FFCP PHASE1:Mm9::chr3:95985101..95985156,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:95985101..95985156,+
|short_description=p1@Sv2a
|description=CAGE_peak_1_at_Sv2a_5end
|association_with_transcript=0bp_to_NM_022030,uc008qmf.1_5end
|Entre...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=64051 | |EntrezGene=64051 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JIS5 | |UniProt=Q9JIS5 | ||
|association_with_transcript=0bp_to_NM_022030,uc008qmf.1_5end | |||
|cluster_id=chr3:95985101..95985156,+ | |||
|description=CAGE_peak_1_at_Sv2a_5end | |||
|id=chr3:95985101..95985156,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.00e-14!33;CL:0000047!2.00e-14!33;CL:0000031!2.00e-14!33;CL:0000404!2.00e-14!33;CL:0000117!2.71e-13!23;CL:0000337!2.71e-13!23;CL:0002319!2.94e-12!43;CL:0000221!3.07e-12!44;CL:0000133!3.07e-12!44;CL:0000393!2.69e-10!39;CL:0000211!2.69e-10!39;CL:0000055!2.03e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.27e-14,33;CL:0000047,1.27e-14,33;CL:0000031,1.27e-14,33;CL:0000404,1.27e-14,33;CL:0000117,1.79e-13,23;CL:0000337,1.79e-13,23;CL:0002319,2.65e-12,43;CL:0000221,2.76e-12,44;CL:0000133,2.76e-12,44;CL:0000393,4.34e-10,39;CL:0000211,4.34e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.46e-31!73;UBERON:0005743!4.46e-31!73;UBERON:0000073!1.23e-29!75;UBERON:0001016!1.23e-29!75;UBERON:0002346!4.47e-27!71;UBERON:0003075!4.47e-27!71;UBERON:0007284!4.47e-27!71;UBERON:0004121!7.19e-25!102;UBERON:0000924!7.19e-25!102;UBERON:0006601!7.19e-25!102;UBERON:0000033!3.77e-24!63;UBERON:0001049!4.79e-24!52;UBERON:0005068!4.79e-24!52;UBERON:0006241!4.79e-24!52;UBERON:0007135!4.79e-24!52;UBERON:0000955!1.91e-23!50;UBERON:0006238!1.91e-23!50;UBERON:0002616!9.38e-23!49;UBERON:0003056!3.81e-21!49;UBERON:0003080!1.17e-18!40;UBERON:0002780!5.50e-18!39;UBERON:0001890!5.50e-18!39;UBERON:0006240!5.50e-18!39;UBERON:0002020!1.01e-17!34;UBERON:0002791!5.37e-15!29;UBERON:0003528!5.37e-15!29;UBERON:0001893!5.37e-15!29;UBERON:0007811!9.55e-15!86;UBERON:0000153!1.11e-12!94;UBERON:0000956!1.57e-10!21;UBERON:0001869!1.57e-10!21;UBERON:0000203!1.57e-10!21;UBERON:0002619!9.20e-09!17;UBERON:0002021!1.43e-07!10;UBERON:0000411!1.43e-07!10;UBERON:0001950!1.43e-07!10;UBERON:0000025!3.59e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.55e-31,73;UBERON:0001016,6.44e-30,75;UBERON:0002346,2.57e-28,64;UBERON:0003075,2.57e-28,64;UBERON:0007284,2.57e-28,64;UBERON:0010314,6.42e-28,92;UBERON:0000073,4.25e-26,54;UBERON:0001049,2.15e-24,52;UBERON:0005068,2.15e-24,52;UBERON:0006241,2.15e-24,52;UBERON:0007135,2.15e-24,52;UBERON:0004121,4.66e-24,95;UBERON:0000924,4.66e-24,95;UBERON:0006601,4.66e-24,95;UBERON:0010371,1.55e-21,73;UBERON:0000955,1.74e-21,47;UBERON:0006238,1.74e-21,47;UBERON:0003056,1.90e-21,49;UBERON:0002616,8.45e-21,46;UBERON:0003080,6.39e-19,40;UBERON:0002780,3.07e-18,39;UBERON:0001890,3.07e-18,39;UBERON:0006240,3.07e-18,39;UBERON:0002020,5.68e-18,34;UBERON:0003528,3.33e-15,29;UBERON:0002791,3.33e-15,29;UBERON:0001893,3.33e-15,29;UBERON:0000956,1.14e-10,21;UBERON:0001869,1.14e-10,21;UBERON:0000203,1.14e-10,21;UBERON:0002619,7.12e-09,17;UBERON:0002021,1.15e-07,10;UBERON:0000411,1.15e-07,10;UBERON:0001950,1.15e-07,10;UBERON:0000025,2.94e-07,114 | |||
