FFCP PHASE1:Mm9::chr6:48345651..48345687,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:48345651..48345687,+
|short_description=p2@Krba1
|description=CAGE_peak_2_at_Krba1_5end
|association_with_transcript=0bp_to_ENSMUST00000077093_5end
|Entre...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=77827 | |EntrezGene=77827 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1946 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z4B8 | |UniProt=D3Z4B8 | ||
|association_with_transcript=0bp_to_ENSMUST00000077093_5end | |||
|cluster_id=chr6:48345651..48345687,+ | |||
|description=CAGE_peak_2_at_Krba1_5end | |||
|id=chr6:48345651..48345687,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.35e-08!33;CL:0000047!3.35e-08!33;CL:0000031!3.35e-08!33;CL:0000404!3.35e-08!33;CL:0000117!9.50e-07!23;CL:0000337!9.50e-07!23;CL:0000221!9.62e-07!44;CL:0000133!9.62e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.51e-08,33;CL:0000047,2.51e-08,33;CL:0000031,2.51e-08,33;CL:0000404,2.51e-08,33;CL:0000117,7.59e-07,23;CL:0000337,7.59e-07,23;CL:0000221,9.13e-07,44;CL:0000133,9.13e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!3.43e-17!94;UBERON:0007811!6.41e-15!86;UBERON:0001017!3.40e-13!73;UBERON:0005743!3.40e-13!73;UBERON:0000073!2.66e-12!75;UBERON:0001016!2.66e-12!75;UBERON:0002346!3.55e-12!71;UBERON:0003075!3.55e-12!71;UBERON:0007284!3.55e-12!71;UBERON:0004121!4.43e-11!102;UBERON:0000924!4.43e-11!102;UBERON:0006601!4.43e-11!102;UBERON:0003056!5.55e-11!49;UBERON:0000033!6.49e-11!63;UBERON:0001049!1.12e-10!52;UBERON:0005068!1.12e-10!52;UBERON:0006241!1.12e-10!52;UBERON:0007135!1.12e-10!52;UBERON:0002780!5.74e-09!39;UBERON:0001890!5.74e-09!39;UBERON:0006240!5.74e-09!39;UBERON:0003080!5.99e-09!40;UBERON:0000955!7.12e-09!50;UBERON:0006238!7.12e-09!50;UBERON:0002616!2.22e-08!49;UBERON:0002020!1.31e-07!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.06e-13,73;UBERON:0002346,2.51e-13,64;UBERON:0003075,2.51e-13,64;UBERON:0007284,2.51e-13,64;UBERON:0001016,2.04e-12,75;UBERON:0010314,8.17e-12,92;UBERON:0004121,1.66e-11,95;UBERON:0000924,1.66e-11,95;UBERON:0006601,1.66e-11,95;UBERON:0010371,2.87e-11,73;UBERON:0003056,3.70e-11,49;UBERON:0001049,7.55e-11,52;UBERON:0005068,7.55e-11,52;UBERON:0006241,7.55e-11,52;UBERON:0007135,7.55e-11,52;UBERON:0000073,5.55e-10,54;UBERON:0000955,6.82e-10,47;UBERON:0006238,6.82e-10,47;UBERON:0002616,2.32e-09,46;UBERON:0002780,4.17e-09,39;UBERON:0001890,4.17e-09,39;UBERON:0006240,4.17e-09,39;UBERON:0003080,4.36e-09,40;UBERON:0000153,1.34e-08,43;UBERON:0002020,1.01e-07,34 | |||
|phase1_expression=6.56610273129655,0,0,0,1.00179145989269,0.671517087647559,0,4.9066862907799,3.23814060948833,2.57470978954193,1.54096171402954,1.59544317990673,4.28001824828014,5.85716696207283,0.666219523631325,0.404950534779652,0.699561878128147,1.41957974411207,1.64537320326887,0.84877930359606,6.29320347117916,0,0,0.639969691173627,0.22940928106717,0.57423196411502,1.29228598847722,0,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,0.577703239502549,0.664938581433969,0.204169356262369,0,0,0,0,0,0,1.38486499773135,1.01376931219515,0.367093504323363,2.34717403304412,2.8343270329458,1.75748946187577,1.36100929351998,2.51975558925653,2.87505128729943,1.34226084846189,3.62681071005672,2.68875039313971