FFCP PHASE1:Mm9::chr9:123169894..123169921,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:123169894..123169921,-
|short_description=p2@Tmem158
|description=CAGE_peak_2_at_Tmem158_5end
|association_with_transcript=0bp_to_ENSMUST00000068140,NM_001...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=72309 | |EntrezGene=72309 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=B2RTM1 | |UniProt=B2RTM1 | ||
|association_with_transcript=0bp_to_ENSMUST00000068140,NM_001002267,uc009sgb.1_5end | |||
|cluster_id=chr9:123169894..123169921,- | |||
|description=CAGE_peak_2_at_Tmem158_5end | |||
|id=chr9:123169894..123169921,- | |||
|ontology_enrichment_celltype=CL:0002319!8.11e-17!43;CL:0000221!1.30e-16!44;CL:0000133!1.30e-16!44;CL:0000055!1.82e-15!50;CL:0000540!6.23e-14!33;CL:0000047!6.23e-14!33;CL:0000031!6.23e-14!33;CL:0000404!6.23e-14!33;CL:0000393!7.76e-13!39;CL:0000211!7.76e-13!39;CL:0000117!1.09e-11!23;CL:0000337!1.09e-11!23;CL:0002321!1.93e-09!70;CL:0000220!1.93e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,7.12e-17,43;CL:0000221,1.15e-16,44;CL:0000133,1.15e-16,44;CL:0000540,5.61e-14,33;CL:0000047,5.61e-14,33;CL:0000031,5.61e-14,33;CL:0000404,5.61e-14,33;CL:0000393,7.06e-13,39;CL:0000211,7.06e-13,39;CL:0000117,1.00e-11,23;CL:0000337,1.00e-11,23;CL:0002321,1.05e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.87e-31!75;UBERON:0001016!3.87e-31!75;UBERON:0001017!5.32e-30!73;UBERON:0005743!5.32e-30!73;UBERON:0004121!3.18e-24!102;UBERON:0000924!3.18e-24!102;UBERON:0006601!3.18e-24!102;UBERON:0001049!2.73e-21!52;UBERON:0005068!2.73e-21!52;UBERON:0006241!2.73e-21!52;UBERON:0007135!2.73e-21!52;UBERON:0000955!3.90e-20!50;UBERON:0006238!3.90e-20!50;UBERON:0002616!1.65e-19!49;UBERON:0002346!9.66e-19!71;UBERON:0003075!9.66e-19!71;UBERON:0007284!9.66e-19!71;UBERON:0002020!1.51e-18!34;UBERON:0003080!1.13e-17!40;UBERON:0002780!3.32e-17!39;UBERON:0001890!3.32e-17!39;UBERON:0006240!3.32e-17!39;UBERON:0000033!1.67e-16!63;UBERON:0002791!9.08e-16!29;UBERON:0003528!9.08e-16!29;UBERON:0001893!9.08e-16!29;UBERON:0003056!7.03e-15!49;UBERON:0000956!1.80e-11!21;UBERON:0001869!1.80e-11!21;UBERON:0000203!1.80e-11!21;UBERON:0002619!5.00e-10!17;UBERON:0002021!7.72e-08!10;UBERON:0000411!7.72e-08!10;UBERON:0001950!7.72e-08!10;UBERON:0000153!8.20e-08!94;UBERON:0007811!2.55e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.01e-31,75;UBERON:0001017,4.18e-30,73;UBERON:0004121,1.52e-24,95;UBERON:0000924,1.52e-24,95;UBERON:0006601,1.52e-24,95;UBERON:0000073,1.69e-22,54;UBERON:0001049,2.31e-21,52;UBERON:0005068,2.31e-21,52;UBERON:0006241,2.31e-21,52;UBERON:0007135,2.31e-21,52;UBERON:0002346,2.03e-19,64;UBERON:0003075,2.03e-19,64;UBERON:0007284,2.03e-19,64;UBERON:0000955,6.48e-19,47;UBERON:0006238,6.48e-19,47;UBERON:0002020,1.30e-18,34;UBERON:0002616,2.70e-18,46;UBERON:0003080,9.83e-18,40;UBERON:0010371,1.07e-17,73;UBERON:0002780,2.90e-17,39;UBERON:0001890,2.90e-17,39;UBERON:0006240,2.90e-17,39;UBERON:0003528,8.05e-16,29;UBERON:0002791,8.05e-16,29;UBERON:0001893,8.05e-16,29;UBERON:0003056,9.51e-15,49;UBERON:0000956,1.65e-11,21;UBERON:0001869,1.65e-11,21;UBERON:0000203,1.65e-11,21;UBERON:0010314,4.07e-11,92;UBERON:0002619,4.66e-10,17;UBERON:0002021,7.32e-08,10;UBERON:0000411,7.32e-08,10;UBERON:0001950,7.32e-08,10 | |||
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| ||
|short_description=p2@Tmem158 | |||
}} | }} |
Latest revision as of 09:09, 26 September 2015
Short description: | p2@Tmem158 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tmem158_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000068140, NM_001002267, uc009sgb.1_5end |
EntrezGene: | Tmem158 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 7.12e-17 | 43 |
ectodermal cell | 1.15e-16 | 44 |
neurectodermal cell | 1.15e-16 | 44 |
neuron | 5.61e-14 | 33 |
neuronal stem cell | 5.61e-14 | 33 |
neuroblast | 5.61e-14 | 33 |
electrically signaling cell | 5.61e-14 | 33 |
electrically responsive cell | 7.06e-13 | 39 |
electrically active cell | 7.06e-13 | 39 |
CNS neuron (sensu Vertebrata) | 1.00e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.00e-11 | 23 |
embryonic cell | 1.05e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.01e-31 | 75 |
central nervous system | 4.18e-30 | 73 |
ectoderm-derived structure | 1.52e-24 | 95 |
ectoderm | 1.52e-24 | 95 |
presumptive ectoderm | 1.52e-24 | 95 |
regional part of nervous system | 1.69e-22 | 54 |
neural tube | 2.31e-21 | 52 |
neural rod | 2.31e-21 | 52 |
future spinal cord | 2.31e-21 | 52 |
neural keel | 2.31e-21 | 52 |
neurectoderm | 2.03e-19 | 64 |
neural plate | 2.03e-19 | 64 |
presumptive neural plate | 2.03e-19 | 64 |
brain | 6.48e-19 | 47 |
future brain | 6.48e-19 | 47 |
gray matter | 1.30e-18 | 34 |
regional part of brain | 2.70e-18 | 46 |
anterior neural tube | 9.83e-18 | 40 |
ecto-epithelium | 1.07e-17 | 73 |
regional part of forebrain | 2.90e-17 | 39 |
forebrain | 2.90e-17 | 39 |
future forebrain | 2.90e-17 | 39 |
brain grey matter | 8.05e-16 | 29 |
regional part of telencephalon | 8.05e-16 | 29 |
telencephalon | 8.05e-16 | 29 |
pre-chordal neural plate | 9.51e-15 | 49 |
cerebral cortex | 1.65e-11 | 21 |
cerebral hemisphere | 1.65e-11 | 21 |
pallium | 1.65e-11 | 21 |
structure with developmental contribution from neural crest | 4.07e-11 | 92 |
regional part of cerebral cortex | 4.66e-10 | 17 |
occipital lobe | 7.32e-08 | 10 |
visual cortex | 7.32e-08 | 10 |
neocortex | 7.32e-08 | 10 |