus:Intermediate_Mesoderm;;SCTID:361476001;;TAO:0001206;;VHOG:0000087;;XAO:0000085;;ZFA:0001206
|is_a=UBERON:0005423
|synonym="IM" RELATED [];;"intermediate plate mesoderm" RELATED [UBERON:cjm]
|comment=note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm').
|comment=note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm').
|alt_id=UBERON:XAO_0000085-ZFA_0001206
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0000926
|develops_from=UBERON:0000926
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003064
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|name=intermediate mesoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0000926;;UBERON:0005256
|part_of=UBERON:0000922;;UBERON:0000926;;UBERON:0005256
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Mesoderm between somite and lateral plate. Traditionally thought to give rise to the urogenital system.[AAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="IM" RELATED [];;"intermediate mesenchyme" RELATED [UBERONREF:0000002];;"intermediate plate mesoderm" RELATED [UBERON:cjm];;"mesenchyma intermedium" RELATED LATIN [Wikipedia:Intermediate_mesoderm]
|union_of=
|xref=AAO:0010575;;EMAPA:16178;;http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png;;ncithesaurus:Intermediate_Mesoderm;;SCTID:361476001;;TAO:0001206;;VHOG:0000087;;XAO:0000085;;ZFA:0001206
}}
}}

Latest revision as of 17:36, 12 September 2014

Name:intermediate mesoderm
Namespace:FANTOM
Definition:"The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm]
Xrefs:
links:

AAO:0010575
EMAPA:16178
[ Gray19_with_color.png Gray19_with_color.png]
[ 200px-Gray19_with_color.png 200px-Gray19_with_color.png]
ncithesaurus:Intermediate_Mesoderm
SCTID:361476001
TAO:0001206
VHOG:0000087
XAO:0000085

ZFA:0001206
Synonyms: "IM" RELATED []
"intermediate mesenchyme" RELATED [UBERONREF:0000002]
"intermediate plate mesoderm" RELATED [UBERON:cjm]
"mesenchyma intermedium" RELATED LATIN [Wikipedia:Intermediate_mesoderm]
Comments:note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm').
Alt_id: UBERON:XAO_0000085-ZFA_0001206
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0000922(embryo),UBERON:0000926(mesoderm),UBERON:0005256(trunk mesenchyme)



Children

develops from:UBERON:0000163 (embryonic cloaca),UBERON:0000164 (primitive urogenital sinus),UBERON:0003060 (pronephric duct),UBERON:0003890 (Mullerian duct),UBERON:0004122 (genitourinary system),UBERON:0004876 (urogenital ridge),UBERON:0005805 (dorsal aorta),UBERON:0006858 (adrenal/interrenal gland)
part of:UBERON:0005721 (pronephric mesoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003064 (intermediate mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.89e-56FFCP PHASE1:Mm9::chr8:71601351..71601362,-#_bd3d7a223e423ec854f597dc4aba3358p4@Slc18a1