|phase1_expression=7.8472935081349,0,0.454999239389536,0,0,0.33575854382378,0.233612640595526,2.06597317506522,1.267098499365,3.27690336850791,1.02730780935303,2.71225340584144,2.22560948910567,5.33264454755884,0,1.61980213911861,0,1.41957974411207,1.23402990245165,0.42438965179803,56.2986580800082,8.14185799847259,11.4927907221132,0.799962113967033,0.91763712426868,0,0,0.646413698057667,0.190023419456374,0.504060259519861,0.443461021310609,5.08024538767705,1.84519436275371,0,0,0,0.204169356262369,0,0,0,0,0,0,1.1330713617802,1.62203089951223,2.20256102594018,3.12956537739216,4.36050312760893,3.29529274101708,3.30530828426282,2.09979632438044,7.18762821824858,0.671130424230945,3.62681071005672,1.68046899571232,0.771778308107841,0.85960031981627,0.515672092277442,103.990660881833,106.327186833679,115.357315438125,1.35537812827653,0,0.449949858640699,2.96659908770092,0,17.0772062995491,18.8266969607562,28.0998849355974,33.3464667679276,27.7628948983824,237.947270008368,193.922578955517,39.932000544075,29.4245596025986,51.4762520501612,461.385541387439,472.953900267535,436.088947914475,102.475645566361,92.7684706128434,76.5742654718437,396.16067558296,310.644960737487,319.653934349087,166.759779378096,163.44268955737,102.706094649741,0.757261933331841,2.26714680320357,0.869593466105033,0,0,1.07940638327563,0,0,11.5164424508037,0.681721290312231,0.519572009205738,1.41335829804136,6.4787973097273,8.98285341900225,17.8363667794652,0,0,0.253359865475099,0,12.6744106488157,0,7.71899123137089,5.55153045651635,7.00270600117925,6.22661842591358,5.72746034099966,5.40908052824242,3.51866455723091,0.494389935468748,2.89198713839823,0,1.29413479957927,0.441683036920787,2.90925151881133,3.72783522436244,195.284791606702,296.367090141039,0.766371165625774,1.31796636956512,0,0.508280908292259,309.916832928578,225.090296586764,84.314070267732,271.165939499951,238.071090774538,337.655572409285,282.462039000966,6.21220119486929,1.99051152976149,2.27450482590307,25.6739064181498,5.98554037628437,6.20735681970377,11.884100567153,13.7141384230501,23.6767017046621,24.725948014976,30.6404639310313,73.9891640313585,1.29340795759705,4.9167580843633,4.57472922826267,3.72632745126877,1.94633074457919,2.089512999133,1.23469281844766,9.15557627365069,0,0,0.284163499395593,23.6123380690472,20.1692411583743,14.4049649168812,16.5721314909647,17.3152523937715,13.5755059340893,18.3701816352822,16.6329508867764,11.4430035519826,13.3293478429919,9.35754545250843,7.78260571640215,7.74859933354261,7.90380415047782,7.51555945058082,196.200522010331,49.6000231668151,0.660837565967596,1.05780226665418,8.10495352033889,6.0381534683714,4.25262622362908,3.02525286935014,2.66853652613844,2.66315876557583,0.949058123089023,3.12928013975621,4.02136334080431,3.97912944082302,2.53453313254856,2.69645822596266,1.08069024937347,1.59313018603494,1.70701110857774,3.65595240351132,1.1270773567308,5.09128319613286,6.20647958936402,9.04752076585109,14.0385112415851,21.8463019009811,18.5258498852822,20.2371348831753,0,2.16898637430922,2.16214894624523,0.674586337154561,0.202860121388503,0.72353147925725,0.25462585178142,0.287696137450811,0.972811360650212,0,4.31304619582064,0.744281895337007,0,0,0.179397413521912,0,0.923765950833023,6.44270800019648,4.07412441105065,4.07388205860452,1.17345124144251,2.51259386162724,1.42826184531608,2.53673742215138,2.20689201748667,1.7717175171902,1.59454768657487,1.63863314715738,1.55416483679306,1.15719246865209,0,0.54390568381871,0.491764273019036,0.275936746304732,288.66996079805,301.820092974923,0.327869890753351,0.757412781613119,14.8288863125641,14.055794794679,20.4652227846159,5.9742199488138,10.6943363559549,7.64306633129848,8.90583543684768,15.7818163272108,15.0209355619679,306.540535866404,3.