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{{UBERON
{{UBERON
|id=UBERON:0000065
|alt_id=
|name=respiratory tract
|namespace=
|def="anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm]
|xref=EHDAA:1568;;EHDAA:2219;;EHDAA2:0001606;;EMAPA:16737;;MESH:A.04;;OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA;;SCTID:361110005;;VHOG:0000393
|is_a=UBERON:0000061;;UBERON:0004119
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0000925
|develops_from=UBERON:0007026;;UBERON:0008947
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000065
|is_a=UBERON:0001005 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|name=respiratory tract
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001004
|part_of=UBERON:0001004
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=EHDAA2:0001606;;EHDAA:1568;;EHDAA:2219;;EMAPA:16737;;MESH:A.04;;OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA;;SCTID:361110005;;VHOG:0000393
}}
}}

Latest revision as of 17:05, 12 September 2014

Name:respiratory tract
Namespace:FANTOM
Definition:"anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm]
Xrefs:
links:

EHDAA2:0001606
EHDAA:1568
EHDAA:2219
EMAPA:16737
MESH:A.04
OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA
SCTID:361110005

VHOG:0000393

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001005(respiratory airway),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0007026(primitive gut),UBERON:0008947(respiratory primordium)
part_of:UBERON:0001004(respiratory system)



Children

part of:UBERON:0000072 (segment of respiratory tract),UBERON:0000117 (respiratory tube),UBERON:0001737 (larynx),CL:0002368 (respiratory epithelial cell),UBERON:0004802 (respiratory tract epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000065 (respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.27e-40FFCP PHASE2:Mm9::chr2:26212358..26212425,-#_0225589fa37d78424796a3e1d9eee75ap@chr2:26212358..26212425, -
1.27e-40FFCP PHASE1:Mm9::chr2:26212358..26212425,-#_0225589fa37d78424796a3e1d9eee75ap@chr2:26212358..26212425, -
4.01e-37FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_757fde99c9d877af44b6f2657ebe2109p4@uc009bpa.1
4.01e-37FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_757fde99c9d877af44b6f2657ebe2109p4@uc009bpa.1
6.88e-37FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_d35526877e60316eb714ab496ce28cadp8@uc009bpa.1
6.88e-37FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_d35526877e60316eb714ab496ce28cadp8@uc009bpa.1
1.84e-35FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_a7018805ad22d379ec34124d9bcd80f7p1@ENSMUST00000103288, p1@uc009bpl.1
1.84e-35FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_a7018805ad22d379ec34124d9bcd80f7p1@ENSMUST00000103288, p1@uc009bpl.1
2.88e-35FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_a2ac2e8d2eb2e7762c9c7f4ff6f1cb47p5@Tcf7
2.88e-35FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_a2ac2e8d2eb2e7762c9c7f4ff6f1cb47p5@Tcf7
6.17e-35FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_79fe887cf110986e31772323d3cc8ed6p@chr6:41491752..41491776, -
6.17e-35FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_79fe887cf110986e31772323d3cc8ed6p@chr12:108361918..108361930, -
6.17e-35FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_79fe887cf110986e31772323d3cc8ed6p@chr6:41491752..41491776, -
6.17e-35FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_79fe887cf110986e31772323d3cc8ed6p@chr12:108361918..108361930, -
7.27e-35FFCP PHASE2:Mm9::chr6:33991787..33991793,-#_94f04d723911a86521a248f2c3d0fd90p@chr6:33991787..33991793, -
7.27e-35FFCP PHASE1:Mm9::chr6:33991787..33991793,-#_94f04d723911a86521a248f2c3d0fd90p@chr6:33991787..33991793, -
5.9e-34FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_5d4e6f12a190a89fc229ef1fe93d6bbcp2@ENSMUST00000103283
5.9e-34FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_5d4e6f12a190a89fc229ef1fe93d6bbcp2@ENSMUST00000103283
5.93e-34FFCP PHASE2:Hg19::chr2:234590530..234590553,+#_7ed0399b8bf25876d4dbb1f560d5eefbp1@UGT1A7
5.93e-34FFCP PHASE1:Hg19::chr2:234590530..234590553,+#_7ed0399b8bf25876d4dbb1f560d5eefbp1@UGT1A7
6.41e-34FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_ec72253c8dc8e80f112fad940fbfd0dbp2@ALDH3A1
6.41e-34FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_ec72253c8dc8e80f112fad940fbfd0dbp2@ALDH3A1
6.71e-34FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_216f0dbf4aba502b0b1c4c808523d1aap1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
