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{{UBERON
{{UBERON
|id=UBERON:0002078
|alt_id=UBERON:FMA_7096-MA_0000075
|name=right atrium
|namespace=
|def="Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava.[FMA]" [FMA:FMA, Wikipedia:Right_atrium]
|xref=AAO:0010248;;BTO:0001703;;EHDAA2:0000290;;EMAPA:17321;;FMA:7096;;galen:RightAtrium;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png;;MA:0000075;;ncithesaurus:Right_Atrium;;OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw;;OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw;;SCTID:244383003;;VHOG:0000328;;XAO:0003192
|is_a=UBERON:0002081
|synonym="cardiac right atrium" EXACT [];;"heart right atrium" EXACT [];;"right atrium of heart" EXACT [];;"right cardiac atrium" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_7096-MA_0000075
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava.[FMA]" [FMA:FMA, Wikipedia:Right_atrium]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002078
|is_a=UBERON:0002081 ;;UBERON:0015212
|is_obsolete=
|located_in=
|located_in=
|name=right cardiac atrium
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="atrium dextrum" RELATED LATIN [Wikipedia:Right_atrium];;"cardiac right atrium" EXACT [];;"heart right atrium" EXACT [];;"right atrium of heart" EXACT [];;"right cardiac atrium" EXACT []
|union_of=
|xref=AAO:0010248;;BTO:0001703;;EHDAA2:0000290;;EMAPA:17321;;FMA:7096;;galen:RightAtrium;;http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png;;MA:0000075;;ncithesaurus:Right_Atrium;;OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw;;OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw;;SCTID:244383003;;VHOG:0000328;;XAO:0003192
}}
}}

Latest revision as of 17:25, 12 September 2014

Name:right cardiac atrium
Namespace:FANTOM
Definition:"Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava.[FMA]" [FMA:FMA, Wikipedia:Right_atrium]
Xrefs:
links:

AAO:0010248
BTO:0001703
EHDAA2:0000290
EMAPA:17321
FMA:7096
galen:RightAtrium
[1]
[ 200px-Diagram_of_the_human_heart_%28cropped%29.svg.png 200px-Diagram_of_the_human_heart_%28cropped%29.svg.png]
MA:0000075
ncithesaurus:Right_Atrium
OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw
OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw
SCTID:244383003
VHOG:0000328

XAO:0003192
Synonyms: "atrium dextrum" RELATED LATIN [Wikipedia:Right_atrium]
"cardiac right atrium" EXACT []
"heart right atrium" EXACT []
"right atrium of heart" EXACT []
"right cardiac atrium" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7096-MA_0000075
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002081(cardiac atrium),UBERON:0015212(lateral structure)