26462195979018,8.72521457969551,10.4247653986289,4.61916344323099,2.65490276679926,11.8962511715941,8.76738315197778,6.78978287121233,5.90603785761546,5.84126781093462,5.42699415653264,3.99887102425256,3.92147116223193,1.8962205476149,0,0,47.3211051997765,6.30213829109586,6.72665155670323,8.14480733120051,16.3153014950892,23.5446839234733,21.72047071948,45.0608124689607,0.23467170806371,0.21183207086382,2.20528398054962,0.8244312647074,1.77610869365496,0.784068024066026,0.835606408021955,0.984845398470368,2.91480836629851,240.496616707631,0.170870880797853,6.19160603889667,2.03713980106683,0.941842285023455,0.956859594047176,0.915112692826091,0.849892149969277,1.25956307091292,1.52019971184866,2.86401185404534,10.9135917785492,5.08298667817122,3.78018692876304,1.88179466413022,1.52853794622324,3.64133735239016,5.53778153359751,2.35580347785627,2.98114438571124,0.621339313086926,0,5.38259565758324,4.30192075188454,3.88902376688095,1.80823752868824,2.70329800785245,4.5769323071844,2.73429208172295,1.78260885523708,0.966336483304024,0.576060012515731,1.26404448251271,2.02725215290164,1.84879722896689,1.94881234466693,1.25318686967237,0.39736270956253,1.08175904567972,1.77227432609493,1.21159739937777,1.295515713135,1.91569751759997,1.94915761479505,1.15454209968395,1.5193997283604,0.906921534460845,3.32978930061097,0.897138566094757,4.86865387455827,3.09103350451505,1.31377732815827,1.28206136987086,0.857473516316263,1.50471631210609,293.670958160875,353.990106874019,322.54017406638,403.683125325322,308.287133896789,327.08555756974,276.75922509504,254.431479821685,213.43007463156,273.895204916713,3.21740777510948,10.3746467084268,10.2440163452481,13.8570828728928,10.4806581313991,15.8105417267012,8.66762238426299,9.68364769022803,11.8740107548972,9.34979683526051,9.37873409593887,8.11093267960128,9.64507526939789,10.5001249943986,11.2573519153002,14.7651044297753,12.7472758539341,13.6965546529231,5.76920261124629,8.97913412819824,10.9718160763333,10.6485483695602,10.0143199777875,9.88355633099834,9.41093804153306,9.22299226019274,10.7927503994936,11.8381370147029,10.7285249938231,10.1005608898393,12.2194068667899,10.0474572023075,13.0953933814301,9.14127362997199,11.3814900478873,29.2278376187397,10.9947855969342,11.8179079726564,10.7121465958552,8.6030653456611,6.95603506861264 | |phase1_expression=7.8472935081349,0,0.454999239389536,0,0,0.33575854382378,0.233612640595526,2.06597317506522,1.267098499365,3.27690336850791,1.02730780935303,2.71225340584144,2.22560948910567,5.33264454755884,0,1.61980213911861,0,1.41957974411207,1.23402990245165,0.42438965179803,56.2986580800082,8.14185799847259,11.4927907221132,0.799962113967033,0.91763712426868,0,0,0.646413698057667,0.190023419456374,0.504060259519861,0.443461021310609,5.08024538767705,1.84519436275371,0,0,0,0.204169356262369,0,0,0,0,0,0,1.1330713617802,1.62203089951223,2.20256102594018,3.12956537739216,4.36050312760893,3.29529274101708,3.30530828426282,2.09979632438044,7.18762821824858,0.671130424230945,3.62681071005672,1.68046899571232,0.771778308107841,0.85960031981627,0.515672092277442,103.990660881833,106.327186833679,115.357315438125,1.35537812827653,0,0.449949858640699,2.96659908770092,0,17.0772062995491,18.8266969607562,28.0998849355974,33.3464667679276,27.7628948983824,237.947270008368,193.922578955517,39.932000544075,29.4245596025986,51.4762520501612,461.385541387439,472.953900267535,436.088947914475,102.475645566361,92.7684706128434,76.5742654718437,396.16067558