Personal tools

FFCP PHASE1:Mm9::chr9:40263704..40263718,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{FFCP |id=chr9:40263704..40263718,- |short_description=p9@Gramd1b |description=CAGE_peak_9_at_Gramd1b_5end |association_with_transcript=-355bp_to_ENSMUST00000045682,NM_17...")
 
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|id=chr9:40263704..40263718,-
|DHSsupport=NA
|short_description=p9@Gramd1b
|DPIdataset=NA
|description=CAGE_peak_9_at_Gramd1b_5end
|association_with_transcript=-355bp_to_ENSMUST00000045682,NM_172768,uc009ozq.1_5end
|EntrezGene=235283
|EntrezGene=235283
|HGNC=
|HGNC=
|MCL_coexpression_id=2493
|TSSclassifier=NA
|UniProt=Q80TI0
|UniProt=Q80TI0
|association_with_transcript=-355bp_to_ENSMUST00000045682,NM_172768,uc009ozq.1_5end
|cluster_id=chr9:40263704..40263718,-
|description=CAGE_peak_9_at_Gramd1b_5end
|id=chr9:40263704..40263718,-
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=CL:0000624,7.97e-16,8;CL:0000791,5.95e-14,9;CL:0000789,5.95e-14,9;CL:0002420,5.95e-14,9;CL:0002419,5.95e-14,9;CL:0000790,5.95e-14,9;CL:0000893,8.02e-12,6;CL:0002489,8.02e-12,6;CL:0000898,8.02e-12,6;CL:0000809,8.02e-12,6;CL:0000810,8.02e-12,6;CL:0000895,8.02e-12,6;CL:0000808,8.02e-12,6;CL:0000894,8.02e-12,6;CL:0000806,8.02e-12,6;CL:0000807,8.02e-12,6;CL:0000805,8.02e-12,6;CL:0002425,8.02e-12,6;CL:0002436,8.02e-12,6;CL:0002427,8.02e-12,6;CL:0002428,8.02e-12,6;CL:0002429,8.02e-12,6;CL:0002433,8.02e-12,6;CL:0002431,8.02e-12,6;CL:0002432,8.02e-12,6;CL:0000084,3.17e-11,11;CL:0000827,3.17e-11,11;CL:0000838,3.34e-10,12;CL:0000542,2.44e-09,13;CL:0000051,2.44e-09,13;CL:0000738,6.73e-07,17;CL:0002087,6.73e-07,17
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0000153!9.98e-12!94;UBERON:0007811!3.04e-11!86;UBERON:0002791!3.73e-08!29;UBERON:0003528!3.73e-08!29;UBERON:0001893!3.73e-08!29;UBERON:0000956!6.23e-08!21;UBERON:0001869!6.23e-08!21;UBERON:0000203!6.23e-08!21;UBERON:0000064!2.73e-07!99;UBERON:0002021!2.81e-07!10;UBERON:0000411!2.81e-07!10;UBERON:0001950!2.81e-07!10;UBERON:0002346!3.03e-07!71;UBERON:0003075!3.03e-07!71;UBERON:0007284!3.03e-07!71;UBERON:0002369!4.60e-07!7;UBERON:0006858!4.60e-07!7;UBERON:0000955!7.59e-07!50;UBERON:0006238!7.59e-07!50;UBERON:0000991!8.59e-07!18;UBERON:0005564!8.59e-07!18;UBERON:0000033!8.83e-07!63
|ontology_enrichment_uberon_v019_2=UBERON:0002369,2.29e-19,7;UBERON:0006858,2.29e-19,7;UBERON:0000473,7.94e-14,14;UBERON:0004176,9.89e-14,17;UBERON:0009196,9.89e-14,17;UBERON:0009117,9.89e-14,17;UBERON:0000991,7.36e-13,18;UBERON:0005564,7.36e-13,18;UBERON:0003135,8.55e-13,15;UBERON:0003101,6.84e-12,16;UBERON:0000079,6.84e-12,16;UBERON:0002021,2.99e-11,10;UBERON:0000411,2.99e-11,10;UBERON:0001950,2.99e-11,10;UBERON:0003133,3.67e-09,24;UBERON:0003064,3.96e-09,14;UBERON:0005156,2.61e-08,26;UBERON:0000990,2.61e-08,26;UBERON:0002619,4.38e-08,17;UBERON:0000956,5.90e-08,21;UBERON:0001869,5.90e-08,21;UBERON:0000203,5.90e-08,21;UBERON:0000926,5.46e-07,120;UBERON:0004120,5.46e-07,120;UBERON:0006603,5.46e-07,120
|phase1_expression=0.160148847104794,0,0,0.60492842261366,0.500895729946347,0,0.233612640595526,1.29123323441576,28.5801105967883,52.4304538961265,30.1343624076889,23.0541539496522,0.171200729931206,1.04904482902797,0,0,0,0,0.137114433605739,0.42438965179803,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418531630736908,0,1.0470474879476,0,0,0,0.125896817975577,0,0.183546752161682,0.782391344348039,0,0,0.194429899074283,0,0,0,1.45072428402269,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0.207379224616955,0.810035629990144,0.210324961351382,0,0,0.61245399607477,0.0958454710182364,0,0,0.127687338085188,0.46081959976873,0.131886287730194,0.274462930807229,1.04182674111352,0,0,0.15279824777681,0,0,0,0.075726193333184,0.0755715601067855,0,0.860423876981386,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0.22836775943812,0.258937883647172,8.01587550950054,4.16364784238726,17.9634632204163,14.9900073216438,15.2229866958149,18.34383831317,11.5613264023301,0,0.144599356919912,0,0,0,0,0,0.878342391034642,0.209446706813455,0,0,0,0,0.599162557619291,0.457500602818626,0.376963056338593,1.39059456153821,0.511430914660661,0,0.648965052271031,0.101839363850316,0.248813941220186,0.252722758433675,0.210441855886474,0,0