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{{UBERON
{{UBERON
|id=UBERON:0000119
|alt_id=
|name=cell layer
|namespace=
|def="Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm]
|xref=
|is_a=UBERON:0000479
|synonym="cell sheath" RELATED [];;"layer of cells" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000119
|is_a=UBERON:0000479
|is_obsolete=
|located_in=
|located_in=
|name=cell layer
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="cell sheath" RELATED [];;"layer of cells" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 17:06, 12 September 2014

Name:cell layer
Namespace:FANTOM
Definition:"Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm]
Synonyms: "cell sheath" RELATED []
"layer of cells" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000479(tissue)



Children

is a:UBERON:0000483 (epithelium),UBERON:0003210 (blood-cerebrospinal fluid barrier),UBERON:0004061 (neural tube mantle layer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000119 (cell layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.79e-41FFCP PHASE2:Hg19::chr16:56672571..56672587,+#_10eceaaaef81e8bccef65e0199802aecp2@MT1A
4.79e-41FFCP PHASE1:Hg19::chr16:56672571..56672587,+#_10eceaaaef81e8bccef65e0199802aecp2@MT1A
9.16e-40FFCP PHASE2:Hg19::chr22:30792980..30793047,+#_b5f513149697939ff3469e8fd81d6673p1@SEC14L2
9.16e-40FFCP PHASE1:Hg19::chr22:30792980..30793047,+#_b5f513149697939ff3469e8fd81d6673p1@SEC14L2
5.53e-39FFCP PHASE1:Hg19::chr2:26205550..26205624,-#_2b0d6906a9a6383b8e4718b8ff6801f8p1@KIF3C
5.53e-39FFCP PHASE2:Hg19::chr2:26205550..26205624,-#_2b0d6906a9a6383b8e4718b8ff6801f8p1@KIF3C
8.24e-39FFCP PHASE1:Hg19::chr5:148521047..148521076,+#_42d06908320c239e7eb1d11042bec3a4p1@ABLIM3
8.24e-39FFCP PHASE2:Hg19::chr5:148521047..148521076,+#_42d06908320c239e7eb1d11042bec3a4p1@ABLIM3
4.98e-38FFCP PHASE2:Hg19::chr1:85930830..85930858,-#_6ab4c937c57020e3f4541e7a42bccaa4p1@DDAH1
4.98e-38FFCP PHASE1:Hg19::chr1:85930830..85930858,-#_6ab4c937c57020e3f4541e7a42bccaa4p1@DDAH1
1.6e-37FFCP PHASE1:Hg19::chrX:140271249..140271333,-#_4e41b1c96a0a9b79bb5e9abc62a498f3p1@LDOC1
1.6e-37FFCP PHASE2:Hg19::chrX:140271249..140271333,-#_4e41b1c96a0a9b79bb5e9abc62a498f3p1@LDOC1
2.25e-37FFCP PHASE1:Hg19::chrX:128977781..128977869,-#_7ff1c3ecab93b337dfbc41799b7e8ab0p1@ZDHHC9
2.25e-37FFCP PHASE2:Hg19::chrX:128977781..128977869,-#_7ff1c3ecab93b337dfbc41799b7e8ab0p1@ZDHHC9
3.58e-37FFCP PHASE1:Hg19::chr18:47088419..47088437,+#_656e279dbe47fcad915ad8a143407e30p1@LIPG
3.58e-37FFCP PHASE2:Hg19::chr18:47088419..47088437,+#_656e279dbe47fcad915ad8a143407e30p1@LIPG
3.85e-37FFCP PHASE2:Hg19::chr11:60691924..60691966,+#_fa30e16c374e8c55246c35f123b4b428p1@TMEM132A
