FFCP PHASE1:Hg19::chr13:67804445..67804475,-: Difference between revisions
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=5101 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=8661 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q5VT82,Q9HC56 | ||
|association_with_transcript=0bp_to_ENST00000377861,ENST00000456367,ENST00000544246,NM_020403,NM_203487,uc001vik.2,uc001vil.2,uc001vin.3,uc010thl.1_5end | |association_with_transcript=0bp_to_ENST00000377861,ENST00000456367,ENST00000544246,NM_020403,NM_203487,uc001vik.2,uc001vil.2,uc001vin.3,uc010thl.1_5end | ||
|cluster_id=chr13:67804445..67804475,- | |cluster_id=chr13:67804445..67804475,- | ||
Latest revision as of 21:21, 17 September 2015
| Short description: | p1@PCDH9 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_PCDH9_5end |
| Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
| Association with transcript: | 0bp_to_ENST00000377861, ENST00000456367, ENST00000544246, NM_020403, NM_203487, uc001vik.2, uc001vil.2, uc001vin.3, uc010thl.1_5end |
| EntrezGene: | PCDH9 |
| HGNC: | 8661 |
| UniProt: | Q5VT82Q9HC56 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@PCDH9 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neural tube | 4.26e-44 | 56 |
| neural rod | 4.26e-44 | 56 |
| future spinal cord | 4.26e-44 | 56 |
| neural keel | 4.26e-44 | 56 |
| regional part of nervous system | 6.59e-41 | 53 |
| regional part of brain | 6.59e-41 | 53 |
| neural plate | 5.32e-40 | 82 |
| presumptive neural plate | 5.32e-40 | 82 |
| central nervous system | 1.36e-39 | 81 |
| neurectoderm | 3.99e-38 | 86 |
Showing 1 to 10 of 54 entries