9.89e-56FFCP PHASE2:Mm9::chr8:71601351..71601362,-#_bd3d7a223e423ec854f597dc4aba3358p4@Slc18a1
1.21e-49FFCP PHASE1:Mm9::chr19:21249374..21249395,-#_fee510994530c4c356683b7f7dad9f12p@chr19:21249374..21249395, -
1.21e-49FFCP PHASE2:Mm9::chr15:97654117..97654137,-#_fee510994530c4c356683b7f7dad9f12p@chr15:97654117..97654137, -
1.21e-49FFCP PHASE2:Mm9::chr19:21249374..21249395,-#_fee510994530c4c356683b7f7dad9f12p@chr19:21249374..21249395, -
1.21e-49FFCP PHASE1:Mm9::chr15:97654117..97654137,-#_fee510994530c4c356683b7f7dad9f12p@chr15:97654117..97654137, -
3.05e-44FFCP PHASE2:Mm9::chr15:97654090..97654102,-#_6fa02b44903adf5bf3e8364d417cbc7cp@chr15:97654090..97654102, -
3.05e-44FFCP PHASE1:Mm9::chr15:97654090..97654102,-#_6fa02b44903adf5bf3e8364d417cbc7cp@chr15:97654090..97654102, -
1.38e-43FFCP PHASE1:Mm9::chr16:35652352..35652356,-#_834de3ad2929da3eafdbe3bfab2891aep@chr16:35652352..35652356, -
1.38e-43FFCP PHASE2:Mm9::chr15:78832682..78832693,+#_834de3ad2929da3eafdbe3bfab2891aep@chr15:78832682..78832693, +
1.38e-43FFCP PHASE2:Mm9::chr1:73951774..73951810,-#_834de3ad2929da3eafdbe3bfab2891aep@chr1:73951774..73951810, -
1.38e-43FFCP PHASE1:Mm9::chr8:26923560..26923571,+#_834de3ad2929da3eafdbe3bfab2891aep@chr8:26923560..26923571, +
1.38e-43FFCP PHASE2:Mm9::chr17:34938706..34938718,-#_834de3ad2929da3eafdbe3bfab2891aep@chr17:34938706..34938718, -
1.38e-43FFCP PHASE2:Mm9::chr5:4038983..4039001,+#_834de3ad2929da3eafdbe3bfab2891aep@chr5:4038983..4039001, +
1.38e-43FFCP PHASE2:Mm9::chr4:137275600..137275640,+#_834de3ad2929da3eafdbe3bfab2891aep@chr4:137275600..137275640, +
1.38e-43FFCP PHASE1:Mm9::chr4:137275600..137275640,+#_834de3ad2929da3eafdbe3bfab2891aep@chr4:137275600..137275640, +
1.38e-43FFCP PHASE1:Mm9::chr6:34362117..34362128,+#_834de3ad2929da3eafdbe3bfab2891aep3@Akr1b7
1.38e-43FFCP PHASE2:Mm9::chr17:34941276..34941288,-#_834de3ad2929da3eafdbe3bfab2891aep4@Cyp21a1
1.38e-43FFCP PHASE1:Mm9::chr2:27026049..27026066,+#_834de3ad2929da3eafdbe3bfab2891aep@chr2:27026049..27026066, +
1.38e-43FFCP PHASE1:Mm9::chr11:100377686..100377694,-#_834de3ad2929da3eafdbe3bfab2891aep@chr11:100377686..100377694, -
1.38e-43FFCP PHASE1:Mm9::chr15:74663969..74663988,-#_834de3ad2929da3eafdbe3bfab2891aep@chr15:74663969..74663988, -
1.38e-43FFCP PHASE2:Mm9::chr18:76324790..76324803,+#_834de3ad2929da3eafdbe3bfab2891aep@chr18:76324790..76324803, +
1.38e-43FFCP PHASE1:Mm9::chr5:4038983..4039001,+#_834de3ad2929da3eafdbe3bfab2891aep@chr5:4038983..4039001, +
1.38e-43FFCP PHASE2:Mm9::chr16:35652352..35652356,-#_834de3ad2929da3eafdbe3bfab2891aep@chr16:35652352..35652356, -
1.38e-43FFCP PHASE1:Mm9::chr1:73951774..73951810,-#_834de3ad2929da3eafdbe3bfab2891aep@chr1:73951774..73951810, -
1.38e-43FFCP PHASE1:Mm9::chr15:74664966..74664981,-#_834de3ad2929da3eafdbe3bfab2891aep@chr15:74664966..74664981, -