3.85e-37FFCP PHASE1:Hg19::chr11:60691924..60691966,+#_fa30e16c374e8c55246c35f123b4b428p1@TMEM132A
5.45e-37FFCP PHASE1:Hg19::chr2:242498138..242498179,+#_3480476a626ca5647fe0739d41dc0afcp1@BOK
5.45e-37FFCP PHASE2:Hg19::chr2:242498138..242498179,+#_3480476a626ca5647fe0739d41dc0afcp1@BOK
5.72e-37FFCP PHASE2:Hg19::chr17:73389854..73389993,-#_9347f9f6b300ed4e9a76d8d046be471fp2@GRB2
5.72e-37FFCP PHASE1:Hg19::chr17:73389854..73389993,-#_9347f9f6b300ed4e9a76d8d046be471fp2@GRB2
8.47e-37FFCP PHASE2:Hg19::chr3:52001448..52001478,-#_f9aafe1e261531e383e88824a19f1fc9p2@PCBP4
8.47e-37FFCP PHASE1:Hg19::chr3:52001448..52001478,-#_f9aafe1e261531e383e88824a19f1fc9p2@PCBP4
1.09e-36FFCP PHASE1:Hg19::chrX:140271349..140271401,-#_596a6ddcdf283c2726c9adcc2faddbe3p2@LDOC1
1.09e-36FFCP PHASE2:Hg19::chrX:140271349..140271401,-#_596a6ddcdf283c2726c9adcc2faddbe3p2@LDOC1
2.33e-36FFCP PHASE1:Hg19::chr2:26205340..26205381,-#_af7b30affa811f37413245e05bd0d20ap2@KIF3C
2.33e-36FFCP PHASE2:Hg19::chr2:26205340..26205381,-#_af7b30affa811f37413245e05bd0d20ap2@KIF3C
2.51e-36FFCP PHASE2:Hg19::chr22:41697520..41697613,+#_f9e2db6dc62743d58bfc027a3807c8dcp1@ZC3H7B
2.51e-36FFCP PHASE1:Hg19::chr22:41697520..41697613,+#_f9e2db6dc62743d58bfc027a3807c8dcp1@ZC3H7B
3.17e-36FFCP PHASE2:Hg19::chr3:52001426..52001447,-#_3e6b2a776a5f85074e557e28c47482b1p3@PCBP4
3.17e-36FFCP PHASE1:Hg19::chr3:52001426..52001447,-#_3e6b2a776a5f85074e557e28c47482b1p3@PCBP4
1.54e-35FFCP PHASE1:Hg19::chr10:15413224..15413308,-#_ce188a85d1f4765d6b2fc01e84b4d8c9p2@FAM171A1
1.54e-35FFCP PHASE2:Hg19::chr10:15413224..15413308,-#_ce188a85d1f4765d6b2fc01e84b4d8c9p2@FAM171A1
2.28e-35FFCP PHASE1:Hg19::chr4:145567297..145567355,+#_6dcb8c2a8029021252a34ca282ace924p1@HHIP
2.28e-35FFCP PHASE2:Hg19::chr4:145567297..145567355,+#_6dcb8c2a8029021252a34ca282ace924p1@HHIP
2.77e-35FFCP PHASE2:Hg19::chr3:170136642..170136663,+#_af1b9ce73a9a7acbffe2c25bf782bebcp1@CLDN11
2.77e-35FFCP PHASE1:Hg19::chr3:170136642..170136663,+#_af1b9ce73a9a7acbffe2c25bf782bebcp1@CLDN11
3.3e-35FFCP PHASE1:Hg19::chr4:17513702..17513720,-#_77160d75c2316cd385ebb6183b1e8cbap1@QDPR
3.3e-35FFCP PHASE2:Hg19::chr4:17513702..17513720,-#_77160d75c2316cd385ebb6183b1e8cbap1@QDPR
6.13e-35FFCP PHASE1:Hg19::chr16:58534039..58534056,+#_bb3dd7544b9ce51a078554851c58dbbep1@NDRG4
6.13e-35FFCP PHASE2:Hg19::chr16:58534039..58534056,+#_bb3dd7544b9ce51a078554851c58dbbep1@NDRG4
2.05e-34FFCP PHASE2:Hg19::chr11:125366089..125366207,-#_e02f5fd48375b836ab8c8644d669a707p1@FEZ1
2.05e-34FFCP PHASE1:Hg19::chr11:125366089..125366207,-#_e02f5fd48375b836ab8c8644d669a707p1@FEZ1
3.07e-34FFCP PHASE1:Hg19::chrX:134166360..134166371,+#_5765a4733be42394579dc7f89f007985p2@FAM127A
