UBERON:0002385: Difference between revisions
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(Created page with "{{UBERON
|id=UBERON:0002385
|name=muscle tissue
|namespace=
|def="Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourc...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_9641-MA_0002437 | ||
|comment=Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach. | |comment=Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach. | ||
|created_by= | |created_by= | ||
| | |def="Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0000926 | |develops_from=UBERON:0000926 | ||
|disjoint_from=UBERON:0003714 | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002385 | |||
|is_a=UBERON:0000479 ;;UBERON:0004120 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=muscle tissue | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |namespace=FANTOM | ||
|obo_creation_date= | |||
|part_of=UBERON:0001015 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0003714;;UBPROP:0000001 "One of the four types of tissue in traditional classifications. Tissue that contains cells with contractile filaments that move past each other and change the size of the cell. Muscle tissue also is separated into three distinct categories.[AAO]" xsd:string | |||
|subset=uberon_slim | |||
|synonym="muscle tissue" EXACT SENSU [];;"portion of muscle tissue" EXACT [FMA:9641];;"textus muscularis" EXACT [] | |||
|union_of= | |||
|xref=AAO:0000306;;AEO:0000122;;EHDAA2:0003122;;FMA:9641;;galen:MuscleTissue;;MA:0002437;;MESH:A.02.633;;ncithesaurus:Muscle_Tissue;;SCTID:91727004 | |||
}} | }} | ||
Latest revision as of 17:31, 12 September 2014
| Name: | muscle tissue | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func | ||
| Xrefs: |
| ||
| Synonyms: |
"muscle tissue" EXACT SENSU [] "portion of muscle tissue" EXACT [FMA:9641] "textus muscularis" EXACT [] | ||
| Comments: | Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach. | ||
| Alt_id: | UBERON:FMA_9641-MA_0002437 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| disjoint_from: | UBERON:0003714(neural tissue) |
| develops_from: | UBERON:0000926(mesoderm) |
| part_of: | UBERON:0001015(musculature) |
Children
| is a: | UBERON:0001135 (smooth muscle tissue),UBERON:0002036 (striated muscle tissue) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10048-101G3 (smooth muscle, adult, pool1)
- 10066-101I3 (skeletal muscle, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10094-102C4
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10300-104H3
- 10310-104I4
... further results Mouse (Mus musculus)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10048-101G3 (smooth muscle, adult, pool1)
- 10066-101I3 (skeletal muscle, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10094-102C4
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10300-104H3
- 10310-104I4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002385 (muscle tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.24e-58 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_aa4c03511afbc565c8643b8bf08921f9 | p@chrX:160838683..160838694, + |
| 5.24e-58 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_aa4c03511afbc565c8643b8bf08921f9 | p@chrX:160838683..160838694, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_3748792692c28954208a5df3b9ae3a60 | p@chr12:105433069..105433075, - |
| 5.11e-50 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_3748792692c28954208a5df3b9ae3a60 | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_3748792692c28954208a5df3b9ae3a60 | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_3748792692c28954208a5df3b9ae3a60 | p@chr12:105433069..105433075, - |
| 1.47e-48 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_e01ed7b07d4c41d4cd99ace6852cac03 | p@chrX:160838787..160838800, + |
| 1.47e-48 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_e01ed7b07d4c41d4cd99ace6852cac03 | p@chrX:160838787..160838800, + |
| 1.23e-45 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_c814005cc9c0b53b7dd92ddafc62e720 | p@chr6:53359400..53359406, + |
| 1.23e-45 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_c814005cc9c0b53b7dd92ddafc62e720 | p@chr6:53359400..53359406, + |
| 8.42e-44 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_fdb744f45703c2473e67333f973d8b95 | p@chr11:81849982..81850000, + |
| 8.42e-44 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_fdb744f45703c2473e67333f973d8b95 | p@chr11:81849982..81850000, + |
| 1.15e-40 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_54d6212a69c62a113fdbc6a5a2b780e1 | p@chr17:14813242..14813246, - |
| 1.15e-40 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_54d6212a69c62a113fdbc6a5a2b780e1 | p@chr17:14813242..14813246, - |
| 3.7e-39 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_daa978af111faa2709115cbf83e7e39d | p4@Gpr39 |
| 3.7e-39 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_daa978af111faa2709115cbf83e7e39d | p4@Gpr39 |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160840048..160840057, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160840048..160840057, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160840025..160840037, + |