1.38e-43FFCP PHASE1:Mm9::chr8:26923446..26923458,+#_834de3ad2929da3eafdbe3bfab2891aep@chr8:26923446..26923458, +
1.38e-43FFCP PHASE1:Mm9::chr2:27036499..27036503,+#_834de3ad2929da3eafdbe3bfab2891aep@chr2:27036499..27036503, +
1.38e-43FFCP PHASE2:Mm9::chr18:68588917..68588922,-#_834de3ad2929da3eafdbe3bfab2891aep3@Mc2r
1.38e-43FFCP PHASE1:Mm9::chr18:68588917..68588922,-#_834de3ad2929da3eafdbe3bfab2891aep3@Mc2r
1.38e-43FFCP PHASE1:Mm9::chr13:54672381..54672430,+#_834de3ad2929da3eafdbe3bfab2891aep@chr13:54672381..54672430, +
1.38e-43FFCP PHASE2:Mm9::chr17:34941009..34941023,-#_834de3ad2929da3eafdbe3bfab2891aep@chr17:34941009..34941023, -
1.38e-43FFCP PHASE2:Mm9::chr6:34362117..34362128,+#_834de3ad2929da3eafdbe3bfab2891aep3@Akr1b7
1.38e-43FFCP PHASE2:Mm9::chr7:29103899..29103915,-#_834de3ad2929da3eafdbe3bfab2891aep@chr7:29103899..29103915, -
1.38e-43FFCP PHASE1:Mm9::chr17:34941276..34941288,-#_834de3ad2929da3eafdbe3bfab2891aep4@Cyp21a1
1.38e-43FFCP PHASE2:Mm9::chr11:100377686..100377694,-#_834de3ad2929da3eafdbe3bfab2891aep@chr11:100377686..100377694, -
1.38e-43FFCP PHASE2:Mm9::chr8:26923560..26923571,+#_834de3ad2929da3eafdbe3bfab2891aep@chr8:26923560..26923571, +
1.38e-43FFCP PHASE2:Mm9::chr17:34941459..34941482,-#_834de3ad2929da3eafdbe3bfab2891aep2@Cyp21a1
1.38e-43FFCP PHASE2:Mm9::chr2:27026049..27026066,+#_834de3ad2929da3eafdbe3bfab2891aep@chr2:27026049..27026066, +
1.38e-43FFCP PHASE2:Mm9::chr15:74673026..74673039,-#_834de3ad2929da3eafdbe3bfab2891aep@chr15:74673026..74673039, -
1.38e-43FFCP PHASE1:Mm9::chr17:34938706..34938718,-#_834de3ad2929da3eafdbe3bfab2891aep@chr17:34938706..34938718, -
1.38e-43FFCP PHASE1:Mm9::chr18:76324790..76324803,+#_834de3ad2929da3eafdbe3bfab2891aep@chr18:76324790..76324803, +
1.38e-43FFCP PHASE1:Mm9::chr7:29103899..29103915,-#_834de3ad2929da3eafdbe3bfab2891aep@chr7:29103899..29103915, -
1.38e-43FFCP PHASE2:Mm9::chr15:74663969..74663988,-#_834de3ad2929da3eafdbe3bfab2891aep@chr15:74663969..74663988, -
1.38e-43FFCP PHASE2:Mm9::chr2:27036499..27036503,+#_834de3ad2929da3eafdbe3bfab2891aep@chr2:27036499..27036503, +
1.38e-43FFCP PHASE2:Mm9::chr15:74664966..74664981,-#_834de3ad2929da3eafdbe3bfab2891aep@chr15:74664966..74664981, -
1.38e-43FFCP PHASE1:Mm9::chr17:34941009..34941023,-#_834de3ad2929da3eafdbe3bfab2891aep@chr17:34941009..34941023, -
1.38e-43FFCP PHASE1:Mm9::chr15:74673026..74673039,-#_834de3ad2929da3eafdbe3bfab2891aep@chr15:74673026..74673039, -
1.38e-43FFCP PHASE1:Mm9::chr15:78832682..78832693,+#_834de3ad2929da3eafdbe3bfab2891aep@chr15:78832682..78832693, +
1.38e-43FFCP PHASE2:Mm9::chr17:34859353..34859366,-#_834de3ad2929da3eafdbe3bfab2891aep1@ENSMUST00000172970
1.38e-43FFCP PHASE2:Mm9::chr8:26923446..26923458,+#_834de3ad2929da3eafdbe3bfab2891aep@chr8:26923446..26923458, +
1.38e-43FFCP PHASE1:Mm9::chr17:34859353..34859366,-#_834de3ad2929da3eafdbe3bfab2891aep1@ENSMUST00000172970
