UBERON:0001556: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001556
|name=lower urinary tract
|namespace=
|def="Subdivision of urinary system which consists of the urinary bladder and the urethra." []
|xref=FMA...") |
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{{UBERON | {{UBERON | ||
|alt_id=UBERON:FMA_45659-MA_0002636 | |alt_id=UBERON:FMA_45659-MA_0002636 | ||
| | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Subdivision of urinary system which consists of the urinary bladder and the urethra." [FMA:45659] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001556 | |||
|is_a=UBERON:0000477 ;;UBERON:0006554 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=lower urinary tract | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001008 | |part_of=UBERON:0001008 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |||
|subset=uberon_slim | |||
|synonym= | |||
|union_of= | |||
|xref=FMA:45659;;galen:LowerUrinaryTract;;MA:0002636;;SCTID:181420004 | |||
}} | }} | ||
Latest revision as of 17:19, 12 September 2014
| Name: | lower urinary tract | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Subdivision of urinary system which consists of the urinary bladder and the urethra." [FMA:45659] | ||
| Xrefs: |
| ||
| Alt_id: | UBERON:FMA_45659-MA_0002636 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0006554(urinary system structure) |
|---|---|
| part_of: | UBERON:0001008(renal system) |
Children
| part of: | UBERON:0000057 (urethra),UBERON:0001255 (urinary bladder),CL:1000600 (lower urinary tract cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10291-104G3
- 10319-105A4 (Urethra, donor2)
- 10347-105D5
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10291-104G3
- 10319-105A4 (Urethra, donor2)
- 10347-105D5
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001556 (lower urinary tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:184801068..184801075,-#_04efdebd7ddf5a36c16380bc827c0a40 | p@chr1:184801068..184801075, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:99673979..99673984,+#_04efdebd7ddf5a36c16380bc827c0a40 | p27@SYNM |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_04efdebd7ddf5a36c16380bc827c0a40 | p2@ENST00000427341 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:184801068..184801075,-#_04efdebd7ddf5a36c16380bc827c0a40 | p@chr1:184801068..184801075, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:99673979..99673984,+#_04efdebd7ddf5a36c16380bc827c0a40 | p27@SYNM |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_04efdebd7ddf5a36c16380bc827c0a40 | p2@ENST00000427341 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_04efdebd7ddf5a36c16380bc827c0a40 | p@chr15:101282110..101282113, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_04efdebd7ddf5a36c16380bc827c0a40 | p@chr15:101282110..101282113, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:148796190..148796191,+#_04efdebd7ddf5a36c16380bc827c0a40 | p@chr5:148796190..148796191, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:125155637..125155639,+#_04efdebd7ddf5a36c16380bc827c0a40 | p@chr9:125155637..125155639, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:148796190..148796191,+#_04efdebd7ddf5a36c16380bc827c0a40 | p@chr5:148796190..148796191, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:125155637..125155639,+#_04efdebd7ddf5a36c16380bc827c0a40 | p@chr9:125155637..125155639, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:3808512..3808513,-#_04efdebd7ddf5a36c16380bc827c0a40 | p@chr17:3808512..3808513, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:3808512..3808513,-#_04efdebd7ddf5a36c16380bc827c0a40 | p@chr17:3808512..3808513, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:77520043..77520048,+#_337cba022326c0967d1013fd253cd7e3 | p@chr10:77520043..77520048, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:31388578..31388584,-#_337cba022326c0967d1013fd253cd7e3 | p@chr7:31388578..31388584, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:68331267..68331286,-#_337cba022326c0967d1013fd253cd7e3 | p@chr14:68331267..68331286, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:61188929..61188936,+#_337cba022326c0967d1013fd253cd7e3 | p@chr10:61188929..61188936, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:31388578..31388584,-#_337cba022326c0967d1013fd253cd7e3 | p@chr7:31388578..31388584, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:68331267..68331286,-#_337cba022326c0967d1013fd253cd7e3 | p@chr14:68331267..68331286, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:84847637..84847642,+#_337cba022326c0967d1013fd253cd7e3 | p3@Upk3a |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:44429795..44429800,+#_337cba022326c0967d1013fd253cd7e3 | p3@Npy6r |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:29722238..29722242,-#_337cba022326c0967d1013fd253cd7e3 | p@chr14:29722238..29722242, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:36485068..36485103,-#_337cba022326c0967d1013fd253cd7e3 | p@chr15:36485068..36485103, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr19:58073599..58073605,+#_337cba022326c0967d1013fd253cd7e3 | p@chr19:58073599..58073605, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr19:34791339..34791346,-#_337cba022326c0967d1013fd253cd7e3 | p@chr19:34791339..34791346, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:89595040..89595050,-#_337cba022326c0967d1013fd253cd7e3 | p@chr11:89595040..89595050, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:77520043..77520048,+#_337cba022326c0967d1013fd253cd7e3 | p@chr10:77520043..77520048, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:36485068..36485103,-#_337cba022326c0967d1013fd253cd7e3 | p@chr15:36485068..36485103, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:80992302..80992309,+#_337cba022326c0967d1013fd253cd7e3 | p@chr12:80992302..80992309, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:24078882..24078896,+#_337cba022326c0967d1013fd253cd7e3 | p2@Sbp |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:109794961..109794968,-#_337cba022326c0967d1013fd253cd7e3 | p@chr9:109794961..109794968, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:80992302..80992309,+#_337cba022326c0967d1013fd253cd7e3 | p@chr12:80992302..80992309, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:109794961..109794968,-#_337cba022326c0967d1013fd253cd7e3 | p@chr9:109794961..109794968, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:29722238..29722242,-#_337cba022326c0967d1013fd253cd7e3 | p@chr14:29722238..29722242, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:84847637..84847642,+#_337cba022326c0967d1013fd253cd7e3 | p3@Upk3a |
| 3.07e-86 | FFCP PHASE2:Mm9::chr19:58073599..58073605,+#_337cba022326c0967d1013fd253cd7e3 | p@chr19:58073599..58073605, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:89595040..89595050,-#_337cba022326c0967d1013fd253cd7e3 | p@chr11:89595040..89595050, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:74005044..74005065,+#_337cba022326c0967d1013fd253cd7e3 | p@chr9:74005044..74005065, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:44429795..44429800,+#_337cba022326c0967d1013fd253cd7e3 | p3@Npy6r |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:74005044..74005065,+#_337cba022326c0967d1013fd253cd7e3 | p@chr9:74005044..74005065, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:61188929..61188936,+#_337cba022326c0967d1013fd253cd7e3 | p@chr10:61188929..61188936, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr19:34791339..34791346,-#_337cba022326c0967d1013fd253cd7e3 | p@chr19:34791339..34791346, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:24078882..24078896,+#_337cba022326c0967d1013fd253cd7e3 | p2@Sbp |