3.07e-34FFCP PHASE2:Hg19::chrX:134166360..134166371,+#_5765a4733be42394579dc7f89f007985p2@FAM127A
3.55e-34FFCP PHASE2:Hg19::chr22:38669002..38669024,-#_eb283cff5f82241de616eaab45d379d0p1@TMEM184B
3.55e-34FFCP PHASE1:Hg19::chr22:38669002..38669024,-#_eb283cff5f82241de616eaab45d379d0p1@TMEM184B
4.58e-34FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_662a826616c7a63a121e5a82bc51dd63p1@BIN1
4.58e-34FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_662a826616c7a63a121e5a82bc51dd63p1@BIN1
4.75e-34FFCP PHASE1:Hg19::chr16:89989741..89989759,+#_aac97d8ed07ab75ff62d89fa4aaf469bp1@TUBB3
4.75e-34FFCP PHASE2:Hg19::chr16:89989741..89989759,+#_aac97d8ed07ab75ff62d89fa4aaf469bp1@TUBB3
5.18e-34FFCP PHASE1:Hg19::chr20:62327996..62328013,+#_7247bb01e243dc11a7e193a0fcf8c785p1@TNFRSF6B
5.18e-34FFCP PHASE2:Hg19::chr20:62327996..62328013,+#_7247bb01e243dc11a7e193a0fcf8c785p1@TNFRSF6B
5.83e-34FFCP PHASE1:Hg19::chr19:54412517..54412583,+#_32e5739b42452bed9f8871eeaf68ef37p1@CACNG7
5.83e-34FFCP PHASE2:Hg19::chr19:54412517..54412583,+#_32e5739b42452bed9f8871eeaf68ef37p1@CACNG7
6.77e-34FFCP PHASE2:Hg19::chr3:48130707..48130789,-#_f3359f65decc719e81520fefbf16940cp4@MAP4
6.77e-34FFCP PHASE1:Hg19::chr3:48130707..48130789,-#_f3359f65decc719e81520fefbf16940cp4@MAP4
6.98e-34FFCP PHASE1:Hg19::chr1:20812690..20812763,-#_f6ddfe23ae253a18cd33a0f39bdec1f1p1@CAMK2N1
6.98e-34FFCP PHASE2:Hg19::chr1:20812690..20812763,-#_f6ddfe23ae253a18cd33a0f39bdec1f1p1@CAMK2N1
7.1e-34FFCP PHASE2:Hg19::chr15:44487453..44487476,-#_b8bfe0fad7d0414fac3ffdff69461401p1@FRMD5
7.1e-34FFCP PHASE1:Hg19::chr15:44487453..44487476,-#_b8bfe0fad7d0414fac3ffdff69461401p1@FRMD5
7.38e-34FFCP PHASE1:Hg19::chr3:48130317..48130396,-#_0c9d39bce6441dc126d8ebe65a1d0411p1@MAP4
7.38e-34FFCP PHASE2:Hg19::chr3:48130317..48130396,-#_0c9d39bce6441dc126d8ebe65a1d0411p1@MAP4
1.04e-33FFCP PHASE1:Hg19::chr4:145567767..145567851,+#_c533dd61da023fcc3397d60d6362d76ap2@HHIP
1.04e-33FFCP PHASE2:Hg19::chr4:145567767..145567851,+#_c533dd61da023fcc3397d60d6362d76ap2@HHIP
1.1e-33FFCP PHASE2:Hg19::chrX:134166376..134166394,+#_aeea9698803872a86308e3c5d059a967p1@FAM127A
1.1e-33FFCP PHASE1:Hg19::chrX:134166376..134166394,+#_aeea9698803872a86308e3c5d059a967p1@FAM127A
1.3e-33FFCP PHASE1:Hg19::chr16:765092..765169,+#_81e346a25af6657a024e1d1a5777b4b8p1@METRN
1.3e-33FFCP PHASE2:Hg19::chr16:765092..765169,+#_81e346a25af6657a024e1d1a5777b4b8p1@METRN
2.62e-33FFCP PHASE1:Hg19::chr20:30310656..30310685,-#_c036e7731b57609858a77b945ebc32c7p1@BCL2L1
2.62e-33FFCP PHASE2:Hg19::chr20:30310656..30310685,-#_c036e7731b57609858a77b945ebc32c7p1@BCL2L1
2.64e-33FFCP PHASE1:Hg19::chr17:40118805..40118822,+#_d1700755df18079359a05c7a79779855p1@CNP