| 4.49e-37 | FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_d8175879ce5d60dad729874f177af3c1 | p2@LRRC17 |
| 4.49e-37 | FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_d8175879ce5d60dad729874f177af3c1 | p2@LRRC17 |
| 7.76e-37 | FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_fa6366f3a9e42e3268c63795c9bfa383 | p@chr9:35685631..35685657, + |
| 7.76e-37 | FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_fa6366f3a9e42e3268c63795c9bfa383 | p@chr9:35685631..35685657, + |
| 1.55e-35 | FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_59fe2a0e208e80db9566bf7ab454d094 | p8@ARHGAP22 |
| 1.55e-35 | FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_59fe2a0e208e80db9566bf7ab454d094 | p8@ARHGAP22 |
| 3.31e-35 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_9a18d7e61425d806675934fb23b35441 | p11@Fam198b |
| 3.31e-35 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_9a18d7e61425d806675934fb23b35441 | p11@Fam198b |
| 3.69e-35 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_b0c6b3370b8e16fefe0d458bbb912a43 | p@chr1:127574253..127574264, + |
| 3.69e-35 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_b0c6b3370b8e16fefe0d458bbb912a43 | p@chr1:127574253..127574264, + |
| 5.09e-35 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_eac44526bac96cb4329f0c634572ca33 | p7@Gpr39 |
| 5.09e-35 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_eac44526bac96cb4329f0c634572ca33 | p7@Gpr39 |
| 5.98e-35 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_ec59a564afc6a433865f64d92634d8c2 | p11@Gpr39 |
| 5.98e-35 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_ec59a564afc6a433865f64d92634d8c2 | p11@Gpr39 |
| 7.03e-35 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_1bfe5f57f5b180f0b71b8a532806c300 | p@chrX:160839768..160839780, + |
| 7.03e-35 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_1bfe5f57f5b180f0b71b8a532806c300 | p@chrX:160839768..160839780, + |
| 1.33e-34 | FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_5b9cfbae15479bac05f37fb222c66cbb | p8@Gpr39 |
| 1.33e-34 | FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_5b9cfbae15479bac05f37fb222c66cbb | p8@Gpr39 |
| 2.4e-34 | FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_68761a11f39e8131202f580f954bf2a9 | p4@ARHGAP22 |
| 2.4e-34 | FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_68761a11f39e8131202f580f954bf2a9 | p4@ARHGAP22 |
| 4.34e-34 | FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_f7f57c9a1fc4bb9c8b1e4f74c423c761 | p1@LRRC17 |
| 4.34e-34 | FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_f7f57c9a1fc4bb9c8b1e4f74c423c761 | p1@LRRC17 |
| 1.01e-33 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_a77068c368336b5f918844c430d429f5 | p@chr11:102661517..102661541, - |
| 1.01e-33 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_a77068c368336b5f918844c430d429f5 | p@chr11:102661517..102661541, - |
| 3.36e-33 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_32991516b439c867baf3d91bfedcf115 | p@chr4:74703497..74703511, + |
| 3.36e-33 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_32991516b439c867baf3d91bfedcf115 | p@chr4:74703497..74703511, + |
| 9.96e-33 | FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_223f5de96a97279df38bdbdb0f35973e | p@chr9:35684475..35684520, + |
| 9.96e-33 | FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_223f5de96a97279df38bdbdb0f35973e | p@chr9:35684475..35684520, + |
| 1.11e-32 | FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_f28cd18cf9797b88b553c69b7514cc06 | p@chr4:7846444..7846449, - |
| 1.11e-32 | FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_f28cd18cf9797b88b553c69b7514cc06 | p@chr4:7846444..7846449, - |
| 1.38e-32 | FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_6c737aca54e777bb980686c97ffba6e8 | p@chr9:35689148..35689192, + |
| 1.38e-32 | FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_6c737aca54e777bb980686c97ffba6e8 | p@chr9:35689148..35689192, + |
| 3.94e-32 | FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_737552280314ae5edd23401ce7bce2b4 | p@chr7:96658543..96658553, - |
| 3.94e-32 | FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_737552280314ae5edd23401ce7bce2b4 | p@chr7:96658543..96658553, - |
| 6.63e-32 | FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_26c72e61e05a489b71149de27d0b34b1 | p3@LRRC17 |
| 6.63e-32 | FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_26c72e61e05a489b71149de27d0b34b1 | p3@LRRC17 |
| 1.03e-31 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_e490aaaed1a4c4e4d468db8a1bc20f77 | p2@SASH1 |
| 1.03e-31 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_e490aaaed1a4c4e4d468db8a1bc20f77 | p2@SASH1 |
| 1.33e-31 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_d49ced5a7b5a4ca91b9d9296d16cd4b3 | p2@Il6 |
