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{{UBERON
{{UBERON
|id=UBERON:0001557
|alt_id=UBERON:FMA_45661-MA_0000442
|name=upper respiratory tract
|namespace=
|def="Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract]
|xref=EHDAA2:0002136;;EMAPA:17669;;FMA:45661;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg;;MA:0000442;;OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ;;SCTID:361381009;;VHOG:0000406
|is_a=UBERON:0000072
|synonym=
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_45661-MA_0000442
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001557
|is_a=UBERON:0000072
|is_obsolete=
|located_in=
|located_in=
|name=upper respiratory tract
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym=
|union_of=
|xref=EHDAA2:0002136;;EMAPA:17669;;FMA:45661;;http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg;;MA:0000442;;OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ;;SCTID:361381009;;VHOG:0000406
}}
}}

Latest revision as of 17:19, 12 September 2014

Name:upper respiratory tract
Namespace:FANTOM
Definition:"Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract]
Xrefs:
links:

EHDAA2:0002136
EMAPA:17669
FMA:45661
[1]
[2]
MA:0000442
OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ
SCTID:361381009

VHOG:0000406
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_45661-MA_0000442
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000072(segment of respiratory tract)



Children

part of:UBERON:0001707 (nasal cavity),UBERON:0004814 (upper respiratory tract epithelium),UBERON:0009145 (pharyngeal region of foregut),UBERON:0015787 (upper respiratory conduit)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001557 (upper respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.04e-92FFCP PHASE1:Hg19::chr2:233246793..233246841,-#_893f41b6bd87a40fefcacac4cbe37154p1@ENST00000441266
1.04e-92FFCP PHASE2:Hg19::chr17:79098633..79098647,-#_893f41b6bd87a40fefcacac4cbe37154p@chr17:79098633..79098647, -
1.04e-92FFCP PHASE2:Hg19::chr2:233246459..233246472,+#_893f41b6bd87a40fefcacac4cbe37154p9@ALPP
1.04e-92FFCP PHASE1:Hg19::chr2:233246459..233246472,+#_893f41b6bd87a40fefcacac4cbe37154p9@ALPP
1.04e-92FFCP PHASE1:Hg19::chr2:233246932..233246943,+#_893f41b6bd87a40fefcacac4cbe37154p6@ALPP
1.04e-92FFCP PHASE2:Hg19::chr2:233244473..233244503,+#_893f41b6bd87a40fefcacac4cbe37154p1@AK297894
1.04e-92FFCP PHASE1:Hg19::chr17:79098633..79098647,-#_893f41b6bd87a40fefcacac4cbe37154p@chr17:79098633..79098647, -
1.04e-92FFCP PHASE2:Hg19::chr2:233244912..233244922,+#_893f41b6bd87a40fefcacac4cbe37154p2@AK297894
1.04e-92FFCP PHASE2:Hg19::chr16:87869864..87869878,+#_893f41b6bd87a40fefcacac4cbe37154p@chr16:87869864..87869878, +
1.04e-92FFCP PHASE1:Hg19::chr8:128241234..128241241,-#_893f41b6bd87a40fefcacac4cbe37154p7@uc003ysb.2
1.04e-92FFCP PHASE1:Hg19::chr16:87869864..87869878,+#_893f41b6bd87a40fefcacac4cbe37154p@chr16:87869864..87869878, +
1.04e-92FFCP PHASE2:Hg19::chr2:53732986..53732989,-#_893f41b6bd87a40fefcacac4cbe37154p@chr2:53732986..53732989, -
1.04e-92FFCP PHASE2:Hg19::chr2:233246932..233246943,+#_893f41b6bd87a40fefcacac4cbe37154p6@ALPP
1.04e-92FFCP PHASE1:Hg19::chr2:233244912..233244922,+#_893f41b6bd87a40fefcacac4cbe37154p2@AK297894