.459804208866946,0.180062129805349,0.150704817835715,0,0.12811372028485,0.0937017245597288,0.258703370739016,0.215567992932842,0.567318240503458,0.527853372491847,0,0.278047249225598,0,0,0.995171334092466,0,0,0.284163499395593,0.414251545071004,0,0,0.473489471170421,0.196764231747404,0.154267112887378,0,0.268273401399619,0.350296027101508,0.16455984991348,0.492502392237286,0.243206428637567,0.438599962275997,0.219550115291051,0.268412837520744,0.210289948564127,1.54356918568927,0.330418782983798,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.569003702859245,0.913988100877831,0,0,0,0.0701358198903186,0.126473074248515,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0.167506257441816,0,0,0,0.221464689648775,0.159454768657487,0.163863314715738,0.345369963731791,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0.963963949265421,3.26462195979018,0,0.162886959353576,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0.388076051348264,0,0,0,0,0,0.469343416127421,0,0,0.32977250588296,0,0.0603129249281559,0,0,0,0,0,0,0,0.376736914009382,0,0,0.169978429993855,0,0,0,0.158167996790568,0.203319467126849,0,0,0,0,0.0826534557253359,0,0,0,0.56369293868419,3.88743019714345,3.30916980914195,3.30567020184881,5.29555276258697,5.57555214119568,6.33729088687071,3.6457227756306,1.67774951081137,0,1.44015003128933,0.316011120628178,0,0.308132871494482,0.129920822977795,0,0.198681354781265,0.240390899039938,0.590758108698309,0.302899349844443,0.381034033274999,0.705783295957884,0.487289403698762,0.288635524920988,0.701261413089414,0.226730383615211,0,0.179427713218951,0.335769232728157,0,0.187682475451182,0,0,0,2.25900737046827,2.30162618253588,1.71868654031819,0.343706364687375,1.37016503954128,2.2661816921691,0.675022500231806,1.35096360967266,0.453142408984205,1.55328093525546,0,0,0,0,0,0.367687016900028,0,0,0,0.252697211763798,0,0,0,0.384150914429216,0.114870937911227,0,0.231768651889711,0,0.412085900803307,0.147198920134397,0,0,0,0.290692833264657,0.0941093804153306,0.25384382367503,0.182927972872773,0,0.135804113845862,0.561142271657738,0.355905054372522,0.492522411877817,0,0.154936841185966,0,0.249810577937946,0,0,0,0,0
|phase1_expression=0.160148847104794,0,0,0.60492842261366,0.500895729946347,0,0.233612640595526,1.29123323441576,28.5801105967883,52.4304538961265,30.1343624076889,23.0541539496522,0.171200729931206,1.04904482902797,0,0,0,0,0.137114433605739,0.42438965179803,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418531630736908,0,1.0470474879476,0,0,0,0.125896817975577,0,0.183546752161682,0.782391344348039,0,0,0.194429899074283,0,0,0,1.45072428402269,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0.207379224616955,0.810035629990144,0.210324961351382,0,0,0.61245399607477,0.0958454710182364,0,0,0.127687338085188,0.46081959976873,0.131886287730194,0.274462930807229,1.04182674111352,0,0,0.15279824777681,0,0,0,0.075726193333184,0.0755715601067855,0,0.860423876981386,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0.22836775943812,0.258937883647172,8.01587550950054,4.16364784238726,17.9634632204163,14.9900073216438,15.2229866958149,18.34383831317,11.5613264023301,0,0.144599356919912,0,0,0,0,0,0.878342391034642,0.209446706813455,0,0,0,0,0.599162557619291,0.457500602818626,0.376963056338593,1.39059456153821,0.511430914660661,0,0.648965052271031,0.101839363850316,0.248813941220186,0.252722758433675,0.210441855886474,0,0.459804208866946,0.180062129805349,0.150704817835715,0,0.12811372028485,0.0937017245597288,0.258703370739016,0.215567992932842,0.567318240503458,0.527853372491847,0,0.278047249225598,0,0,0.995171334092466,0,0,0.284163499395593,0.414251545071004,0,0,0.473489471170421,0.196764231747404,0.154267112887378,0,0.268273401399619,0.350296027101508,0.16455984991348,0.492502392237286,0.243206428637567,0.438599962275997,0.219550115291051,0.268412837520744,0.210289948564127,1.54356918568927,0.330418782983798,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.569003702859245,0.913988100877831,0,0,0,0.0701358198903186,0.126473074248515,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0.167506257441816,0,0,0,0.221464689648775,0.159454768657487,0.163863314715738,0.345369963731791,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