,1.28629718017973,0.286533439938757,1.03134418455488,6.87875966922632,3.70293685490423,6.33831403506179,1.69422266034566,1.77858959222228,0.449949858640699,0,0,2.69640099466564,1.92109152660777,6.32506635081714,6.34527910158946,4.20649922702764,4.28476476605705,4.19650227808066,5.63457676388789,6.70918297127655,7.35375029288017,1.10115880999389,2.29837208553338,1.22885226604995,6.72620067423989,7.13603620098795,6.77187381723788,1.95428099300967,4.50210088025344,2.13917546887534,7.07108605136802,4.12877874317399,3.35519002485541,0.681535739998656,1.13357340160178,1.73918693221007,0.860423876981386,0,0,1.94932925234301,0.896053774194671,1.54488862144927,0,0,0,3.94361575374705,0,0,0,0.432982082022428,0.506719730950197,0.505524445014783,1.1418387971906,1.55362730188303,0.890652834388949,4.68410382268567,2.74018930480927,1.15307748628029,2.41156224884196,2.58695155698551,1.25666591329675,1.23597483867187,1.01219549843938,0.884610551949874,0.970601099684455,0.883366073841574,0.969750506270444,0,3.22058876712702,3.97948742945565,0.255457055208591,0.479260498023681,0,0.635351135365324,2.69623150928681,4.11750542536764,9.67538511269056,3.47648640384553,3.58001640262463,3.1168206683934,3.73154905055843,3.7680564624617,1.99051152976149,1.0108910337347,1.05220927943237,4.03373373184381,5.28774840196988,3.06105620669094,3.31550599238573,6.12328492361951,5.38077625196369,5.71580519814346,4.65666067330228,5.82033580918674,8.32066752738405,6.862093842394,3.94552318369635,4.72680323683516,2.78601733217733,3.2925141825271,9.15557627365069,0,0.51469581422943,0,4.14251545071004,5.15957331958412,3.42117916775928,5.68187365404505,3.73852040320067,2.46827380619805,2.79040733700489,2.95100741539581,2.80236821681207,3.12663714835613,1.80584210487005,2.10778904819225,1.31579988682799,1.3173006917463,1.07365135008297,3.78521907415429,5.24813523134351,0,0.264450566663544,5.33220626338085,4.64473343720877,2.06187938115349,2.21851877085677,2.44615848229357,1.90225626112559,0.949058123089023,1.4822905925161,2.5133520880027,1.39269530428806,0.19496408711912,1.79763881730844,0.648414149624083,0.597423819763102,2.84501851429623,5.1411830674378,3.38123207019241,4.68398054044223,3.29719228184964,5.19005067188357,2.71917109634306,1.03327103585722,1.09899109488962,0.987177311374404,0.592905254174298,1.83529616287703,0.982794975566015,1.79889689907883,0.811440485554012,0.964708639009667,0.50925170356284,0.863088412352432,0.972811360650212,1.09824565275233,0,1.11642284300551,0.624075346229121,0.505157755894224,0.358794827043824,0.964887042726734,1.10851914099963,3.60033682363921,3.25929952884052,4.41337223015489,4.22442446919304,3.85264392116176,2.61848004974615,3.70753930929818,2.36452716159286,2.6575762757853,2.07291199254733,0.983179888294428,1.89953480052485,2.4590339958857,0,0,0,0.827810238914197,2.0871576698413,3.39913891117389,0.819674726883377,0.757412781613119,1.57754109708128,3.90438744296638,4.30846795465598,2.62865677747807,2.22798674082394,5.09537755419898,3.64329631507405,4.09158201075837,3.95287777946523,7.39039027770156,3.54850213020672,4.27357448801413,5.21238269931443,2.63952196756057,0,3.39892890616974,3.02323556964751,1.13163047853539,0.885905678642318,1.84461088766356,1.29214146584111,1.09060118843252,1.06949213515416,0.316