296,310.644960737487,319.653934349087,166.759779378096,163.44268955737,102.706094649741,0.757261933331841,2.26714680320357,0.869593466105033,0,0,1.07940638327563,0,0,11.5164424508037,0.681721290312231,0.519572009205738,1.41335829804136,6.4787973097273,8.98285341900225,17.8363667794652,0,0,0.253359865475099,0,12.6744106488157,0,7.71899123137089,5.55153045651635,7.00270600117925,6.22661842591358,5.72746034099966,5.40908052824242,3.51866455723091,0.494389935468748,2.89198713839823,0,1.29413479957927,0.441683036920787,2.90925151881133,3.72783522436244,195.284791606702,296.367090141039,0.766371165625774,1.31796636956512,0,0.508280908292259,309.916832928578,225.090296586764,84.314070267732,271.165939499951,238.071090774538,337.655572409285,282.462039000966,6.21220119486929,1.99051152976149,2.27450482590307,25.6739064181498,5.98554037628437,6.20735681970377,11.884100567153,13.7141384230501,23.6767017046621,24.725948014976,30.6404639310313,73.9891640313585,1.29340795759705,4.9167580843633,4.57472922826267,3.72632745126877,1.94633074457919,2.089512999133,1.23469281844766,9.15557627365069,0,0,0.284163499395593,23.6123380690472,20.1692411583743,14.4049649168812,16.5721314909647,17.3152523937715,13.5755059340893,18.3701816352822,16.6329508867764,11.4430035519826,13.3293478429919,9.35754545250843,7.78260571640215,7.74859933354261,7.90380415047782,7.51555945058082,196.200522010331,49.6000231668151,0.660837565967596,1.05780226665418,8.10495352033889,6.0381534683714,4.25262622362908,3.02525286935014,2.66853652613844,2.66315876557583,0.949058123089023,3.12928013975621,4.02136334080431,3.97912944082302,2.53453313254856,2.69645822596266,1.08069024937347,1.59313018603494,1.70701110857774,3.65595240351132,1.1270773567308,5.09128319613286,6.20647958936402,9.04752076585109,14.0385112415851,21.8463019009811,18.5258498852822,20.2371348831753,0,2.16898637430922,2.16214894624523,0.674586337154561,0.202860121388503,0.72353147925725,0.25462585178142,0.287696137450811,0.972811360650212,0,4.31304619582064,0.744281895337007,0,0,0.179397413521912,0,0.923765950833023,6.44270800019648,4.07412441105065,4.07388205860452,1.17345124144251,2.51259386162724,1.42826184531608,2.53673742215138,2.20689201748667,1.7717175171902,1.59454768657487,1.63863314715738,1.55416483679306,1.15719246865209,0,0.54390568381871,0.491764273019036,0.275936746304732,288.66996079805,301.820092974923,0.327869890753351,0.757412781613119,14.8288863125641,14.055794794679,20.4652227846159,5.9742199488138,10.6943363559549,7.64306633129848,8.90583543684768,15.7818163272108,15.0209355619679,306.540535866404,3.26462195979018,8.72521457969551,10.4247653986289,4.61916344323099,2.65490276679926,11.8962511715941,8.76738315197778,6.78978287121233,5.90603785761546,5.84126781093462,5.42699415653264,3.99887102425256,3.92147116223193,1.8962205476149,0,0,47.3211051997765,6.30213829109586,6.72665155670323,8.14480733120051,16.3153014950892,23.5446839234733,21.72047071948,45.0608124689607,0.23467170806371,0.21183207086382,2.20528398054962,0.8244312647074,1.77610869365496,0.784068024066026,0.835606408021955,0.984845398470368,2.91480836629851,240.496616707631,0.170870880797853,6.19160603889667,2.03713980106683,0.941842285023455,0.956859594047176,0.915112692826091,0.849892149969277,1.25956307091292,1.52019971184866,2.86401185404534,10.9135917785492,5.08298667817122,3.78018692876304,1.88179466413022,1.52853794622324,3.64133735239016,5.53778153359751,2.35580347785627,2.98114438571124,0.621339313086926,0,5.38