0.963963949265421,3.26462195979018,0,0.162886959353576,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0.388076051348264,0,0,0,0,0,0.469343416127421,0,0,0.32977250588296,0,0.0603129249281559,0,0,0,0,0,0,0,0.376736914009382,0,0,0.169978429993855,0,0,0,0.158167996790568,0.203319467126849,0,0,0,0,0.0826534557253359,0,0,0,0.56369293868419,3.88743019714345,3.30916980914195,3.30567020184881,5.29555276258697,5.57555214119568,6.33729088687071,3.6457227756306,1.67774951081137,0,1.44015003128933,0.316011120628178,0,0.308132871494482,0.129920822977795,0,0.198681354781265,0.240390899039938,0.590758108698309,0.302899349844443,0.381034033274999,0.705783295957884,0.487289403698762,0.288635524920988,0.701261413089414,0.226730383615211,0,0.179427713218951,0.335769232728157,0,0.187682475451182,0,0,0,2.25900737046827,2.30162618253588,1.71868654031819,0.343706364687375,1.37016503954128,2.2661816921691,0.675022500231806,1.35096360967266,0.453142408984205,1.55328093525546,0,0,0,0,0,0.367687016900028,0,0,0,0.252697211763798,0,0,0,0.384150914429216,0.114870937911227,0,0.231768651889711,0,0.412085900803307,0.147198920134397,0,0,0,0.290692833264657,0.0941093804153306,0.25384382367503,0.182927972872773,0,0.135804113845862,0.561142271657738,0.355905054372522,0.492522411877817,0,0.154936841185966,0,0.249810577937946,0,0,0,0,0
|short_description=p9@Gramd1b
}}
}}

Latest revision as of 15:18, 26 September 2015

Short description:p9@Gramd1b
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_9_at_Gramd1b_5end
Coexpression cluster:MCL_coexpression_mm9:2493
Association with transcript: -355bp_to_ENSMUST00000045682, NM_172768, uc009ozq.1_5end
EntrezGene:Gramd1b
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p9@Gramd1b

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.16
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.60
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.50
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.23
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E91.29
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E728.58
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F252.43
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E630.13
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F123.05
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.17
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E81.05
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.14
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.42
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.43
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.42
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H31.05
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.13
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.18
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.78
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.00
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.19
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.00
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I91.45
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C30.00
Mouse Granule cells, donor2.CNhs12357.11731-123E30.00
Mouse Granule cells, donor3.CNhs12108.11636-122C70.00
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.34
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.00
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.21
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.81
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.21
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F10.00
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D50.00
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D20.61
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.10
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D30.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F30.13
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D70.46
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D40.13
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F40.27
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D81.04
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E40.00
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E50.00
