FFCP PHASE1:Mm9::chr4:124799704..124799713,-: Difference between revisions
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|id=chr4:124799704..124799713,-
|short_description=p4@Zc3h12a
|description=CAGE_peak_4_at_Zc3h12a_5end
|association_with_transcript=50bp_to_ENSMUST00000131685,uc008...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=230738 | |EntrezGene=230738 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=815 | |||
|TSSclassifier=NA | |||
|UniProt=Q5D1E7 | |UniProt=Q5D1E7 | ||
|association_with_transcript=50bp_to_ENSMUST00000131685,uc008urw.2_5end | |||
|cluster_id=chr4:124799704..124799713,- | |||
|description=CAGE_peak_4_at_Zc3h12a_5end | |||
|id=chr4:124799704..124799713,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,2.66e-39,3;CL:0000359,2.66e-39,3;CL:0002539,2.66e-39,3;CL:0000514,2.66e-39,3;CL:0000680,2.48e-20,6;CL:0000187,2.48e-20,6;CL:0000056,2.48e-20,6;CL:0000222,1.31e-17,7;CL:0000355,5.71e-14,9;CL:0002293,5.71e-11,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!5.53e-11!5;UBERON:0001981!5.53e-11!5;UBERON:0002049!5.53e-11!5;UBERON:0007500!5.53e-11!5;UBERON:0007798!5.53e-11!5;UBERON:0004537!5.53e-11!5;UBERON:0006965!5.53e-11!5;UBERON:0000947!3.78e-08!4;UBERON:0001637!3.78e-08!4;UBERON:0003509!3.78e-08!4;UBERON:0004573!3.78e-08!4;UBERON:0004571!3.78e-08!4;UBERON:0010191!3.78e-08!4;UBERON:0004572!3.78e-08!4;UBERON:0000344!7.66e-07!15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001135,2.66e-39,3;UBERON:0004237,2.66e-39,3;UBERON:0004695,2.66e-39,3;UBERON:0002111,2.66e-39,3;UBERON:0004178,2.66e-39,3;UBERON:0000947,7.88e-30,4;UBERON:0001637,7.88e-30,4;UBERON:0004573,7.88e-30,4;UBERON:0003509,7.88e-30,4;UBERON:0004571,7.88e-30,4;UBERON:0010191,7.88e-30,4;UBERON:0004572,7.88e-30,4;UBERON:0000055,3.90e-24,5;UBERON:0007500,3.90e-24,5;UBERON:0001981,3.90e-24,5;UBERON:0002049,3.90e-24,5;UBERON:0007798,3.90e-24,5;UBERON:0004537,3.90e-24,5;UBERON:0006965,3.90e-24,5;UBERON:0001134,5.71e-14,9;UBERON:0002036,5.71e-14,9;UBERON:0002385,5.71e-14,9;UBERON:0000486,5.71e-14,9;UBERON:0007503,5.71e-14,9;UBERON:0001015,5.71e-14,9;UBERON:0002329,5.71e-14,9;UBERON:0003082,5.71e-14,9;UBERON:0003059,5.71e-14,9;UBERON:0007282,5.71e-14,9;UBERON:0004290,5.71e-14,9;UBERON:0009618,5.71e-14,9;UBERON:0000383,1.08e-12,10;UBERON:0007524,1.21e-11,11;UBERON:0003077,1.21e-11,11;UBERON:0007285,1.21e-11,11 | |||
|phase1_expression=0,0,0.454999239389536,0,0,0.33575854382378,0.233612640595526,0,0,0,0.171217968225505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22940928106717,0.57423196411502,0.430761996159075,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7697299954627,1.52065396829272,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0.988866362566974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0,2.56652954828636,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0.433798070759735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0,0,0.330418782983798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120625849856312,0,0.328281799490123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0.25347929989024,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0.169229215783353,0,0.263069711437843,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0.454999239389536,0,0,0.33575854382378,0.233612640595526,0,0,0,0.171217968225505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22940928106717,0.57423196411502,0.430761996159075,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7697299954627,1.52065396829272,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0.988866362566974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0,2.56652954828636,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0.433798070759735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0,0,0.330418782983798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120625849856312,0,0.328281799490123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0.25347929989024,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0.169229215783353,0,0.263069711437843,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@Zc3h12a | |||
}} | }} |
Latest revision as of 08:03, 26 September 2015
Short description: | p4@Zc3h12a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Zc3h12a_5end |
Coexpression cluster: | MCL_coexpression_mm9:815 |
Association with transcript: | 50bp_to_ENSMUST00000131685, uc008urw.2_5end |
EntrezGene: | Zc3h12a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 2.66e-39 | 3 |
vascular associated smooth muscle cell | 2.66e-39 | 3 |
aortic smooth muscle cell | 2.66e-39 | 3 |
smooth muscle myoblast | 2.66e-39 | 3 |
muscle precursor cell | 2.48e-20 | 6 |
muscle cell | 2.48e-20 | 6 |
myoblast | 2.48e-20 | 6 |
mesodermal cell | 1.31e-17 | 7 |
multi-potent skeletal muscle stem cell | 5.71e-14 | 9 |
epithelial cell of thymus | 5.71e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
smooth muscle tissue | 2.66e-39 | 3 |
blood vessel smooth muscle | 2.66e-39 | 3 |
arterial system smooth muscle | 2.66e-39 | 3 |
artery smooth muscle tissue | 2.66e-39 | 3 |
aorta smooth muscle tissue | 2.66e-39 | 3 |
aorta | 7.88e-30 | 4 |
artery | 7.88e-30 | 4 |
systemic artery | 7.88e-30 | 4 |
arterial blood vessel | 7.88e-30 | 4 |
systemic arterial system | 7.88e-30 | 4 |
aortic system | 7.88e-30 | 4 |
arterial system | 7.88e-30 | 4 |
vessel | 3.90e-24 | 5 |
epithelial tube open at both ends | 3.90e-24 | 5 |
blood vessel | 3.90e-24 | 5 |
vasculature | 3.90e-24 | 5 |
vascular system | 3.90e-24 | 5 |
blood vasculature | 3.90e-24 | 5 |
vascular cord | 3.90e-24 | 5 |
skeletal muscle tissue | 5.71e-14 | 9 |
striated muscle tissue | 5.71e-14 | 9 |
muscle tissue | 5.71e-14 | 9 |
multilaminar epithelium | 5.71e-14 | 9 |
epithelial vesicle | 5.71e-14 | 9 |
musculature | 5.71e-14 | 9 |
somite | 5.71e-14 | 9 |
myotome | 5.71e-14 | 9 |
presomitic mesoderm | 5.71e-14 | 9 |
presumptive segmental plate | 5.71e-14 | 9 |
dermomyotome | 5.71e-14 | 9 |
trunk paraxial mesoderm | 5.71e-14 | 9 |
musculature of body | 1.08e-12 | 10 |
dense mesenchyme tissue | 1.21e-11 | 11 |
paraxial mesoderm | 1.21e-11 | 11 |
presumptive paraxial mesoderm | 1.21e-11 | 11 |