036757935816,2.10837217149998,0,1.02131881726136,7.56256594931503,5.56242340265844,6.43011105094777,7.27094957933322,4.99432689285798,5.59466670047211,4.56697423671899,0.469343416127421,1.48282449604674,0,1.31909002353184,1.61464426695906,1.74907482291652,2.14870219205646,0.820704498725306,1.45740418314925,2.59595422814714,0.683483523191411,3.50857675537478,2.03713980106683,0.565105371014073,0.683471138605126,0.915112692826091,1.01987057996313,1.39951452323658,2.3493995546752,1.90934123603023,3.63786392618306,3.65975040828328,2.91614420218863,2.92723614420256,0.655087691238533,1.88810084938749,2.56225712748541,0.523511883968059,0.777689839750757,1.86401793926078,32.1304975049988,2.99033092087958,4.96375471371293,7.00024278038572,4.00395452780966,4.89972763923257,5.51579021635044,6.2498104725096,6.18670132111694,14.2534631287344,14.6895303191511,7.2682557744481,3.04087822935246,2.56777392912068,4.54722880422283,3.75956060901711,4.76835251475036,6.85114062263822,6.20296014133224,7.57248374611107,7.46826705218998,8.36857336635776,9.06358290879698,7.21588812302471,8.99952146798081,0.680191150845634,2.66383144048878,2.33256027184637,1.34307693091263,1.73870634628971,1.12609485270709,1.64836461840539,1.2862102744744,0,1.6942555278512,2.76195141904306,5.15605962095457,3.43706364687375,3.42541259885321,3.7769694869485,1.35004500046361,3.60256962579376,1.35942722695261,3.10656187051092,4.25528125095124,5.1873233542134,4.78054096111576,3.16038732188782,1.88651846365184,2.38996560985018,1.11123363900808,1.44224540067226,1.92551525755089,4.80124702351215,2.28131369901216,2.82939512079114,2.71560371662659,2.24088033417042,2.52716063404698,2.38146845641537,3.1288768005111,1.35036454324594,1.64834360321323,2.20798380201596,2.74295401908332,1.95223386775271,1.90748951957857,3.0522747492789,2.54095327121393,2.36920902096694,2.0122077016005,3.15683653725411,3.39510284614654,1.12228454331548,2.25406534435931,3.15214343601803,4.91077251803627,4.02835787083512,2.89359916471712,2.99772693525535,3.04111090979031,1.28922632428979,2.67803664896381,1.32354851471709,0.927471342481686 | |phase1_expression=6.56610273129655,0,0,0,1.00179145989269,0.671517087647559,0,4.9066862907799,3.23814060948833,2.57470978954193,1.54096171402954,1.59544317990673,4.28001824828014,5.85716696207283,0.666219523631325,0.404950534779652,0.699561878128147,1.41957974411207,1.64537320326887,0.84877930359606,6.29320347117916,0,0,0.639969691173627,0.22940928106717,0.57423196411502,1.29228598847722,0,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,0.577703239502549,0.664938581433969,0.204169356262369,0,0,0,0,0,0,1.38486499773135,1.01376931219515,0.367093504323363,2.34717403304412,2.8343270329458,1.75748946187577,1.36100929351998,2.51975558925653,2.87505128729943,1.34226084846189,3.62681071005672,2.68875039313971,1.28629718017973,0.286533439938757,1.03134418455488,6.87875966922632,3.70293685490423,6.33831403506179,1.69422266034566,1.77858959222228,0.449949858640699,0,0,2.69640099466564,1.92109152660777,6.32506635081714,6.34527910158946,4.20649922702764,4.28476476605705,4.19650227808066,5.63457676388789,6.70918297127655,7.35375029288017,1.10115880999389,2.29837208553338,1.22885226604995,6.72620067423989,7.13603620098795,6.77187381723788,1.95428099300967,4.50