FFCP PHASE2:Hg19::chr4:110223865..110223887,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:84570 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:18603 |TSScla...") |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=84570 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=18603 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=D6R8Y2 | ||
|association_with_transcript=-52bp_to_ENST00000505591_5end | |association_with_transcript=-52bp_to_ENST00000505591_5end | ||
|cluster_id=chr4:110223865..110223887,- | |cluster_id=chr4:110223865..110223887,- |
Latest revision as of 15:57, 24 September 2015
Short description: | p2@COL25A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_COL25A1_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | -52bp_to_ENST00000505591_5end |
EntrezGene: | COL25A1 |
HGNC: | 18603 |
UniProt: | D6R8Y2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p2@COL25A1 |
---|
0
5
10
15
20
25
30
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 2.50e-16 | 41 |
forebrain | 2.50e-16 | 41 |
anterior neural tube | 2.50e-16 | 41 |
future forebrain | 2.50e-16 | 41 |
regional part of telencephalon | 5.77e-15 | 32 |
cerebral hemisphere | 5.77e-15 | 32 |
pre-chordal neural plate | 6.07e-14 | 61 |
brain grey matter | 6.78e-14 | 34 |
gray matter | 6.78e-14 | 34 |
telencephalon | 6.78e-14 | 34 |
Showing 1 to 10 of 42 entries