259565758324,4.30192075188454,3.88902376688095,1.80823752868824,2.70329800785245,4.5769323071844,2.73429208172295,1.78260885523708,0.966336483304024,0.576060012515731,1.26404448251271,2.02725215290164,1.84879722896689,1.94881234466693,1.25318686967237,0.39736270956253,1.08175904567972,1.77227432609493,1.21159739937777,1.295515713135,1.91569751759997,1.94915761479505,1.15454209968395,1.5193997283604,0.906921534460845,3.32978930061097,0.897138566094757,4.86865387455827,3.09103350451505,1.31377732815827,1.28206136987086,0.857473516316263,1.50471631210609,293.670958160875,353.990106874019,322.54017406638,403.683125325322,308.287133896789,327.08555756974,276.75922509504,254.431479821685,213.43007463156,273.895204916713,3.21740777510948,10.3746467084268,10.2440163452481,13.8570828728928,10.4806581313991,15.8105417267012,8.66762238426299,9.68364769022803,11.8740107548972,9.34979683526051,9.37873409593887,8.11093267960128,9.64507526939789,10.5001249943986,11.2573519153002,14.7651044297753,12.7472758539341,13.6965546529231,5.76920261124629,8.97913412819824,10.9718160763333,10.6485483695602,10.0143199777875,9.88355633099834,9.41093804153306,9.22299226019274,10.7927503994936,11.8381370147029,10.7285249938231,10.1005608898393,12.2194068667899,10.0474572023075,13.0953933814301,9.14127362997199,11.3814900478873,29.2278376187397,10.9947855969342,11.8179079726564,10.7121465958552,8.6030653456611,6.95603506861264 | ||
|short_description=p1@Sv2a | |||
}} | }} |
Latest revision as of 00:16, 26 September 2015
Short description: | p1@Sv2a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sv2a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_NM_022030, uc008qmf.1_5end |
EntrezGene: | Sv2a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.27e-14 | 33 |
neuronal stem cell | 1.27e-14 | 33 |
neuroblast | 1.27e-14 | 33 |
electrically signaling cell | 1.27e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.79e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.79e-13 | 23 |
neural cell | 2.65e-12 | 43 |
ectodermal cell | 2.76e-12 | 44 |
neurectodermal cell | 2.76e-12 | 44 |
electrically responsive cell | 4.34e-10 | 39 |
electrically active cell | 4.34e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.55e-31 | 73 |
nervous system | 6.44e-30 | 75 |
neurectoderm | 2.57e-28 | 64 |
neural plate | 2.57e-28 | 64 |
presumptive neural plate | 2.57e-28 | 64 |
structure with developmental contribution from neural crest | 6.42e-28 | 92 |
regional part of nervous system | 4.25e-26 | 54 |
neural tube | 2.15e-24 | 52 |
neural rod | 2.15e-24 | 52 |
future spinal cord | 2.15e-24 | 52 |
neural keel | 2.15e-24 | 52 |
ectoderm-derived structure | 4.66e-24 | 95 |
ectoderm | 4.66e-24 | 95 |
presumptive ectoderm | 4.66e-24 | 95 |
ecto-epithelium | 1.55e-21 | 73 |
brain | 1.74e-21 | 47 |
future brain | 1.74e-21 | 47 |
pre-chordal neural plate | 1.90e-21 | 49 |
regional part of brain | 8.45e-21 | 46 |
anterior neural tube | 6.39e-19 | 40 |
regional part of forebrain | 3.07e-18 | 39 |
forebrain | 3.07e-18 | 39 |
future forebrain | 3.07e-18 | 39 |
gray matter | 5.68e-18 | 34 |
brain grey matter | 3.33e-15 | 29 |
regional part of telencephalon | 3.33e-15 | 29 |
telencephalon | 3.33e-15 | 29 |
cerebral cortex | 1.14e-10 | 21 |
cerebral hemisphere | 1.14e-10 | 21 |
pallium | 1.14e-10 | 21 |
regional part of cerebral cortex | 7.12e-09 | 17 |
occipital lobe | 1.15e-07 | 10 |
visual cortex | 1.15e-07 | 10 |
neocortex | 1.15e-07 | 10 |
tube | 2.94e-07 | 114 |