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I60.15
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D60.00
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F60.00
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E10.00
Mouse Schwann, donor1.CNhs12507.11728-123D90.08
Mouse Schwann, donor2.CNhs12573.11746-123F90.08
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.86
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.00
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.25
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.23
accessory axillary lymph node, adult.CNhs10475.1063-29H90.26
adrenal gland, adult.CNhs10508.49-24D78.02
adrenal gland, embryo E14.CNhs11038.406-44C54.16
adrenal gland, embryo E16.CNhs11004.1254-43D617.96
adrenal gland, embryo E17.CNhs11043.1263-45I114.99
adrenal gland, embryo E18.CNhs11026.1262-18F515.22
adrenal gland, neonate N00.CNhs11191.1311-23C118.34
adrenal gland, neonate N25.CNhs11223.1377-27I311.56
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.14
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.00
bone (os femoris), neonate N16.CNhs11225.1525-43A60.00
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B20.88
cerebellum, neonate N30.CNhs11135.1395-42I20.21
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A40.60
corpus striatum, adult.CNhs10487.19-21D80.46
corpus striatum, neonate N00.CNhs11226.630-43F10.38
cortex, adult.CNhs10473.12-14D51.39
cortex, neonate N30.CNhs11107.1392-42F20.51
diencephalon, adult.CNhs10482.20-12F20.00
diencephalon, neonate N30.CNhs11201.1388-42B20.65
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.10
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.25
epididymis, adult.CNhs10490.58-23B20.25
eyeball, adult.CNhs10484.31-12G40.21
eyeball, embryo E12.CNhs11016.345-16C60.00
eyeball, embryo E14.CNhs10521.399-16E20.46
eyeball, embryo E15.CNhs10593.426-16C90.18
eyeball, embryo E17.CNhs11023.1261-18D40.15
eyeball, neonate N00.CNhs11207.633-15C60.00
eyeball, neonate N01.CNhs11140.1532-43E70.13
eyeball, neonate N02.CNhs11205.1551-44G80.09
eyeball, neonate N16.CNhs11188.777-19A20.26
forelimb, embryo E11.CNhs10596.335-25E20.22
forelimb, embryo E12.CNhs10600.359-14H20.57
forelimb, embryo E13.CNhs10589.384-1E20.53
forelimb, embryo E14.CNhs10577.413-26A80.00
forelimb, embryo E15.CNhs11007.437-20E70.28
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.00
gonad, embryo E13.CNhs11044.1564-45I61.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.28
heart, embryo E11.CNhs10586.331-24E90.41
heart, embryo E12.CNhs11015.353-12F50.00
heart, embryo E13.CNhs11013.376-3I90.00
heart, embryo E14.CNhs10597.403-26D40.47
heart, embryo E15.CNhs11017.431-16C80.20
heart, embryo E16.CNhs11021.457-17C60.15
heart, embryo E17.CNhs11025.479-18E50.00
heart, embryo E18.CNhs11030.1283-20G30.27
heart, neonate N00.CNhs11213.639-21E30.35
heart, neonate N03.CNhs11221.1349-25I20.16
heart, neonate N10.CNhs11118.749-24G10.49
heart, neonate N16.CNhs11209.782-15G10.24
heart, neonate N20.CNhs11127.821-26I60.44
heart, neonate N25.CNhs11196.1351-25D30.22
heart, neonate N30.CNhs11202.1390-42D20.27
hippocampus, adult.CNhs10478.13-16E80.21
hippocampus, neonate N00.CNhs11228.627-43G11.54
intestinal mucosa, adult.CNhs10506.860-29I30.33
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I50.00
intestine, embryo E13.CNhs11010.381-16D50.00
intestine, embryo E15.CNhs10602.976-16D80.00
intestine, embryo E16.CNhs10585.463-22H40.00
intestine, embryo E17.CNhs10582.482-18D30.00
intestine, embryo E18.CNhs10526.1289-20F70.19
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.00
intestine, neonate N06.CNhs11102.688-20B80.00
intestine, neonate N07.CNhs11095.720-20F20.00
intestine, neonate N10.CNhs11098.755-23A50.00
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.00
kidney, embryo E14.CNhs10606.411-4I90.57
kidney, embryo E15.CNhs10997.434-16F80.91
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.00
kidney, embryo E18.CNhs11001.1288-20C70.00
kidney, neonate N00.CNhs11214.646-21G70.07
kidney, neonate N10.CNhs11206.758-6D50.13
kidney, neonate N20.CNhs11113.832-19I10.00
kidney, neonate N25.CNhs11122.1353-25F30.16
kidney, neonate N30.CNhs11203.1385-42H10.00
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.00