| 1.33e-31 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_d49ced5a7b5a4ca91b9d9296d16cd4b3 | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_d49ced5a7b5a4ca91b9d9296d16cd4b3 | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_d49ced5a7b5a4ca91b9d9296d16cd4b3 | p2@Il6 |
| 1.59e-31 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_873e88d30d4d4c0f232b46a13e90cd9f | p@chr10:67598037..67598049, - |
| 1.59e-31 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_873e88d30d4d4c0f232b46a13e90cd9f | p@chr10:67598037..67598049, - |
| 2.52e-31 | FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_ff03558fde2dc10d46cd77d94b84be3b | p@chr9:35685445..35685517, + |
| 2.52e-31 | FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_ff03558fde2dc10d46cd77d94b84be3b | p@chr9:35685445..35685517, + |
| 2.72e-31 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_c8c7504415e5ec9b196f634fe8095eae | p@chr2:65009852..65009866, - |
| 2.72e-31 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_c8c7504415e5ec9b196f634fe8095eae | p@chr2:65009852..65009866, - |
| 2.8e-31 | FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_9df5aee9319af3dc8b0c181181c2209b | p@chr18:52678391..52678395, - |
| 2.8e-31 | FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_9df5aee9319af3dc8b0c181181c2209b | p@chr18:52678391..52678395, - |
| 4.49e-31 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_4adc3c4344db07556f9d49bbaa3d6945 | p@chr2:134548872..134548879, - |
| 4.49e-31 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_4adc3c4344db07556f9d49bbaa3d6945 | p@chr2:134548872..134548879, - |
| 4.6e-31 | FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_3e41dc1327d43addfc5d1657087e977a | p2@CXCL6 |
| 4.6e-31 | FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_3e41dc1327d43addfc5d1657087e977a | p2@CXCL6 |
| 6.22e-31 | FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_876edba34b67e14387374513a7c5d668 | p@chr4:169059590..169059615, + |
| 6.22e-31 | FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_876edba34b67e14387374513a7c5d668 | p@chr4:169059590..169059615, + |
| 7.65e-31 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_fe5411003f5ef30ff61711e4c791d464 | p@chr6:91222095..91222107, + |
| 7.65e-31 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_fe5411003f5ef30ff61711e4c791d464 | p@chr6:91222095..91222107, + |
| 1.01e-30 | FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_444388b63315ac3148e05538fdb2c2e3 | p9@Kctd10 |
| 1.01e-30 | FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_444388b63315ac3148e05538fdb2c2e3 | p9@Kctd10 |
| 1.17e-30 | FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_c72b3e79ca9f4deb122d21c5e28a5b43 | p6@Gpr39 |
| 1.17e-30 | FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_c72b3e79ca9f4deb122d21c5e28a5b43 | p6@Gpr39 |
| 1.33e-30 | FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_37a2f1bb9b914231e71a977162ece010 | p1@BDKRB1 |
| 1.33e-30 | FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_37a2f1bb9b914231e71a977162ece010 | p1@BDKRB1 |
| 1.34e-30 | FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_dde89f57ce793849d249ec6b5ce9f0f7 | p3@IFI27L2 |
| 1.34e-30 | FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_dde89f57ce793849d249ec6b5ce9f0f7 | p3@IFI27L2 |
| 1.55e-30 | FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_658014c4835cb52ba0141dd2d469a363 | p1@CU675118 |
| 1.55e-30 | FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_658014c4835cb52ba0141dd2d469a363 | p1@CU675118 |
| 1.72e-30 | FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_fc3f529b92f900666b8c4fd6bcfae3bd | p2@ELTD1 |
| 1.72e-30 | FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_fc3f529b92f900666b8c4fd6bcfae3bd | p2@ELTD1 |
| 6.51e-30 | FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_b5d9abdd484013ae92433cfe007f8d42 | p3@CXCL6 |
| 6.51e-30 | FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_b5d9abdd484013ae92433cfe007f8d42 | p3@CXCL6 |
| 7.66e-30 | FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_0108ba378efc093843c85c5278bd8a3e | p@chr9:35685273..35685313, + |
| 7.66e-30 | FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_0108ba378efc093843c85c5278bd8a3e | p@chr9:35685273..35685313, + |
| 8.47e-30 | FFCP PHASE1:Mm9::chr7:34998469..34998489,-#_1be544ee710994c2d8bef874ef891280 | p@chr7:34998469..34998489, - |
| 8.47e-30 | FFCP PHASE2:Mm9::chr7:34998469..34998489,-#_1be544ee710994c2d8bef874ef891280 | p@chr7:34998469..34998489, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_3b4a0231815d7955ac369538fa5afd6a | p@chr17:14802633..14802637, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chrX:160839338..160839364,+#_3b4a0231815d7955ac369538fa5afd6a | p@chrX:160839338..160839364, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "One of the four types of tissue in traditional classifications. Tissue that contains cells with contractile filaments that move past each other and change the size of the cell. Muscle tissue also is separated into three distinct categories.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