1.04e-92FFCP PHASE1:Hg19::chr2:53732986..53732989,-#_893f41b6bd87a40fefcacac4cbe37154p@chr2:53732986..53732989, -
1.04e-92FFCP PHASE2:Hg19::chr8:128241234..128241241,-#_893f41b6bd87a40fefcacac4cbe37154p7@uc003ysb.2
1.04e-92FFCP PHASE2:Hg19::chr2:233246793..233246841,-#_893f41b6bd87a40fefcacac4cbe37154p1@ENST00000441266
1.04e-92FFCP PHASE1:Hg19::chr2:233244473..233244503,+#_893f41b6bd87a40fefcacac4cbe37154p1@AK297894
1.52e-83FFCP PHASE1:Hg19::chr4:134184041..134184064,-#_eef84bd4435712cbdd9b6c40866b2a9dp2@ENST00000507172
1.52e-83FFCP PHASE2:Hg19::chrX:86868675..86868686,+#_eef84bd4435712cbdd9b6c40866b2a9dp@chrX:86868675..86868686, +
1.52e-83FFCP PHASE2:Hg19::chr4:123838984..123838995,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr4:123838984..123838995, -
1.52e-83FFCP PHASE2:Hg19::chr7:54879838..54879849,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr7:54879838..54879849, -
1.52e-83FFCP PHASE2:Hg19::chr8:128265552..128265583,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr8:128265552..128265583, -
1.52e-83FFCP PHASE1:Hg19::chr2:233246656..233246666,+#_eef84bd4435712cbdd9b6c40866b2a9dp8@ALPP
1.52e-83FFCP PHASE1:Hg19::chr8:128265552..128265583,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr8:128265552..128265583, -
1.52e-83FFCP PHASE2:Hg19::chr4:134184041..134184064,-#_eef84bd4435712cbdd9b6c40866b2a9dp2@ENST00000507172
1.52e-83FFCP PHASE1:Hg19::chrX:86868675..86868686,+#_eef84bd4435712cbdd9b6c40866b2a9dp@chrX:86868675..86868686, +
1.52e-83FFCP PHASE1:Hg19::chr4:123838984..123838995,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr4:123838984..123838995, -
1.52e-83FFCP PHASE1:Hg19::chr7:54879838..54879849,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr7:54879838..54879849, -
1.52e-83FFCP PHASE2:Hg19::chr2:233246656..233246666,+#_eef84bd4435712cbdd9b6c40866b2a9dp8@ALPP
1.67e-83FFCP PHASE2:Hg19::chr2:233246988..233246995,+#_a6770af99d7933b119e7e30d7f6d0784p@chr2:233246988..233246995, +
1.67e-83FFCP PHASE1:Hg19::chr2:233246988..233246995,+#_a6770af99d7933b119e7e30d7f6d0784p@chr2:233246988..233246995, +
3.6e-83FFCP PHASE1:Hg19::chr8:128269736..128269748,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128269736..128269748, -
3.6e-83FFCP PHASE1:Hg19::chr8:128270857..128270869,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128270857..128270869, -
3.6e-83FFCP PHASE2:Hg19::chr8:128269736..128269748,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128269736..128269748, -
3.6e-83FFCP PHASE2:Hg19::chr19:3603296..3603307,+#_3295f5853cb0174a56656990cd46b8d8p@chr19:3603296..3603307, +
3.6e-83FFCP PHASE1:Hg19::chr19:3603296..3603307,+#_3295f5853cb0174a56656990cd46b8d8p@chr19:3603296..3603307, +
3.6e-83FFCP PHASE2:Hg19::chr8:128270857..128270869,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128270857..128270869, -
3.6e-83FFCP PHASE2:Hg19::chr8:128270240..128270252,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128270240..128270252, -
3.6e-83FFCP PHASE1:Hg19::chr8:128270240..128270252,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128270240..128270252, -
1.46e-82FFCP PHASE2:Hg19::chr4:134183951..134183960,-#_70da3fd13779de8a17384e21d395cdb6p4@ENST00000507172
1.46e-82FFCP PHASE1:Hg19::chr4:134183951..134183960,-#_70da3fd13779de8a17384e21d395cdb6p4@ENST00000507172