Children

part of:UBERON:0005208 (right atrium valve),UBERON:0005965 (outflow part of right atrium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002078 (right cardiac atrium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr10:92678409..92678410,-#_73c76a45228944cfbcf173379dd9711cp@chr10:92678409..92678410, -
5.42e-195FFCP PHASE1:Hg19::chr15:86272097..86272099,+#_73c76a45228944cfbcf173379dd9711cp@chr15:86272097..86272099, +
5.42e-195FFCP PHASE2:Hg19::chr5:99390735..99390743,-#_73c76a45228944cfbcf173379dd9711cp@chr5:99390735..99390743, -
5.42e-195FFCP PHASE1:Hg19::chr5:99390735..99390743,-#_73c76a45228944cfbcf173379dd9711cp@chr5:99390735..99390743, -
5.42e-195FFCP PHASE2:Hg19::chr15:86272097..86272099,+#_73c76a45228944cfbcf173379dd9711cp@chr15:86272097..86272099, +
5.42e-195FFCP PHASE2:Hg19::chr10:92678409..92678410,-#_73c76a45228944cfbcf173379dd9711cp@chr10:92678409..92678410, -
9.37e-99FFCP PHASE2:Hg19::chr7:97501400..97501407,-#_6afdd469a18e1197be43e9c9fdc2e49dp16@ASNS
9.37e-99FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_6afdd469a18e1197be43e9c9fdc2e49dp@chr2:179656442..179656451, -
9.37e-99FFCP PHASE1:Hg19::chr7:97501400..97501407,-#_6afdd469a18e1197be43e9c9fdc2e49dp16@ASNS
9.37e-99FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_6afdd469a18e1197be43e9c9fdc2e49dp@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr18:4003453..4003457,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr18:4003453..4003457, +
2.55e-98FFCP PHASE2:Hg19::chr2:103287330..103287331,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr2:103287330..103287331, +
2.55e-98FFCP PHASE2:Hg19::chr6:104898467..104898469,-#_4d6b84afac559fdf6a3e7058aacfc675p@chr6:104898467..104898469, -
2.55e-98FFCP PHASE1:Hg19::chr6:70647888..70647891,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr6:70647888..70647891, +
2.55e-98FFCP PHASE1:Hg19::chr18:4003453..4003457,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr18:4003453..4003457, +
2.55e-98FFCP PHASE2:Hg19::chr8:24530708..24530710,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr8:24530708..24530710, +
2.55e-98FFCP PHASE1:Hg19::chr2:103287330..103287331,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr2:103287330..103287331, +
2.55e-98FFCP PHASE1:Hg19::chr6:104898467..104898469,-#_4d6b84afac559fdf6a3e7058aacfc675p@chr6:104898467..104898469, -
2.55e-98FFCP PHASE1:Hg19::chr8:24530708..24530710,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr8:24530708..24530710, +
2.55e-98FFCP PHASE2:Hg19::chr18:39821929..39821932,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr18:39821929..39821932, +
2.55e-98FFCP PHASE2:Hg19::chr5:157747715..157747717,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr5:157747715..157747717, +
2.55e-98FFCP PHASE2:Hg19::chr14:68375236..68375240,+#_4d6b84afac559fdf6a3e7058aacfc675p9@RAD51B
2.55e-98FFCP PHASE1:Hg19::chr5:157747715..157747717,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr5:157747715..157747717, +
2.55e-98FFCP PHASE1:Hg19::chr18:39821929..39821932,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr18:39821929..39821932, +
2.55e-98FFCP PHASE1:Hg19::chrX:136514398..136514433,-#_4d6b84afac559fdf6a3e7058aacfc675p@chrX:136514398..136514433, -
2.55e-98FFCP PHASE2:Hg19::chrX:136514398..136514433,-#_4d6b84afac559fdf6a3e7058aacfc675p@chrX:136514398..136514433, -
2.55e-98FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_4d6b84afac559fdf6a3e7058aacfc675p@chr22:36000901..36000903, -
2.55e-98FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_4d6b84afac559fdf6a3e7058aacfc675p@chr22:36000901..36000903, -
2.55e-98FFCP PHASE1:Hg19::chr14:68375236..68375240,+#_4d6b84afac559fdf6a3e7058aacfc675p9@RAD51B
2.55e-98FFCP PHASE2:Hg19::chr6:70647888..70647891,+#_4d6b84afac559fdf6a3e7058aacfc675p@chr6:70647888..70647891, +
1.23e-66FFCP PHASE1:Hg19::chr2:26508626..26508627,+#_0bcb74ca5e732112580c17562abc51e9p@chr2:26508626..26508627, +
1.23e-66FFCP PHASE2:Hg19::chr5:99385820..99385831,-#_0bcb74ca5e732112580c17562abc51e9p@chr5:99385820..99385831, -
1.23e-66FFCP PHASE1:Hg19::chr14:30786806..30786810,-#_0bcb74ca5e732112580c17562abc51e9p@chr14:30786806..30786810, -