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.00
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.00
lung, embryo E12.CNhs10522.354-16G20.19
lung, embryo E14.CNhs10604.404-26F80.00
lung, embryo E15.CNhs11020.432-17C50.00
lung, embryo E16.CNhs10998.458-17B60.00
lung, embryo E17.CNhs10605.480-44A60.17
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.00
lung, neonate N06.CNhs11212.683-20E50.00
lung, neonate N07.CNhs11111.715-19A30.22
lung, neonate N10.CNhs11219.750-23E60.16
lung, neonate N20.CNhs11109.822-18A40.16
lung, neonate N25.CNhs11119.1359-25C70.35
lung, neonate N30.CNhs11133.1394-42H20.00
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C20.16
medulla oblongata, neonate N30.CNhs11200.1396-42A30.12
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.00
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.00
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.22
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.00
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.00
olfactory brain, adult.CNhs10489.18-22I90.96
ovary, adult.CNhs10507.91-2I73.26
ovary, embryo E18.CNhs11040.505-44H70.00
ovary, neonate N00.CNhs11217.1299-22I40.16
oviduct, adult pregnant day01.CNhs10500.988-6G60.00
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.00
pancreas, embryo E15.CNhs11042.1556-45F20.00
pancreas, embryo E16.CNhs11003.460-26E50.00
pancreas, embryo E17.CNhs10599.1558-45G30.00
pancreas, embryo E18.CNhs10580.1535-43I70.00
pancreas, neonate N00.CNhs11105.645-26G90.26
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D80.00
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.00
pituitary gland, embryo E12.CNhs11018.346-16E60.00
pituitary gland, embryo E13.CNhs11009.370-44C70.39
pituitary gland, embryo E14.CNhs11037.398-44A50.00
pituitary gland, embryo E15.CNhs10592.427-16B90.00
pituitary gland, embryo E16.CNhs11036.449-43F60.00
pituitary gland, embryo E17.CNhs11039.1265-44F50.00
pituitary gland, neonate N00.CNhs11190.1308-22E90.00
placenta, adult pregnant day10.CNhs10472.539-13I70.47
placenta, adult pregnant day17.CNhs10464.577-18G30.00
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.33
skin, neonate N00.CNhs11124.650-25G40.00
skin, neonate N03.CNhs11215.662-22H30.06
skin, neonate N06.CNhs11097.693-20I50.00
skin, neonate N10.CNhs11108.762-6C40.00
small intestine, neonate N16.CNhs11114.790-21I10.00
spinal cord, adult.CNhs10505.24-13C90.00
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C10.00
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.38
spleen, neonate N20.CNhs11112.824-19H10.00
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.17
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E30.16
stomach, embryo E15.CNhs10603.1252-16G80.20
stomach, embryo E16.CNhs11022.459-17D40.00
stomach, embryo E17.CNhs11006.1035-18D50.00
stomach, embryo E18.CNhs10999.1286-20C60.00
stomach, neonate N03.CNhs11193.1340-24B80.00
stomach, neonate N07.CNhs11210.718-18A90.08
stomach, neonate N25.CNhs11104.1355-25E40.00
stomach, neonate N30.CNhs11134.1386-42I10.00
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.56
testis, embryo E13.CNhs11031.389-23F53.89
testis, embryo E15.CNhs11034.443-27C53.31
testis, embryo E16.CNhs11033.470-26G53.31
testis, embryo E17.CNhs11029.486-18I55.30
testis, embryo E18.CNhs11027.503-18G55.58
testis, neonate N00.CNhs11189.1300-22B76.34
testis, neonate N07.CNhs11222.726-26I43.65
testis, neonate N10.CNhs11204.763-44D91.68
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E21.44
thymus, adult.CNhs10471.38-12B50.32
thymus, embryo E14.CNhs11041.402-44I40.00
thymus, embryo E15.CNhs11005.430-45I20.31
thymus, embryo E16.CNhs11002.456-26C50.13
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.20
thymus, neonate N02.CNhs11181.1541-43F80.24
thymus, neonate N03.CNhs11137.2104-43C70.59
thymus, neonate N06.CNhs11197.681-26C40.30
thymus, neonate N07.CNhs11211.713-19D30.38
thymus, neonate N10.CNhs11194.748-24E40.71
thymus, neonate N20.CNhs11186.820-7A20.49
thymus, neonate N25.CNhs11125.1362-25G70.29
thymus, neonate N30.CNhs11132.1393-42G20.70
tongue, adult.CNhs10499.32-1B40.23
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.18
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.34