4.83e-76FFCP PHASE2:Hg19::chr2:233243233..233243245,+#_2b8d90cb40da8ac4458845024e076a11p5@ALPP
4.83e-76FFCP PHASE1:Hg19::chr1:207262293..207262306,+#_2b8d90cb40da8ac4458845024e076a11p17@C4BPB
4.83e-76FFCP PHASE2:Hg19::chr1:207262293..207262306,+#_2b8d90cb40da8ac4458845024e076a11p17@C4BPB
4.83e-76FFCP PHASE1:Hg19::chr11:3147806..3147811,-#_2b8d90cb40da8ac4458845024e076a11p7@OSBPL5
4.83e-76FFCP PHASE2:Hg19::chr11:3147806..3147811,-#_2b8d90cb40da8ac4458845024e076a11p7@OSBPL5
4.83e-76FFCP PHASE1:Hg19::chr2:233243233..233243245,+#_2b8d90cb40da8ac4458845024e076a11p5@ALPP
6.84e-76FFCP PHASE2:Hg19::chr11:4154830..4154835,+#_61e3fac8600fd66ccb1d8c1f59214e5bp@chr11:4154830..4154835, +
6.84e-76FFCP PHASE1:Hg19::chr11:4154830..4154835,+#_61e3fac8600fd66ccb1d8c1f59214e5bp@chr11:4154830..4154835, +
8.88e-76FFCP PHASE2:Hg19::chr8:128433201..128433228,-#_25d68900072ac2e09d5e7927c1ce0faap1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1
8.88e-76FFCP PHASE1:Hg19::chr8:128433201..128433228,-#_25d68900072ac2e09d5e7927c1ce0faap1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1
1.06e-75FFCP PHASE1:Hg19::chr8:128270900..128270912,-#_2cfe99c1be0bb3849b5ca4142430c6a8p@chr8:128270900..128270912, -
1.06e-75FFCP PHASE2:Hg19::chr8:128270900..128270912,-#_2cfe99c1be0bb3849b5ca4142430c6a8p@chr8:128270900..128270912, -
1.15e-75FFCP PHASE2:Hg19::chr4:173884019..173884038,+#_468fa143f4d0a3f5d92db2b2fcc960c9p@chr4:173884019..173884038, +
1.15e-75FFCP PHASE1:Hg19::chr4:173884019..173884038,+#_468fa143f4d0a3f5d92db2b2fcc960c9p@chr4:173884019..173884038, +
1.37e-75FFCP PHASE1:Hg19::chr4:173883984..173884005,+#_0f29d4b9dcae6c0c688c945c2bdfa47ap@chr4:173883984..173884005, +
1.37e-75FFCP PHASE2:Hg19::chr4:173883984..173884005,+#_0f29d4b9dcae6c0c688c945c2bdfa47ap@chr4:173883984..173884005, +
1.78e-75FFCP PHASE2:Hg19::chr2:10529417..10529422,+#_7d2b6f1aa743800268d505351d0a21a8p@chr2:10529417..10529422, +
1.78e-75FFCP PHASE1:Hg19::chr2:10529417..10529422,+#_7d2b6f1aa743800268d505351d0a21a8p@chr2:10529417..10529422, +
1.2e-73FFCP PHASE1:Hg19::chr8:128231737..128231742,-#_40e4882fb656d369fa9889508cba2ff8p14@ENST00000500112, p14@uc003ysa.1
1.2e-73FFCP PHASE2:Hg19::chr8:128231737..128231742,-#_40e4882fb656d369fa9889508cba2ff8p14@ENST00000500112, p14@uc003ysa.1
1.3e-73FFCP PHASE1:Hg19::chr8:143782507..143782516,+#_a370c0c92384919e08b14dcea8047f0dp@chr8:143782507..143782516, +
1.3e-73FFCP PHASE2:Hg19::chr8:143782507..143782516,+#_a370c0c92384919e08b14dcea8047f0dp@chr8:143782507..143782516, +
1.92e-73FFCP PHASE2:Hg19::chr2:233246589..233246598,+#_99f2861249279f1d39669f6e6c17a183p12@ALPP
1.92e-73FFCP PHASE1:Hg19::chr2:233246589..233246598,+#_99f2861249279f1d39669f6e6c17a183p12@ALPP
2.11e-73FFCP PHASE2:Hg19::chr16:87874486..87874492,-#_37cda8b4fe7664d98ca7de0941553096p@chr16:87874486..87874492, -
2.11e-73FFCP PHASE1:Hg19::chr16:87874486..87874492,-#_37cda8b4fe7664d98ca7de0941553096p@chr16:87874486..87874492, -
3.12e-73FFCP PHASE2:Hg19::chr2:234590530..234590553,+#_13313347acace1e384233347bc280d0bp1@UGT1A7
3.12e-73FFCP PHASE1:Hg19::chr2:234590530..234590553,+#_13313347acace1e384233347bc280d0bp1@UGT1A7
3.71e-73FFCP PHASE2:Hg19::chr5:370156..370169,+#_7c75b968a6f05c5df5577302c2e5feb1p@chr5:370156..370169, +