1.23e-66FFCP PHASE1:Hg19::chr5:99385820..99385831,-#_0bcb74ca5e732112580c17562abc51e9p@chr5:99385820..99385831, -
1.23e-66FFCP PHASE2:Hg19::chr19:35531882..35531893,-#_0bcb74ca5e732112580c17562abc51e9p@chr19:35531882..35531893, -
1.23e-66FFCP PHASE1:Hg19::chr2:218844837..218844842,-#_0bcb74ca5e732112580c17562abc51e9p@chr2:218844837..218844842, -
1.23e-66FFCP PHASE1:Hg19::chr19:35531882..35531893,-#_0bcb74ca5e732112580c17562abc51e9p@chr19:35531882..35531893, -
1.23e-66FFCP PHASE2:Hg19::chr2:218844837..218844842,-#_0bcb74ca5e732112580c17562abc51e9p@chr2:218844837..218844842, -
1.23e-66FFCP PHASE1:Hg19::chr16:10783399..10783401,+#_0bcb74ca5e732112580c17562abc51e9p@chr16:10783399..10783401, +
1.23e-66FFCP PHASE2:Hg19::chr17:77026478..77026512,+#_0bcb74ca5e732112580c17562abc51e9p@chr17:77026478..77026512, +
1.23e-66FFCP PHASE2:Hg19::chr14:30786806..30786810,-#_0bcb74ca5e732112580c17562abc51e9p@chr14:30786806..30786810, -
1.23e-66FFCP PHASE2:Hg19::chr2:123518588..123518591,+#_0bcb74ca5e732112580c17562abc51e9p@chr2:123518588..123518591, +
1.23e-66FFCP PHASE1:Hg19::chr17:77026478..77026512,+#_0bcb74ca5e732112580c17562abc51e9p@chr17:77026478..77026512, +
1.23e-66FFCP PHASE1:Hg19::chr2:123518588..123518591,+#_0bcb74ca5e732112580c17562abc51e9p@chr2:123518588..123518591, +
1.23e-66FFCP PHASE2:Hg19::chr16:10783399..10783401,+#_0bcb74ca5e732112580c17562abc51e9p@chr16:10783399..10783401, +
1.23e-66FFCP PHASE2:Hg19::chr2:26508626..26508627,+#_0bcb74ca5e732112580c17562abc51e9p@chr2:26508626..26508627, +
2.39e-66FFCP PHASE1:Hg19::chr6:104465140..104465144,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr6:104465140..104465144, -
2.39e-66FFCP PHASE1:Hg19::chr5:175084679..175084689,+#_dd79ea92f8174e44b2fecb66e95d0ae7p4@HRH2
2.39e-66FFCP PHASE2:Hg19::chr2:42043637..42043640,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr2:42043637..42043640, -
2.39e-66FFCP PHASE2:Hg19::chr7:54897467..54897468,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr7:54897467..54897468, -
2.39e-66FFCP PHASE2:Hg19::chr1:203150041..203150049,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr1:203150041..203150049, -
2.39e-66FFCP PHASE1:Hg19::chr2:42043637..42043640,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr2:42043637..42043640, -
2.39e-66FFCP PHASE1:Hg19::chr10:54464025..54464030,+#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr10:54464025..54464030, +
2.39e-66FFCP PHASE2:Hg19::chr18:40200823..40200829,+#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr18:40200823..40200829, +
2.39e-66FFCP PHASE2:Hg19::chr2:238859791..238859796,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr2:238859791..238859796, -
2.39e-66FFCP PHASE2:Hg19::chr13:56591781..56591785,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr13:56591781..56591785, -
2.39e-66FFCP PHASE1:Hg19::chr10:63204408..63204412,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr10:63204408..63204412, -
2.39e-66FFCP PHASE1:Hg19::chr7:54897467..54897468,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr7:54897467..54897468, -
2.39e-66FFCP PHASE1:Hg19::chr1:203150041..203150049,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr1:203150041..203150049, -
2.39e-66FFCP PHASE2:Hg19::chr1:1154360..1154365,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr1:1154360..1154365, -
2.39e-66FFCP PHASE1:Hg19::chr18:40200823..40200829,+#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr18:40200823..40200829, +
2.39e-66FFCP PHASE2:Hg19::chr5:150006500..150006508,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr5:150006500..150006508, -
2.39e-66FFCP PHASE1:Hg19::chr2:238859791..238859796,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr2:238859791..238859796, -
2.39e-66FFCP PHASE1:Hg19::chr1:1154360..1154365,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr1:1154360..1154365, -
2.39e-66FFCP PHASE1:Hg19::chr5:150006500..150006508,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr5:150006500..150006508, -
2.39e-66FFCP PHASE2:Hg19::chr1:189481131..189481134,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr1:189481131..189481134, -