2.64e-33FFCP PHASE2:Hg19::chr17:40118805..40118822,+#_d1700755df18079359a05c7a79779855p1@CNP
3.45e-33FFCP PHASE2:Hg19::chr19:54411852..54411908,+#_dd443c543f7d59d3111d1f1d88231ba1p@chr19:54411852..54411908, +
3.45e-33FFCP PHASE1:Hg19::chr19:54411852..54411908,+#_dd443c543f7d59d3111d1f1d88231ba1p@chr19:54411852..54411908, +
5.04e-33FFCP PHASE1:Hg19::chr19:48281989..48282000,+#_7c7f4235f6fe96f0f1cb34b65a8a680cp3@SEPW1
5.04e-33FFCP PHASE2:Hg19::chr19:48281989..48282000,+#_7c7f4235f6fe96f0f1cb34b65a8a680cp3@SEPW1
5.07e-33FFCP PHASE2:Hg19::chr10:15413035..15413131,-#_c2c031cbc2424415df5f84a4f6c9d3e5p1@FAM171A1
5.07e-33FFCP PHASE1:Hg19::chr10:15413035..15413131,-#_c2c031cbc2424415df5f84a4f6c9d3e5p1@FAM171A1
6.43e-33FFCP PHASE1:Hg19::chr3:170139006..170139041,+#_e0d7b51186099bf4b57071e5644d7652p3@CLDN11
6.43e-33FFCP PHASE2:Hg19::chr3:170139006..170139041,+#_e0d7b51186099bf4b57071e5644d7652p3@CLDN11
7.01e-33FFCP PHASE1:Hg19::chr1:79472365..79472443,-#_1f75cce124d0a4a8d40448a5bb660d6ep1@ELTD1
7.01e-33FFCP PHASE2:Hg19::chr1:79472365..79472443,-#_1f75cce124d0a4a8d40448a5bb660d6ep1@ELTD1
7.85e-33FFCP PHASE2:Hg19::chr19:46105411..46105481,-#_8ba4b2e8346a702180e8669bcd9c5e9bp1@GPR4, p2@OPA3
7.85e-33FFCP PHASE1:Hg19::chr19:46105411..46105481,-#_8ba4b2e8346a702180e8669bcd9c5e9bp1@GPR4, p2@OPA3
7.9e-33FFCP PHASE2:Hg19::chr2:27718052..27718127,-#_7f2b84ed99e5b900ec254f1561b0a19fp1@FNDC4
7.9e-33FFCP PHASE1:Hg19::chr2:27718052..27718127,-#_7f2b84ed99e5b900ec254f1561b0a19fp1@FNDC4
8.08e-33FFCP PHASE1:Hg19::chr16:56651382..56651426,+#_d368a47b005a700553d0b0fa2d28da0dp1@MT1L, p1@MT1M
8.08e-33FFCP PHASE2:Hg19::chr16:56651382..56651426,+#_d368a47b005a700553d0b0fa2d28da0dp1@MT1L, p1@MT1M
8.99e-33FFCP PHASE1:Hg19::chr3:52001396..52001425,-#_633feca8d738796d4c888a7fe05167a0p4@PCBP4
8.99e-33FFCP PHASE2:Hg19::chr3:52001396..52001425,-#_633feca8d738796d4c888a7fe05167a0p4@PCBP4
1.07e-32FFCP PHASE1:Hg19::chr15:68871309..68871354,+#_5b0778ac97e7e2dce2378219f22da5d9p2@CORO2B
1.07e-32FFCP PHASE2:Hg19::chr15:68871309..68871354,+#_5b0778ac97e7e2dce2378219f22da5d9p2@CORO2B
1.46e-32FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_d935bac1bfa3af62d078da13a5c86c5bp1@NFIB
1.46e-32FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_d935bac1bfa3af62d078da13a5c86c5bp1@NFIB
2.39e-32FFCP PHASE1:Hg19::chr17:19265883..19265958,-#_55c028227b7f2e0eefe90fe9dd1700f7p1@B9D1
2.39e-32FFCP PHASE2:Hg19::chr17:19265883..19265958,-#_55c028227b7f2e0eefe90fe9dd1700f7p1@B9D1
2.53e-32FFCP PHASE2:Hg19::chr1:153581416..153581458,-#_6a0b8866da068cd9998d37668364adf3p4@S100A16
2.53e-32FFCP PHASE1:Hg19::chr1:153581416..153581458,-#_6a0b8866da068cd9998d37668364adf3p4@S100A16

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