3.71e-73FFCP PHASE1:Hg19::chr5:370156..370169,+#_7c75b968a6f05c5df5577302c2e5feb1p@chr5:370156..370169, +
3.71e-73FFCP PHASE1:Hg19::chr8:128270948..128270958,-#_7c75b968a6f05c5df5577302c2e5feb1p@chr8:128270948..128270958, -
3.71e-73FFCP PHASE2:Hg19::chr8:128270948..128270958,-#_7c75b968a6f05c5df5577302c2e5feb1p@chr8:128270948..128270958, -
1.97e-72FFCP PHASE2:Hg19::chr16:87869840..87869849,+#_4f84c3b585076afcdde9cd639432af7ap@chr16:87869840..87869849, +
1.97e-72FFCP PHASE2:Hg19::chr9:84380797..84380800,+#_4f84c3b585076afcdde9cd639432af7ap@chr9:84380797..84380800, +
1.97e-72FFCP PHASE1:Hg19::chr2:233246442..233246451,+#_4f84c3b585076afcdde9cd639432af7ap16@ALPP
1.97e-72FFCP PHASE1:Hg19::chr16:87869840..87869849,+#_4f84c3b585076afcdde9cd639432af7ap@chr16:87869840..87869849, +
1.97e-72FFCP PHASE2:Hg19::chr2:233246442..233246451,+#_4f84c3b585076afcdde9cd639432af7ap16@ALPP
1.97e-72FFCP PHASE1:Hg19::chr9:84380797..84380800,+#_4f84c3b585076afcdde9cd639432af7ap@chr9:84380797..84380800, +
8.65e-70FFCP PHASE1:Hg19::chr17:9745568..9745583,+#_2f445531719a879d24abe5172f9c7c62p8@GLP2R
8.65e-70FFCP PHASE2:Hg19::chr2:233246828..233246839,+#_2f445531719a879d24abe5172f9c7c62p4@ALPP
8.65e-70FFCP PHASE2:Hg19::chr5:147582537..147582549,+#_2f445531719a879d24abe5172f9c7c62p4@SPINK6
8.65e-70FFCP PHASE2:Hg19::chr2:233243964..233243976,+#_2f445531719a879d24abe5172f9c7c62p@chr2:233243964..233243976, +
8.65e-70FFCP PHASE1:Hg19::chr2:233246828..233246839,+#_2f445531719a879d24abe5172f9c7c62p4@ALPP
8.65e-70FFCP PHASE1:Hg19::chr4:134076121..134076131,+#_2f445531719a879d24abe5172f9c7c62p15@PCDH10
8.65e-70FFCP PHASE1:Hg19::chr5:147582537..147582549,+#_2f445531719a879d24abe5172f9c7c62p4@SPINK6
8.65e-70FFCP PHASE2:Hg19::chr4:134076121..134076131,+#_2f445531719a879d24abe5172f9c7c62p15@PCDH10
8.65e-70FFCP PHASE2:Hg19::chr17:9745568..9745583,+#_2f445531719a879d24abe5172f9c7c62p8@GLP2R
8.65e-70FFCP PHASE1:Hg19::chr2:233243964..233243976,+#_2f445531719a879d24abe5172f9c7c62p@chr2:233243964..233243976, +
9.37e-70FFCP PHASE1:Hg19::chr8:128231456..128231465,-#_ad75d9b21f266c435b881d318e97def2p13@ENST00000500112, p13@uc003ysa.1
9.37e-70FFCP PHASE2:Hg19::chr8:128231456..128231465,-#_ad75d9b21f266c435b881d318e97def2p13@ENST00000500112, p13@uc003ysa.1
1.02e-69FFCP PHASE2:Hg19::chr1:207262478..207262493,+#_441a58d71d76058a11c525ce90ea48e7p14@C4BPB
1.02e-69FFCP PHASE1:Hg19::chr1:207262478..207262493,+#_441a58d71d76058a11c525ce90ea48e7p14@C4BPB
1.29e-69FFCP PHASE2:Hg19::chr2:233324211..233324229,-#_7996141dc0e4652c3d74435722bb8331p@chr2:233324211..233324229, -
1.29e-69FFCP PHASE1:Hg19::chr2:233324211..233324229,-#_7996141dc0e4652c3d74435722bb8331p@chr2:233324211..233324229, -
1.29e-69FFCP PHASE2:Hg19::chr2:233321333..233321358,+#_7996141dc0e4652c3d74435722bb8331p@chr2:233321333..233321358, +
1.29e-69FFCP PHASE1:Hg19::chr2:233321333..233321358,+#_7996141dc0e4652c3d74435722bb8331p@chr2:233321333..233321358, +
1.4e-69FFCP PHASE1:Hg19::chr2:211427642..211427670,+#_b75d117675255e837429ff25563fd4c3p@chr2:211427642..211427670, +
1.4e-69FFCP PHASE2:Hg19::chr2:211427642..211427670,+#_b75d117675255e837429ff25563fd4c3p@chr2:211427642..211427670, +

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