FF:12858-137D5: Difference between revisions

Latest revision as of 18:46, 4 June 2020

Name:	Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification
Species:	Human (Homo sapiens)
Library ID:	CNhs12952
Sample type:	time courses
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	NA
cell type	osteoblast
cell line	Saos-2
company	NA
collaboration	Kim Summers (Roslin Institute)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005731

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12952		CAGE		DRX008602		DRR009474

Accession ID Hg19

Library id		BAM		CTSS
CNhs12952		DRZ000899		DRZ002284

Accession ID Hg38

Library id		BAM		CTSS
CNhs12952		DRZ012249		DRZ013634

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005731

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10065.GTTTCG		sRNA-Seq		DRX037314		DRR041680

Accession ID Hg19

Library id		BAM		CTSS
SRhi10065.GTTTCG		DRZ007322

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.048
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.631
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0344
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0344
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.018
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.115
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0176
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.044
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0839
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0.0961
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.134
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.362
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0663
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0228
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.569
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0344
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0663
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0.74
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12952

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.88
MA0003.1	MA0003.1	0.227
MA0004.1	MA0004.1	0.53
MA0006.1	MA0006.1	0.383
MA0007.1	MA0007.1	0.453
MA0009.1	MA0009.1	0.813
MA0014.1	MA0014.1	0.725
MA0017.1	MA0017.1	0.00253
MA0018.2	MA0018.2	0.0101
MA0019.1	MA0019.1	0.718
MA0024.1	MA0024.1	1.50387e-7
MA0025.1	MA0025.1	0.685
MA0027.1	MA0027.1	0.497
MA0028.1	MA0028.1	0.229
MA0029.1	MA0029.1	0.763
MA0030.1	MA0030.1	0.829
MA0031.1	MA0031.1	0.692
MA0035.2	MA0035.2	0.148
MA0038.1	MA0038.1	5.39959e-4
MA0039.2	MA0039.2	0.925
MA0040.1	MA0040.1	0.146
MA0041.1	MA0041.1	0.196
MA0042.1	MA0042.1	0.484
MA0043.1	MA0043.1	0.377
MA0046.1	MA0046.1	0.74
MA0047.2	MA0047.2	0.29
MA0048.1	MA0048.1	0.216
MA0050.1	MA0050.1	0.0466
MA0051.1	MA0051.1	0.423
MA0052.1	MA0052.1	2.65962e-4
MA0055.1	MA0055.1	0.124
MA0057.1	MA0057.1	0.409
MA0058.1	MA0058.1	0.415
MA0059.1	MA0059.1	0.925
MA0060.1	MA0060.1	6.05018e-13
MA0061.1	MA0061.1	0.0188
MA0062.2	MA0062.2	0.284
MA0065.2	MA0065.2	0.00322
MA0066.1	MA0066.1	0.25
MA0067.1	MA0067.1	0.356
MA0068.1	MA0068.1	0.421
MA0069.1	MA0069.1	0.697
MA0070.1	MA0070.1	0.0276
MA0071.1	MA0071.1	0.48
MA0072.1	MA0072.1	0.318
MA0073.1	MA0073.1	0.398
MA0074.1	MA0074.1	0.204
MA0076.1	MA0076.1	0.128
MA0077.1	MA0077.1	0.27
MA0078.1	MA0078.1	0.835
MA0079.2	MA0079.2	0.817
MA0080.2	MA0080.2	2.87398e-9
MA0081.1	MA0081.1	0.0634
MA0083.1	MA0083.1	0.179
MA0084.1	MA0084.1	0.197
MA0087.1	MA0087.1	0.377
MA0088.1	MA0088.1	0.354
MA0090.1	MA0090.1	0.639
MA0091.1	MA0091.1	0.0515
MA0092.1	MA0092.1	0.195
MA0093.1	MA0093.1	0.391
MA0099.2	MA0099.2	2.80924e-4
MA0100.1	MA0100.1	0.239
MA0101.1	MA0101.1	0.0402
MA0102.2	MA0102.2	0.0356
MA0103.1	MA0103.1	0.0239
MA0104.2	MA0104.2	0.352
MA0105.1	MA0105.1	0.00653
MA0106.1	MA0106.1	0.187
MA0107.1	MA0107.1	0.0102
MA0108.2	MA0108.2	0.0632
MA0111.1	MA0111.1	0.841
MA0112.2	MA0112.2	0.00107
MA0113.1	MA0113.1	0.621
MA0114.1	MA0114.1	0.0996
MA0115.1	MA0115.1	0.202
MA0116.1	MA0116.1	0.0176
MA0117.1	MA0117.1	0.461
MA0119.1	MA0119.1	0.145
MA0122.1	MA0122.1	0.632
MA0124.1	MA0124.1	0.624
MA0125.1	MA0125.1	0.0181
MA0131.1	MA0131.1	0.252
MA0135.1	MA0135.1	0.0903
MA0136.1	MA0136.1	1.22422e-7
MA0137.2	MA0137.2	0.144
MA0138.2	MA0138.2	0.0303
MA0139.1	MA0139.1	0.25
MA0140.1	MA0140.1	0.319
MA0141.1	MA0141.1	0.139
MA0142.1	MA0142.1	0.118
MA0143.1	MA0143.1	0.965
MA0144.1	MA0144.1	0.0545
MA0145.1	MA0145.1	0.0971
MA0146.1	MA0146.1	0.0955
MA0147.1	MA0147.1	0.409
MA0148.1	MA0148.1	0.0891
MA0149.1	MA0149.1	0.553
MA0150.1	MA0150.1	0.252
MA0152.1	MA0152.1	0.11
MA0153.1	MA0153.1	0.296
MA0154.1	MA0154.1	0.023
MA0155.1	MA0155.1	0.2
MA0156.1	MA0156.1	0.0212
MA0157.1	MA0157.1	0.15
MA0159.1	MA0159.1	0.0135
MA0160.1	MA0160.1	0.2
MA0162.1	MA0162.1	0.147
MA0163.1	MA0163.1	5.20067e-4
MA0164.1	MA0164.1	0.979
MA0258.1	MA0258.1	0.0481
MA0259.1	MA0259.1	0.29