1.38e-43FFCP PHASE2:Mm9::chr13:54672381..54672430,+#_834de3ad2929da3eafdbe3bfab2891aep@chr13:54672381..54672430, +
1.38e-43FFCP PHASE1:Mm9::chr17:34941459..34941482,-#_834de3ad2929da3eafdbe3bfab2891aep2@Cyp21a1
7.24e-40FFCP PHASE2:Mm9::chr8:95484471..95484483,+#_3b4cbfa0c978dfd9dfb479f946f310a3p3@Slc6a2
7.24e-40FFCP PHASE1:Mm9::chr8:95484471..95484483,+#_3b4cbfa0c978dfd9dfb479f946f310a3p3@Slc6a2
2.72e-38FFCP PHASE1:Mm9::chr17:80011121..80011128,+#_bbafc63349b554953dd5b75a1b815ca5p@chr17:80011121..80011128, +
2.72e-38FFCP PHASE1:Mm9::chr2:27021163..27021203,+#_bbafc63349b554953dd5b75a1b815ca5p@chr2:27021163..27021203, +
2.72e-38FFCP PHASE2:Mm9::chr8:26923838..26923851,+#_bbafc63349b554953dd5b75a1b815ca5p@chr8:26923838..26923851, +
2.72e-38FFCP PHASE1:Mm9::chr15:74665115..74665134,-#_bbafc63349b554953dd5b75a1b815ca5p@chr15:74665115..74665134, -
2.72e-38FFCP PHASE2:Mm9::chr5:30925848..30925858,-#_bbafc63349b554953dd5b75a1b815ca5p@chr5:30925848..30925858, -
2.72e-38FFCP PHASE2:Mm9::chr17:80011121..80011128,+#_bbafc63349b554953dd5b75a1b815ca5p@chr17:80011121..80011128, +
2.72e-38FFCP PHASE1:Mm9::chr17:34941491..34941513,-#_bbafc63349b554953dd5b75a1b815ca5p1@Cyp21a1
2.72e-38FFCP PHASE1:Mm9::chr8:26923635..26923652,-#_bbafc63349b554953dd5b75a1b815ca5p@chr8:26923635..26923652, -
2.72e-38FFCP PHASE1:Mm9::chr5:30925848..30925858,-#_bbafc63349b554953dd5b75a1b815ca5p@chr5:30925848..30925858, -
2.72e-38FFCP PHASE1:Mm9::chr6:34362190..34362202,+#_bbafc63349b554953dd5b75a1b815ca5p2@Akr1b7
2.72e-38FFCP PHASE2:Mm9::chr2:27021163..27021203,+#_bbafc63349b554953dd5b75a1b815ca5p@chr2:27021163..27021203, +
2.72e-38FFCP PHASE1:Mm9::chr8:26923838..26923851,+#_bbafc63349b554953dd5b75a1b815ca5p@chr8:26923838..26923851, +
2.72e-38FFCP PHASE2:Mm9::chr15:74665091..74665105,-#_bbafc63349b554953dd5b75a1b815ca5p@chr15:74665091..74665105, -
2.72e-38FFCP PHASE2:Mm9::chr17:34866927..34866961,-#_bbafc63349b554953dd5b75a1b815ca5p@chr17:34866927..34866961, -
2.72e-38FFCP PHASE1:Mm9::chr17:34866927..34866961,-#_bbafc63349b554953dd5b75a1b815ca5p@chr17:34866927..34866961, -
2.72e-38FFCP PHASE1:Mm9::chr17:50634715..50634724,-#_bbafc63349b554953dd5b75a1b815ca5p@chr17:50634715..50634724, -
2.72e-38FFCP PHASE2:Mm9::chr18:68588934..68588947,-#_bbafc63349b554953dd5b75a1b815ca5p2@Mc2r
2.72e-38FFCP PHASE1:Mm9::chr18:68588934..68588947,-#_bbafc63349b554953dd5b75a1b815ca5p2@Mc2r
2.72e-38FFCP PHASE2:Mm9::chr6:34362190..34362202,+#_bbafc63349b554953dd5b75a1b815ca5p2@Akr1b7
2.72e-38FFCP PHASE2:Mm9::chr15:74665115..74665134,-#_bbafc63349b554953dd5b75a1b815ca5p@chr15:74665115..74665134, -
2.72e-38FFCP PHASE1:Mm9::chr15:74707074..74707077,+#_bbafc63349b554953dd5b75a1b815ca5p@chr15:74707074..74707077, +
2.72e-38FFCP PHASE2:Mm9::chr15:74707074..74707077,+#_bbafc63349b554953dd5b75a1b815ca5p@chr15:74707074..74707077, +