210088025344,2.13917546887534,7.07108605136802,4.12877874317399,3.35519002485541,0.681535739998656,1.13357340160178,1.73918693221007,0.860423876981386,0,0,1.94932925234301,0.896053774194671,1.54488862144927,0,0,0,3.94361575374705,0,0,0,0.432982082022428,0.506719730950197,0.505524445014783,1.1418387971906,1.55362730188303,0.890652834388949,4.68410382268567,2.74018930480927,1.15307748628029,2.41156224884196,2.58695155698551,1.25666591329675,1.23597483867187,1.01219549843938,0.884610551949874,0.970601099684455,0.883366073841574,0.969750506270444,0,3.22058876712702,3.97948742945565,0.255457055208591,0.479260498023681,0,0.635351135365324,2.69623150928681,4.11750542536764,9.67538511269056,3.47648640384553,3.58001640262463,3.1168206683934,3.73154905055843,3.7680564624617,1.99051152976149,1.0108910337347,1.05220927943237,4.03373373184381,5.28774840196988,3.06105620669094,3.31550599238573,6.12328492361951,5.38077625196369,5.71580519814346,4.65666067330228,5.82033580918674,8.32066752738405,6.862093842394,3.94552318369635,4.72680323683516,2.78601733217733,3.2925141825271,9.15557627365069,0,0.51469581422943,0,4.14251545071004,5.15957331958412,3.42117916775928,5.68187365404505,3.73852040320067,2.46827380619805,2.79040733700489,2.95100741539581,2.80236821681207,3.12663714835613,1.80584210487005,2.10778904819225,1.31579988682799,1.3173006917463,1.07365135008297,3.78521907415429,5.24813523134351,0,0.264450566663544,5.33220626338085,4.64473343720877,2.06187938115349,2.21851877085677,2.44615848229357,1.90225626112559,0.949058123089023,1.4822905925161,2.5133520880027,1.39269530428806,0.19496408711912,1.79763881730844,0.648414149624083,0.597423819763102,2.84501851429623,5.1411830674378,3.38123207019241,4.68398054044223,3.29719228184964,5.19005067188357,2.71917109634306,1.03327103585722,1.09899109488962,0.987177311374404,0.592905254174298,1.83529616287703,0.982794975566015,1.79889689907883,0.811440485554012,0.964708639009667,0.50925170356284,0.863088412352432,0.972811360650212,1.09824565275233,0,1.11642284300551,0.624075346229121,0.505157755894224,0.358794827043824,0.964887042726734,1.10851914099963,3.60033682363921,3.25929952884052,4.41337223015489,4.22442446919304,3.85264392116176,2.61848004974615,3.70753930929818,2.36452716159286,2.6575762757853,2.07291199254733,0.983179888294428,1.89953480052485,2.4590339958857,0,0,0,0.827810238914197,2.0871576698413,3.39913891117389,0.819674726883377,0.757412781613119,1.57754109708128,3.90438744296638,4.30846795465598,2.62865677747807,2.22798674082394,5.09537755419898,3.64329631507405,4.09158201075837,3.95287777946523,7.39039027770156,3.54850213020672,4.27357448801413,5.21238269931443,2.63952196756057,0,3.39892890616974,3.02323556964751,1.13163047853539,0.885905678642318,1.84461088766356,1.29214146584111,1.09060118843252,1.06949213515416,0.316036757935816,2.10837217149998,0,1.02131881726136,7.56256594931503,5.56242340265844,6.43011105094777,7.27094957933322,4.99432689285798,5.59466670047211,4.56697423671899,0.469343416127421,1.48282449604674,0,1.31909002353184,1.61464426695906,1.74907482291652,2.14870219205646,0.820704498725306,1.45740418314925,2.59595422814714,0.683483523191411,3.50857675537478,2.03713980106683,0.565105371014073,0.683471138605126,0.915112692826091,1.01987057996313,1.39951