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12952

Novel motif	Logo	P-value
1	1	0.398
10	10	0.888
100	100	0.403
101	101	0.858
102	102	0.539
103	103	0.0209
104	104	0.699
105	105	0.666
106	106	1.99431e-4
107	107	0.0311
108	108	0.607
109	109	0.171
11	11	0.112
110	110	0.407
111	111	0.353
112	112	0.023
113	113	0.462
114	114	0.027
115	115	0.135
116	116	0.814
117	117	0.674
118	118	0.427
119	119	0.0757
12	12	0.728
120	120	0.21
121	121	0.388
122	122	0.621
123	123	0.975
124	124	0.413
125	125	0.117
126	126	0.254
127	127	0.644
128	128	0.00678
129	129	0.198
13	13	0.607
130	130	0.0516
131	131	0.268
132	132	0.311
133	133	0.692
134	134	0.922
135	135	0.108
136	136	0.556
137	137	0.23
138	138	0.663
139	139	0.00354
14	14	0.463
140	140	0.235
141	141	0.452
142	142	0.871
143	143	0.0189
144	144	0.514
145	145	0.128
146	146	0.754
147	147	0.838
148	148	0.0655
149	149	0.0935
15	15	0.519
150	150	0.545
151	151	0.207
152	152	0.0203
153	153	0.181
154	154	0.614
155	155	0.601
156	156	0.518
157	157	0.463
158	158	0.759
159	159	0.572
16	16	0.195
160	160	0.339
161	161	0.941
162	162	0.835
163	163	0.865
164	164	0.664
165	165	0.683
166	166	0.696
167	167	0.0908
168	168	0.151
169	169	0.0335
17	17	0.12
18	18	0.0704
19	19	0.141
2	2	0.232
20	20	0.287
21	21	0.793
22	22	0.189
23	23	0.0131
24	24	0.77
25	25	0.935
26	26	0.527
27	27	0.0227
28	28	0.903
29	29	0.547
3	3	0.104
30	30	0.426
31	31	0.491
32	32	0.0689
33	33	0.627
34	34	0.334
35	35	0.238
36	36	0.689
37	37	0.136
38	38	0.32
39	39	0.105
4	4	0.432
40	40	0.489
41	41	0.144
42	42	0.326
43	43	0.158
44	44	0.0168
45	45	0.13
46	46	0.137
47	47	0.355
48	48	0.527
49	49	0.253
5	5	0.388
50	50	0.411
51	51	0.517
52	52	0.148
53	53	0.843
54	54	0.301
55	55	0.078
56	56	0.456
57	57	0.839
58	58	0.185
59	59	0.0785
6	6	0.492
60	60	0.0322
61	61	0.987
62	62	0.0876
63	63	0.161
64	64	0.495
65	65	0.0233
66	66	0.145
67	67	0.653
68	68	0.602
69	69	0.686
7	7	0.774
70	70	0.00708
71	71	0.29
72	72	0.0684
73	73	0.0511
74	74	0.299
75	75	0.544
76	76	0.698
77	77	0.107
78	78	0.666
79	79	0.00291
8	8	0.311
80	80	0.197
81	81	0.431
82	82	0.0257
83	83	0.775
84	84	0.842
85	85	0.00148
86	86	0.364
87	87	0.699
88	88	0.376
89	89	0.00809
9	9	0.174
90	90	0.363
91	91	0.402
92	92	0.127
93	93	0.828
94	94	0.0333
95	95	0.343
96	96	0.414
97	97	0.973
98	98	0.237
99	99	0.524