| 2.74e-50 | FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_12c0c4a90b4b20c598d0e653ae84e8d9 | p26@LINC00340 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr6:21383702..21383704,+#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr6:21383702..21383704, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr21:39627877..39627884, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr6:21664489..21664494,+#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr6:21664489..21664494, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_12c0c4a90b4b20c598d0e653ae84e8d9 | p26@LINC00340 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr6:21383702..21383704,+#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr6:21383702..21383704, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr6:21588091..21588098,-#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr6:21588091..21588098, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr21:39627877..39627884, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr3:13992334..13992338, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr6:21588091..21588098,-#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr6:21588091..21588098, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr3:13992334..13992338, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr16:15850261..15850268,-#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr16:15850261..15850268, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:186567032..186567041,-#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr4:186567032..186567041, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr16:15850261..15850268,-#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr16:15850261..15850268, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr6:21664489..21664494,+#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr6:21664489..21664494, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:186567032..186567041,-#_12c0c4a90b4b20c598d0e653ae84e8d9 | p@chr4:186567032..186567041, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_a7422ae199baa236d81cb27ecd9e7d99 | p@chr1:233430709..233430711, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_a7422ae199baa236d81cb27ecd9e7d99 | p@chr1:233430709..233430711, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:21876977..21876981,+#_a7422ae199baa236d81cb27ecd9e7d99 | p@chr6:21876977..21876981, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:21876977..21876981,+#_a7422ae199baa236d81cb27ecd9e7d99 | p@chr6:21876977..21876981, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr7:31391935..31391967,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr7:31391935..31391967, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr4:117650200..117650211,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr4:117650200..117650211, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr7:31391935..31391967,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr7:31391935..31391967, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr4:41154091..41154099,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr4:41154091..41154099, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr5:87332887..87332894,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr5:87332887..87332894, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr9:48260437..48260446,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr9:48260437..48260446, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr19:34791405..34791413,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr19:34791405..34791413, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr5:87332887..87332894,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr5:87332887..87332894, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr10:77520022..77520033,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr10:77520022..77520033, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr2:135755239..135755248,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr2:135755239..135755248, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr7:31388597..31388604,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr7:31388597..31388604, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr7:31388597..31388604,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr7:31388597..31388604, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr16:38783715..38783726,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr16:38783715..38783726, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr18:44429732..44429737,+#_ee9d66c544e7ff7a546a7b105283095e | p2@Npy6r |
| 2.74e-44 | FFCP PHASE2:Mm9::chr16:44943814..44943823,+#_ee9d66c544e7ff7a546a7b105283095e | p4@Cd200r3 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr4:53416435..53416446,-#_ee9d66c544e7ff7a546a7b105283095e | p1@ENSMUST00000154377 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr15:36485291..36485294,-#_ee9d66c544e7ff7a546a7b105283095e | p2@Snx31 |
| 2.74e-44 | FFCP PHASE1:Mm9::chr9:48260437..48260446,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr9:48260437..48260446, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr19:34791405..34791413,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr19:34791405..34791413, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr7:31388822..31388831,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr7:31388822..31388831, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr10:76337225..76337243,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr10:76337225..76337243, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr2:135755239..135755248,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr2:135755239..135755248, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr16:44943814..44943823,+#_ee9d66c544e7ff7a546a7b105283095e | p4@Cd200r3 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr7:31388822..31388831,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr7:31388822..31388831, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr16:34922180..34922189,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr16:34922180..34922189, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr16:38783715..38783726,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr16:38783715..38783726, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr4:117650200..117650211,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr4:117650200..117650211, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr15:36485291..36485294,-#_ee9d66c544e7ff7a546a7b105283095e | p2@Snx31 |
| 2.74e-44 | FFCP PHASE1:Mm9::chr7:31390216..31390224,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr7:31390216..31390224, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr7:31390216..31390224,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr7:31390216..31390224, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr18:44429732..44429737,+#_ee9d66c544e7ff7a546a7b105283095e | p2@Npy6r |
| 2.74e-44 | FFCP PHASE1:Mm9::chr10:76337225..76337243,-#_ee9d66c544e7ff7a546a7b105283095e | p@chr10:76337225..76337243, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr2:35519156..35519171,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr2:35519156..35519171, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr5:92827077..92827083,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr5:92827077..92827083, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr2:35519156..35519171,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr2:35519156..35519171, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr10:77520022..77520033,+#_ee9d66c544e7ff7a546a7b105283095e | p@chr10:77520022..77520033, + |