2.39e-66FFCP PHASE2:Hg19::chr1:1154830..1154841,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr1:1154830..1154841, -
2.39e-66FFCP PHASE1:Hg19::chr1:189481131..189481134,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr1:189481131..189481134, -
2.39e-66FFCP PHASE1:Hg19::chr1:1154830..1154841,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr1:1154830..1154841, -
2.39e-66FFCP PHASE2:Hg19::chr3:135043585..135043591,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr3:135043585..135043591, -
2.39e-66FFCP PHASE2:Hg19::chr19:44414731..44414733,+#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr19:44414731..44414733, +
2.39e-66FFCP PHASE2:Hg19::chr19:7795730..7795740,-#_dd79ea92f8174e44b2fecb66e95d0ae7p5@CLEC4G
2.39e-66FFCP PHASE2:Hg19::chr10:54464025..54464030,+#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr10:54464025..54464030, +
2.39e-66FFCP PHASE1:Hg19::chr19:44414731..44414733,+#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr19:44414731..44414733, +
2.39e-66FFCP PHASE1:Hg19::chr8:127508635..127508640,+#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr8:127508635..127508640, +
2.39e-66FFCP PHASE1:Hg19::chr3:135043585..135043591,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr3:135043585..135043591, -
2.39e-66FFCP PHASE2:Hg19::chr6:104465140..104465144,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr6:104465140..104465144, -
2.39e-66FFCP PHASE2:Hg19::chr8:127508635..127508640,+#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr8:127508635..127508640, +
2.39e-66FFCP PHASE2:Hg19::chr10:63204408..63204412,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr10:63204408..63204412, -
2.39e-66FFCP PHASE1:Hg19::chr19:7795730..7795740,-#_dd79ea92f8174e44b2fecb66e95d0ae7p5@CLEC4G
2.39e-66FFCP PHASE2:Hg19::chr5:175084679..175084689,+#_dd79ea92f8174e44b2fecb66e95d0ae7p4@HRH2
2.39e-66FFCP PHASE1:Hg19::chr13:56591781..56591785,-#_dd79ea92f8174e44b2fecb66e95d0ae7p@chr13:56591781..56591785, -
4.66e-66FFCP PHASE2:Hg19::chr10:37485037..37485044,+#_1c49a9fe85023e32f0b4347ac82e46f5p@chr10:37485037..37485044, +
4.66e-66FFCP PHASE2:Hg19::chr9:86211495..86211499,-#_1c49a9fe85023e32f0b4347ac82e46f5p1@ENST00000362613
4.66e-66FFCP PHASE2:Hg19::chr2:16526810..16526812,-#_1c49a9fe85023e32f0b4347ac82e46f5p@chr2:16526810..16526812, -
4.66e-66FFCP PHASE2:Hg19::chr3:39233987..39233993,-#_1c49a9fe85023e32f0b4347ac82e46f5p14@XIRP1
4.66e-66FFCP PHASE1:Hg19::chr9:86211495..86211499,-#_1c49a9fe85023e32f0b4347ac82e46f5p1@ENST00000362613
4.66e-66FFCP PHASE1:Hg19::chr2:16526810..16526812,-#_1c49a9fe85023e32f0b4347ac82e46f5p@chr2:16526810..16526812, -
4.66e-66FFCP PHASE2:Hg19::chr1:11905799..11905806,-#_1c49a9fe85023e32f0b4347ac82e46f5p@chr1:11905799..11905806, -
4.66e-66FFCP PHASE2:Hg19::chr4:88042092..88042099,-#_1c49a9fe85023e32f0b4347ac82e46f5p@chr4:88042092..88042099, -
4.66e-66FFCP PHASE1:Hg19::chr13:25345488..25345491,+#_1c49a9fe85023e32f0b4347ac82e46f5p@chr13:25345488..25345491, +
4.66e-66FFCP PHASE1:Hg19::chr3:39233987..39233993,-#_1c49a9fe85023e32f0b4347ac82e46f5p14@XIRP1
4.66e-66FFCP PHASE1:Hg19::chr1:11905799..11905806,-#_1c49a9fe85023e32f0b4347ac82e46f5p@chr1:11905799..11905806, -
4.66e-66FFCP PHASE2:Hg19::chr21:40459334..40459341,+#_1c49a9fe85023e32f0b4347ac82e46f5p@chr21:40459334..40459341, +
4.66e-66FFCP PHASE1:Hg19::chr10:37485037..37485044,+#_1c49a9fe85023e32f0b4347ac82e46f5p@chr10:37485037..37485044, +
4.66e-66FFCP PHASE1:Hg19::chr4:88042092..88042099,-#_1c49a9fe85023e32f0b4347ac82e46f5p@chr4:88042092..88042099, -
4.66e-66FFCP PHASE1:Hg19::chr8:135501299..135501346,-#_1c49a9fe85023e32f0b4347ac82e46f5p@chr8:135501299..135501346, -
4.66e-66FFCP PHASE1:Hg19::chr21:40459334..40459341,+#_1c49a9fe85023e32f0b4347ac82e46f5p@chr21:40459334..40459341, +
4.66e-66FFCP PHASE2:Hg19::chr8:135501299..135501346,-#_1c49a9fe85023e32f0b4347ac82e46f5p@chr8:135501299..135501346, -
4.66e-66FFCP PHASE2:Hg19::chr13:25345488..25345491,+#_1c49a9fe85023e32f0b4347ac82e46f5p@chr13:25345488..25345491, +

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