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12952

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000593 human Saos2 osteosarcoma cell line 0min after induction of calcification with ascorbate and BPG sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0002204 (musculoskeletal system)
0001434 (skeletal system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000332 (calcification induced with ascorbate and BPG sample)
0100971 (SAOS-2 cell sample)
0100385 (bone cancer cell line sample)
0100407 (osteosarcoma cell line sample)
0000593 (human Saos2 osteosarcoma cell line 0min after induction of calcification with ascorbate and BPG sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005731
-|accession_numbers=CAGE;DRX008602;DRR009474;DRZ000899;DRZ002284
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005731
+|accession_numbers=CAGE;DRX008602;DRR009474;DRZ000899;DRZ002284;DRZ012249;DRZ013634
+|accession_numbers_RNASeq=sRNA-Seq;DRX037314;DRR041680;DRZ007322
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0002204,UBERON:0001434
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
+|donor= biol_rep3 (A3 T0)
 |expression_enrichment_score=chr6:45296048..45296082,+!p1@RUNX2!2.31!229.87!RUNX2;;chr12:53730126..53730146,-!p1@SP7!2.15!138.70!SP7;;chr12:53730147..53730177,-!p2@SP7!2.12!131.27!SP7;;chr7:96654133..96654150,-!p1@DLX5!2.00!99.09!DLX5;;chr2:200322654..200322707,-!p2@SATB2!1.88!107.67!SATB2;;chr5:88178983..88179012,-!p1@MEF2C!1.76!413.54!MEF2C;;chr17:48072574..48072597,-!p1@DLX3!1.74!54.29!DLX3;;chr6:45296191..45296203,+!p13@RUNX2!1.65!43.32!RUNX2;;chr1:25291475..25291511,-!p2@RUNX3!1.56!35.64!RUNX3;;chr2:172967621..172967637,-!p1@DLX2!1.51!81.44!DLX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.50!32.34!GLIS1;;chrX:82763292..82763317,+!p1@POU3F4!1.49!30.12!POU3F4;;chr11:46299199..46299233,+!p1@CREB3L1!1.43!130.94!CREB3L1;;chr9:132427883..132427951,+!p2@PRRX2!1.41!25.00!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.37!22.28!ZBED1;;chr1:151032860..151032918,+!p1@MLLT11!1.32!227.73!MLLT11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.32!19.72!HOXC5;;chr12:53730178..53730189,-!p3@SP7!1.31!19.31!SP7;;chr1:151032922..151032951,+!p2@MLLT11!1.26!28.05!MLLT11;;chr3:157824001..157824078,-!p2@SHOX2!1.25!16.67!SHOX2;;chr9:132427972..132428056,+!p1@PRRX2!1.24!21.45!PRRX2;;chrX:57619083..57619113,+!p1@ZXDB!1.24!16.25!ZXDB;;chr8:77593474..77593612,+!p1@ZFHX4!1.17!58.25!ZFHX4;;chr1:180199393..180199426,+!p1@LHX4!1.17!13.70!LHX4