Template:TimeCourse: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (49 intermediate revisions by 2 users not shown) | |||
| Line 2: | Line 2: | ||
{{#set:id={{{id}}}}} | {{#set:id={{{id}}}}} | ||
<table> | <table> | ||
<tr><th scope="row" align="right">Series:</th><td>{{{series}}}</td></tr> | <tr><th scope="row" align="right">Series:</th><td>{{{series}}}</td></tr> | ||
<tr><th scope="row" align="right"> | <tr><th scope="row" align="right">Species:</th><td>{{{species}}}</td></tr> | ||
<tr><th scope="row" align="right">Genomic View:</th><td>[{{{zenbu_config}}} Zenbu] </td></tr> | <tr><th scope="row" align="right">Genomic View:</th><td><span class="plainlinks">[{{{zenbu_config}}} Zenbu]</span></td></tr> | ||
<tr><th scope="row" align="right"> | <tr><th scope="row" align="right">Expression table:</th><td><span class="plainlinks">[{{{tet_config}}} FILE]</span></td></tr> | ||
<tr><th scope="row" align="right">Link to TET:</th><td><span class="plainlinks">[{{{tet_file}}} TET]</span></td></tr> | |||
<tr><th scope="row" align="right">Sample providers :</th><td>{{{collaborators}}}</td></tr> | |||
<tr><th scope="row" align="right">Germ layer:</th><td>{{{germ_layer}}}</td></tr> | |||
<tr><th scope="row" align="right">Primary cells or cell line:</th><td>{{{primary_cells}}}</td></tr> | |||
<tr><th scope="row" align="right">Time span:</th><td>{{{time_span}}}</td></tr> | |||
<tr><th scope="row" align="right">Number of time points:</th><td>{{{number_time_points}}}</td></tr> | |||
</table><br> | </table><br> | ||
<!--Timecourse Overview table start --> | <!--Timecourse Overview table start --> | ||
{|class="wikitable mw-collapsible | {|class="wikitable mw-collapsible" style="width:auto" | ||
! Overview | ! Overview | ||
|- | |- | ||
| Line 30: | Line 35: | ||
|}<!-- Quality control table end --> | |}<!-- Quality control table end --> | ||
{{Fontsize|3|Profiled time course samples}} | <p>{{Fontsize|3|Profiled time course samples}}</p> | ||
<p>{{Fontsize|1|Only samples that passed quality controls (Arner et al. 2015) are shown here. The entire set of samples are downloadable from FANTOM5 [[Browse_samples|human ]] / [[Browse_samples_mm9|mouse samples]]}}</p> | |||
---- | ---- | ||
<br> | <br> | ||
<html> | <html> | ||
<style type="text/css" title="currentStyle"> | <style type="text/css" title="currentStyle"> | ||
@import "/ | @import "/5/sstar/rb_js/html5button/datatables.css"; | ||
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; | @import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; | ||
| Line 54: | Line 60: | ||
} | } | ||
</style> | </style> | ||
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script> | |||
<script type="text/javascript" src="/resource_browser/rb_js/custom/convert.js"></script> | <script type="text/javascript" src="/resource_browser/rb_js/custom/convert.js"></script> | ||
<script type="text/javascript" src="/ | <script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script> | ||
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | <script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | ||
<script type="text/javascript"> | <script type="text/javascript"> | ||
$(document).ready(function() { | $(document).ready(function() { | ||
var oTable = $('.cl_list'). | var oTable = $('.cl_list').DataTable({ | ||
dom: 'Blfrtip', | |||
lengthMenu: [[-1], ["All"]], | |||
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'], | |||
columns: [{title: "Sample"},{title: "Name"},{title: "Time point"},{title: "Donor/Replica"}] | |||
}); | |||
} ); | } ); | ||
</script> | </script> | ||
| Line 77: | Line 79: | ||
{{#ask:[[Category:FF Samples]][[timecourse::{{PAGENAME}}]] | {{#ask:[[Category:FF Samples]][[timecourse::{{PAGENAME}}]] | ||
|?name=Name | |?name=Name | ||
|format= | |?Time=Time point | ||
|class=cl_list | |?Donor=Donor/Replica | ||
|format=table | |||
|class=cl_list stripe cell-border order-column compact | |||
|limit=2000 | |limit=2000 | ||
|searchlabel= | |searchlabel= | ||
|mainlabel=Sample | |mainlabel=Sample | ||
|headers=hide | |||
}} | }} | ||
{{#arraymap:{{{samples}}}|,|$|{{#set:sample=[[FF:$]]}}}} | {{#arraymap:{{{samples|}}}|,|$|{{#set:sample=[[FF:$]]}}}} | ||
{{#set:species={{{species}}}}} | {{#set:species={{{species}}}}} | ||
{{#set:description={{{description}}}}} | {{#set:description={{{description}}}}} | ||
{{#set:series={{{series}}}}} | {{#set:series={{{series}}}}} | ||
{{#set:status={{{status}}}}} | {{#set:status={{{status|}}}}} | ||
{{#set:collaborators={{{collaborators}}}}} | {{#set:collaborators={{{collaborators}}}}} | ||
{{#set:tissue_cell_type={{{tissue_cell_type}}}}} | |||
{{#set:category_treatment={{{category_treatment}}}}} | |||
{{#set:timepoint_design={{{timepoint_design}}}}} | |||
[[Category:Time Courses]] | [[Category:Time Courses]] | ||
Latest revision as of 10:57, 15 March 2022
| Series: | {{{series}}} |
|---|---|
| Species: | {{{species}}} |
| Genomic View: | [{{{zenbu_config}}} Zenbu] |
| Expression table: | [{{{tet_config}}} FILE] |
| Link to TET: | [{{{tet_file}}} TET] |
| Sample providers : | {{{collaborators}}} |
| Germ layer: | {{{germ_layer}}} |
| Primary cells or cell line: | {{{primary_cells}}} |
| Time span: | {{{time_span}}} |
| Number of time points: | {{{number_time_points}}} |
| Overview |
|---|
|
{{{TCOverview}}} |
| Sample description |
|---|
|
{{{TCSample_description}}} |
| Quality control |
|---|
|
{{{TCQuality_control}}} |
Profiled time course samples
Only samples that passed quality controls (Arner et al. 2015) are shown here. The entire set of samples are downloadable from FANTOM5 human / mouse samples
Property "Series" (as page type) with input value "{{{series}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "Collaborators" (as page type) with input value "{{{collaborators}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