452323658,2.3493995546752,1.90934123603023,3.63786392618306,3.65975040828328,2.91614420218863,2.92723614420256,0.655087691238533,1.88810084938749,2.56225712748541,0.523511883968059,0.777689839750757,1.86401793926078,32.1304975049988,2.99033092087958,4.96375471371293,7.00024278038572,4.00395452780966,4.89972763923257,5.51579021635044,6.2498104725096,6.18670132111694,14.2534631287344,14.6895303191511,7.2682557744481,3.04087822935246,2.56777392912068,4.54722880422283,3.75956060901711,4.76835251475036,6.85114062263822,6.20296014133224,7.57248374611107,7.46826705218998,8.36857336635776,9.06358290879698,7.21588812302471,8.99952146798081,0.680191150845634,2.66383144048878,2.33256027184637,1.34307693091263,1.73870634628971,1.12609485270709,1.64836461840539,1.2862102744744,0,1.6942555278512,2.76195141904306,5.15605962095457,3.43706364687375,3.42541259885321,3.7769694869485,1.35004500046361,3.60256962579376,1.35942722695261,3.10656187051092,4.25528125095124,5.1873233542134,4.78054096111576,3.16038732188782,1.88651846365184,2.38996560985018,1.11123363900808,1.44224540067226,1.92551525755089,4.80124702351215,2.28131369901216,2.82939512079114,2.71560371662659,2.24088033417042,2.52716063404698,2.38146845641537,3.1288768005111,1.35036454324594,1.64834360321323,2.20798380201596,2.74295401908332,1.95223386775271,1.90748951957857,3.0522747492789,2.54095327121393,2.36920902096694,2.0122077016005,3.15683653725411,3.39510284614654,1.12228454331548,2.25406534435931,3.15214343601803,4.91077251803627,4.02835787083512,2.89359916471712,2.99772693525535,3.04111090979031,1.28922632428979,2.67803664896381,1.32354851471709,0.927471342481686 | ||
|short_description=p2@Krba1 | |||
}} | }} |
Latest revision as of 07:13, 27 September 2015
Short description: | p2@Krba1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Krba1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1946 |
Association with transcript: | 0bp_to_ENSMUST00000077093_5end |
EntrezGene: | Krba1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.51e-08 | 33 |
neuronal stem cell | 2.51e-08 | 33 |
neuroblast | 2.51e-08 | 33 |
electrically signaling cell | 2.51e-08 | 33 |
CNS neuron (sensu Vertebrata) | 7.59e-07 | 23 |
neuroblast (sensu Vertebrata) | 7.59e-07 | 23 |
ectodermal cell | 9.13e-07 | 44 |
neurectodermal cell | 9.13e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.06e-13 | 73 |
neurectoderm | 2.51e-13 | 64 |
neural plate | 2.51e-13 | 64 |
presumptive neural plate | 2.51e-13 | 64 |
nervous system | 2.04e-12 | 75 |
structure with developmental contribution from neural crest | 8.17e-12 | 92 |
ectoderm-derived structure | 1.66e-11 | 95 |
ectoderm | 1.66e-11 | 95 |
presumptive ectoderm | 1.66e-11 | 95 |
ecto-epithelium | 2.87e-11 | 73 |
pre-chordal neural plate | 3.70e-11 | 49 |
neural tube | 7.55e-11 | 52 |
neural rod | 7.55e-11 | 52 |
future spinal cord | 7.55e-11 | 52 |
neural keel | 7.55e-11 | 52 |
regional part of nervous system | 5.55e-10 | 54 |
brain | 6.82e-10 | 47 |
future brain | 6.82e-10 | 47 |
regional part of brain | 2.32e-09 | 46 |
regional part of forebrain | 4.17e-09 | 39 |
forebrain | 4.17e-09 | 39 |
future forebrain | 4.17e-09 | 39 |
anterior neural tube | 4.36e-09 | 40 |
anterior region of body | 1.34e-08 | 43 |
gray matter | 1.01e-07 | 34 |