6.71e-34FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_216f0dbf4aba502b0b1c4c808523d1aap1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
2.01e-33FFCP PHASE1:Mm9::chr7:25692688..25692751,+#_1172f61d5bb29f290b7bc335dd5863ecp5@Arhgef1
2.01e-33FFCP PHASE2:Mm9::chr7:25692688..25692751,+#_1172f61d5bb29f290b7bc335dd5863ecp5@Arhgef1
2.39e-33FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_47760f89575d92dded6f4b1041cd5bfbp@chr6:41494001..41494028, +
2.39e-33FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_47760f89575d92dded6f4b1041cd5bfbp@chr6:41494001..41494028, +
3.07e-33FFCP PHASE2:Mm9::chr12:74842928..74842966,+#_a94d5051d441cda95224ed3263146d03p@chr12:74842928..74842966, +
3.07e-33FFCP PHASE1:Mm9::chr12:74842928..74842966,+#_a94d5051d441cda95224ed3263146d03p@chr12:74842928..74842966, +
3.11e-33FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_f700f555f7aab2ad0ef7b35ad6503c48p@chr9:44807434..44807445, -
3.11e-33FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_f700f555f7aab2ad0ef7b35ad6503c48p@chr9:44807434..44807445, -
3.34e-33FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_d4349235969f8c8f9e0babe1aa5b19b0p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
3.34e-33FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_d4349235969f8c8f9e0babe1aa5b19b0p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
3.92e-33FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_d342e891598ef97108db1cbb7f7d0c62p1@ENSMUST00000103298, p1@uc009bpy.1
3.92e-33FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_d342e891598ef97108db1cbb7f7d0c62p1@ENSMUST00000103298, p1@uc009bpy.1
4.06e-33FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_4c37b65701242cad00e994d62ba95f65p11@Prkcq
4.06e-33FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_4c37b65701242cad00e994d62ba95f65p11@Prkcq
5.05e-33FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_b7e0277977d563cbc6bb34b46dcf5816p@chr14:54791784..54791787, +
5.05e-33FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_b7e0277977d563cbc6bb34b46dcf5816p@chr14:54791784..54791787, +
5.87e-33FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_a492ff4bb095d9a0311f17e690926ad0p@chr9:44809185..44809215, -
5.87e-33FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_a492ff4bb095d9a0311f17e690926ad0p@chr9:44809185..44809215, -
6.97e-33FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_c730a3f2e2195943a27f809559216c4dp1@ENSMUST00000103263
6.97e-33FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_c730a3f2e2195943a27f809559216c4dp1@ENSMUST00000103263
7.58e-33FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_9f9e1d514384a4a68e02b97b34683df0p@chr9:44793518..44793537, +
7.58e-33FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_9f9e1d514384a4a68e02b97b34683df0p@chr9:44793518..44793537, +
8.76e-33FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_a1c440179f86099668cfce882ac3a889p@chr6:41071548..41071565, +
8.76e-33FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_a1c440179f86099668cfce882ac3a889p@chr6:41071548..41071565, +
9.65e-33FFCP PHASE1:Hg19::chr11:3147806..3147811,-#_ca784f551253420253778b25137c2fedp7@OSBPL5
9.65e-33FFCP PHASE2:Hg19::chr11:3147806..3147811,-#_ca784f551253420253778b25137c2fedp7@OSBPL5
1.01e-32FFCP PHASE1:Mm9::chr6:41483853..41483880,+#_ab52b3acb896c491463bb8a5e099c789p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1
1.01e-32FFCP PHASE2:Mm9::chr6:41483853..41483880,+#_ab52b3acb896c491463bb8a5e099c789p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1
1.09e-32FFCP PHASE1:Hg19::chr2:233246793..233246841,-#_7c359682cf90df270a1a0beb4abbc271p1@ENST00000441266
1.09e-32FFCP PHASE1:Hg19::chr17:79098633..79098647,-#_7c359682cf90df270a1a0beb4abbc271p@chr17:79098633..79098647, -
1.09e-32FFCP PHASE1:Hg19::chr2:233246932..233246943,+#_7c359682cf90df270a1a0beb4abbc271p6@ALPP
1.09e-32FFCP PHASE2:Hg19::chr2:53732986..53732989,-#_7c359682cf90df270a1a0beb4abbc271p@chr2:53732986..53732989, -
1.09e-32FFCP PHASE2:Hg19::chr8:128241234..128241241,-#_7c359682cf90df270a1a0beb4abbc271p7@uc003ysb.2
1.09e-32FFCP PHASE2:Hg19::chr2:233244912..233244922,+#_7c359682cf90df270a1a0beb4abbc271p2@AK297894
1.09e-32FFCP PHASE2:Hg19::chr17:79098633..79098647,-#_7c359682cf90df270a1a0beb4abbc271p@chr17:79098633..79098647, -
1.09e-32FFCP PHASE2:Hg19::chr2:233244473..233244503,+#_7c359682cf90df270a1a0beb4abbc271p1@AK297894
1.09e-32FFCP PHASE1:Hg19::chr2:233244912..233244922,+#_7c359682cf90df270a1a0beb4abbc271p2@AK297894