urinary bladder, adult.CNhs10481.879-12E40.00
uterus, adult pregnant day19.CNhs10497.590-15F50.19
uterus, adult.CNhs10509.92-27E50.00
vagina, adult.CNhs10502.89-27D50.00
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A12.26
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A22.30
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A31.72
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D70.34
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A41.37
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A52.27
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A60.68
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A71.35
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A80.45
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A91.55
whole body, embryo E11.CNhs11014.324-5I80.00
whole body, embryo E12.CNhs10587.857-27C90.00
whole body, embryo E13.CNhs10512.372-23H20.00
whole body, embryo E14.5.CNhs10578.420-27D20.00
whole body, embryo E14.CNhs10519.395-14B10.00
whole body, embryo E16.CNhs10514.453-14F20.37
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.25
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.38
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.11
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.23
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G50.15
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G50.29
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.09
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.25
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.18
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.14
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G50.56
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.36
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.49
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.15
whole body, embryo E17.5.CNhs10513.490-9F90.00
whole body, embryo E17.CNhs10517.475-3I50.25
whole body, embryo E18.CNhs10516.493-3B30.00
whole body, neonate N00.CNhs10525.657-19C20.00
whole body, neonate N01.CNhs10576.659-23C60.00
whole body, neonate N06.CNhs10515.692-21D10.00
whole body, neonate N10.CNhs10518.761-6B40.00





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CD4-positive, alpha-beta T cell7.97e-168
mature alpha-beta T cell5.95e-149
alpha-beta T cell5.95e-149
immature T cell5.95e-149
mature T cell5.95e-149
immature alpha-beta T cell5.95e-149
thymocyte8.02e-126
double negative thymocyte8.02e-126
naive T cell8.02e-126
double-positive, alpha-beta thymocyte8.02e-126
CD4-positive, alpha-beta thymocyte8.02e-126
naive thymus-derived CD4-positive, alpha-beta T cell8.02e-126
DN4 thymocyte8.02e-126
DN1 thymic pro-T cell8.02e-126
DN2 thymocyte8.02e-126
DN3 thymocyte8.02e-126
immature single positive thymocyte8.02e-126
early T lineage precursor8.02e-126
mature CD4 single-positive thymocyte8.02e-126
resting double-positive thymocyte8.02e-126
double-positive blast8.02e-126
CD69-positive double-positive thymocyte8.02e-126
CD69-positive, CD4-positive single-positive thymocyte8.02e-126
CD4-positive, CD8-intermediate double-positive thymocyte8.02e-126
CD24-positive, CD4 single-positive thymocyte8.02e-126
T cell3.17e-1111
pro-T cell3.17e-1111
lymphoid lineage restricted progenitor cell3.34e-1012
lymphocyte2.44e-0913
common lymphoid progenitor2.44e-0913
leukocyte6.73e-0717
nongranular leukocyte6.73e-0717

Uber anatomy
Ontology termp-valuen
adrenal gland2.29e-197
adrenal/interrenal gland2.29e-197
testis7.94e-1414
external genitalia9.89e-1417
indifferent external genitalia9.89e-1417
indifferent gonad9.89e-1417
gonad7.36e-1318
gonad primordium7.36e-1318
male reproductive organ8.55e-1315
male organism6.84e-1216
male reproductive system6.84e-1216
occipital lobe2.99e-1110
visual cortex2.99e-1110
neocortex2.99e-1110
reproductive organ3.67e-0924
intermediate mesoderm3.96e-0914
reproductive structure2.61e-0826
reproductive system2.61e-0826
regional part of cerebral cortex4.38e-0817
cerebral cortex5.90e-0821
cerebral hemisphere5.90e-0821
pallium5.90e-0821
mesoderm5.46e-07120
mesoderm-derived structure5.46e-07120
presumptive mesoderm5.46e-07120
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr9:40263704..40263718,-&oldid=4260343"