2.72e-38FFCP PHASE2:Mm9::chr17:50634715..50634724,-#_bbafc63349b554953dd5b75a1b815ca5p@chr17:50634715..50634724, -
2.72e-38FFCP PHASE2:Mm9::chr8:26923635..26923652,-#_bbafc63349b554953dd5b75a1b815ca5p@chr8:26923635..26923652, -
2.72e-38FFCP PHASE1:Mm9::chr15:74665091..74665105,-#_bbafc63349b554953dd5b75a1b815ca5p@chr15:74665091..74665105, -
2.72e-38FFCP PHASE2:Mm9::chr17:34941491..34941513,-#_bbafc63349b554953dd5b75a1b815ca5p1@Cyp21a1
3.09e-38FFCP PHASE1:Mm9::chr1:153900342..153900361,-#_ed861ca71923963109eeed44053e9b20p@chr1:153900342..153900361, -
3.09e-38FFCP PHASE2:Mm9::chr5:21407397..21407419,+#_ed861ca71923963109eeed44053e9b20p@chr5:21407397..21407419, +
3.09e-38FFCP PHASE1:Mm9::chr6:34373028..34373046,+#_ed861ca71923963109eeed44053e9b20p@chr6:34373028..34373046, +
3.09e-38FFCP PHASE1:Mm9::chr5:21407397..21407419,+#_ed861ca71923963109eeed44053e9b20p@chr5:21407397..21407419, +
3.09e-38FFCP PHASE2:Mm9::chr6:34373028..34373046,+#_ed861ca71923963109eeed44053e9b20p@chr6:34373028..34373046, +
3.09e-38FFCP PHASE2:Mm9::chr1:153900342..153900361,-#_ed861ca71923963109eeed44053e9b20p@chr1:153900342..153900361, -
3.5e-38FFCP PHASE1:Mm9::chr3:79629387..79629400,-#_9cd0fe7d7a9124ba1b930c8c03a8f27bp@chr3:79629387..79629400, -
3.5e-38FFCP PHASE2:Mm9::chr3:79629387..79629400,-#_9cd0fe7d7a9124ba1b930c8c03a8f27bp@chr3:79629387..79629400, -
3.98e-38FFCP PHASE1:Mm9::chr1:73951957..73951972,-#_de092cbec04dd8c944c3fd0f10edd91fp@chr1:73951957..73951972, -
3.98e-38FFCP PHASE2:Mm9::chr1:73951957..73951972,-#_de092cbec04dd8c944c3fd0f10edd91fp@chr1:73951957..73951972, -
4.52e-38FFCP PHASE1:Mm9::chr3:98686156..98686162,-#_3f407bbe4b6a5916c41d0b56f6facfcfp@chr3:98686156..98686162, -
4.52e-38FFCP PHASE2:Mm9::chr3:98657253..98657270,-#_3f407bbe4b6a5916c41d0b56f6facfcfp@chr3:98657253..98657270, -
4.52e-38FFCP PHASE1:Mm9::chr3:98657253..98657270,-#_3f407bbe4b6a5916c41d0b56f6facfcfp@chr3:98657253..98657270, -
4.52e-38FFCP PHASE2:Mm9::chr3:98686156..98686162,-#_3f407bbe4b6a5916c41d0b56f6facfcfp@chr3:98686156..98686162, -
5.13e-38FFCP PHASE2:Mm9::chr17:34947621..34947655,-#_a2c7122ddc515ea9a1d39c1cee95f1bfp@chr17:34947621..34947655, -
5.13e-38FFCP PHASE1:Mm9::chr17:34947621..34947655,-#_a2c7122ddc515ea9a1d39c1cee95f1bfp@chr17:34947621..34947655, -
1.49e-37FFCP PHASE2:Mm9::chr5:103945145..103945156,+#_7894afb5d9cdc1483eddb23a8d7f387fp@chr5:103945145..103945156, +
1.49e-37FFCP PHASE1:Mm9::chr18:76324815..76324824,+#_7894afb5d9cdc1483eddb23a8d7f387fp@chr18:76324815..76324824, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Mesoderm between somite and lateral plate. Traditionally thought to give rise to the urogenital system.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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