1.09e-32FFCP PHASE2:Hg19::chr2:233246793..233246841,-#_7c359682cf90df270a1a0beb4abbc271p1@ENST00000441266
1.09e-32FFCP PHASE2:Hg19::chr16:87869864..87869878,+#_7c359682cf90df270a1a0beb4abbc271p@chr16:87869864..87869878, +
1.09e-32FFCP PHASE1:Hg19::chr16:87869864..87869878,+#_7c359682cf90df270a1a0beb4abbc271p@chr16:87869864..87869878, +
1.09e-32FFCP PHASE1:Hg19::chr8:128241234..128241241,-#_7c359682cf90df270a1a0beb4abbc271p7@uc003ysb.2
1.09e-32FFCP PHASE2:Hg19::chr2:233246459..233246472,+#_7c359682cf90df270a1a0beb4abbc271p9@ALPP
1.09e-32FFCP PHASE2:Hg19::chr2:233246932..233246943,+#_7c359682cf90df270a1a0beb4abbc271p6@ALPP
1.09e-32FFCP PHASE1:Hg19::chr2:53732986..53732989,-#_7c359682cf90df270a1a0beb4abbc271p@chr2:53732986..53732989, -
1.09e-32FFCP PHASE1:Hg19::chr2:233246459..233246472,+#_7c359682cf90df270a1a0beb4abbc271p9@ALPP
1.09e-32FFCP PHASE1:Hg19::chr2:233244473..233244503,+#_7c359682cf90df270a1a0beb4abbc271p1@AK297894
1.36e-32FFCP PHASE2:Hg19::chr8:128270900..128270912,-#_d04a5900af3661ac046ae6c1fbe3c361p@chr8:128270900..128270912, -
1.36e-32FFCP PHASE1:Hg19::chr8:128270900..128270912,-#_d04a5900af3661ac046ae6c1fbe3c361p@chr8:128270900..128270912, -
1.51e-32FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_65f99dbe8dcedd1c2defe64cae850b43p5@Themis
1.51e-32FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_65f99dbe8dcedd1c2defe64cae850b43p5@Themis
1.65e-32FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_d58fc58bad9f9060ca4d11adc4d5efdcp5@uc009bpa.1
1.65e-32FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_d58fc58bad9f9060ca4d11adc4d5efdcp5@uc009bpa.1
2.0e-32FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_4066de38207d39394e6cd52d44126a9cp2@uc009bnp.1, p2@uc012eki.1
2.0e-32FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_4066de38207d39394e6cd52d44126a9cp2@uc009bnp.1, p2@uc012eki.1
1.12e-31FFCP PHASE1:Mm9::chr6:124838183..124838199,-#_0663b857720e253bfd644745c5f83b40p2@Cd4
1.12e-31FFCP PHASE2:Mm9::chr6:124838183..124838199,-#_0663b857720e253bfd644745c5f83b40p2@Cd4
2.1e-31FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_34324825cc63956ae8cea5b1988c804dp@chr14:61328148..61328173, +
2.1e-31FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_34324825cc63956ae8cea5b1988c804dp@chr14:61328148..61328173, +
2.46e-31FFCP PHASE1:Hg19::chr3:161318448..161318456,+#_140ba304ca67f2179728d82a8e770435p@chr3:161318448..161318456, +
2.46e-31FFCP PHASE2:Hg19::chr3:161318448..161318456,+#_140ba304ca67f2179728d82a8e770435p@chr3:161318448..161318456, +
2.74e-31FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_b0914268992de8baf057edaefe4ebf26p1@uc012ekr.1
2.74e-31FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_b0914268992de8baf057edaefe4ebf26p1@uc012ekr.1
3.12e-31FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_fb2d885d1bfd4a2947eff73b23416cf6p2@1810009J06Rik
3.12e-31FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_fb2d885d1bfd4a2947eff73b23416cf6p2@1810009J06Rik
3.72e-31FFCP PHASE2:Mm9::chr11:52067405..52067434,-#_28f3d7a669795e587c52f87d6948fb56p@chr11:52067405..52067434, -
3.72e-31FFCP PHASE1:Mm9::chr11:52067405..52067434,-#_28f3d7a669795e587c52f87d6948fb56p@chr11:52067405..52067434, -
3.88e-31FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_eb0841da24757e331389733191f2f04bp1@uc012ekk.1
3.88e-31FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_eb0841da24757e331389733191f2f04bp1@uc012ekk.1
4.24e-31FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_eac5aabcaae768eeefdfa6d034443435p3@uc009bpo.1, p3@uc009bpp.1
4.24e-31FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_eac5aabcaae768eeefdfa6d034443435p3@uc009bpo.1, p3@uc009bpp.1
4.24e-31FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_eac5aabcaae768eeefdfa6d034443435p1@ENSMUST00000103265
4.24e-31FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_eac5aabcaae768eeefdfa6d034443435p1@ENSMUST00000103265
4.43e-31FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_6312009f85f5c5b47698d786c68254e9p@chr7:133512043..133512060, -
4.43e-31FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_6312009f85f5c5b47698d786c68254e9p@chr7:133512043..133512060, -
4.75e-31FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_4fe593f1f36b4459e8ed018dba9f316bp2@uc009bpa.1
4.75e-31FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_4fe593f1f36b4459e8ed018dba9f316bp2@uc009bpa.1

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