;;chr8:116681409..116681431,-!p2@TRPS1!1.15!36.22!TRPS1;;chr2:121493425..121493474,+!p1@GLI2!1.15!29.13!GLI2;;chr2:200323414..200323455,-!p1@SATB2!1.12!26.24!SATB2;;chr7:27205136..27205164,-!p1@HOXA9!1.10!11.63!HOXA9;;chr11:63684602..63684664,-!p1@RCOR2!1.09!22.61!RCOR2;;chr3:157823517..157823562,-!p1@SHOX2!1.08!11.80!SHOX2;;chr5:88179017..88179046,-!p2@MEF2C!1.07!43.65!MEF2C;;chr12:53729546..53729565,-!p4@SP7!1.07!10.81!SP7;;chr8:77593448..77593471,+!p2@ZFHX4!1.06!10.40!ZFHX4;;chr6:85474299..85474324,-!p1@TBX18!1.04!17.82!TBX18;;chr5:134369905..134369972,-!p1@PITX1!1.03!14.93!PITX1;;chr7:96635178..96635181,+!p1@DLX6!1.03!9.82!DLX6;;chr9:126774018..126774055,+!p1@LHX2!1.03!9.82!LHX2;;chrX:57936237..57936264,-!p1@ZXDA!1.03!9.74!ZXDA;;chr2:200322229..200322251,-!p3@SATB2!1.02!9.49!SATB2;;chr7:27224842..27224872,-!p1@HOXA11!1.02!9.41!HOXA11;;chr5:133450365..133450444,+!p1@TCF7!1.01!42.57!TCF7;;chr2:145277640..145277771,-!p1@ZEB2!1.00!123.52!ZEB2;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.91!HOXB6;;chr2:121493492..121493537,+!p2@GLI2!0.99!14.77!GLI2;;chr18:76739816..76739822,+!p1@SALL3!0.99!8.66!SALL3;;chr5:321810..321877,+!p1@AHRR!0.98!27.64!AHRR;;chr7:35293685..35293718,-!p1@TBX20!0.98!8.58!TBX20;;chr7:27205106..27205134,-!p2@HOXA9!0.97!8.33!HOXA9;;chr17:48046881..48046905,+!p5@DLX4!0.97!8.33!DLX4;;chr17:48046642..48046667,+!p3@DLX4!0.97!8.25!DLX4;;chr7:96654026..96654061,-!p2@DLX5!0.95!7.84!DLX5;;chr6:45296266..45296277,+!p34@RUNX2!0.93!7.59!RUNX2;;chr7:27196267..27196311,-!p1@HOXA7!0.93!7.51!HOXA7;;chr11:44331576..44331650,-!p1@ALX4!0.93!7.43!ALX4;;chr5:3595977..3595999,+!p1@IRX1!0.92!7.34!IRX1;;chr5:88185134..88185147,-!p15@MEF2C!0.92!7.34!MEF2C;;chr5:3595934..3595957,+!p2@IRX1!0.91!7.10!IRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.90!33.17!FOXD1;;chr17:46622440..46622477,-!p5@HOXB2!0.90!7.92!HOXB2;;chr7:96634878..96634900,+!p2@DLX6!0.90!6.93!DLX6;;chr7:27192185..27192209,-!p1@HOXA3!0.89!6.68!HOXA3;;chr2:172950227..172950249,+!p2@DLX1!0.89!6.68!DLX1;;chr6:20402102..20402152,+!p1@E2F3!0.88!28.22!E2F3;;chr8:145669791..145669834,-!p1@TONSL!0.88!19.55!TONSL;;chr3:114343826..114343869,-!p4@ZBTB20!0.88!13.78!ZBTB20;;chr1:23857325..23857416,-!p2@E2F2!0.88!7.76!E2F2;;chrX:82763265..82763283,+!p2@POU3F4!0.88!6.60!POU3F4;;chr12:53729525..53729541,-!p5@SP7!0.88!6.52!SP7;;chr1:23857698..23857733,-!p1@E2F2!0.87!12.29!E2F2;;chr20:22565185..22565223,-!p3@FOXA2!0.87!6.35!FOXA2;;chr9:124976328..124976372,-!p2@LHX6!0.87!6.35!LHX6;;chr17:48046543..48046575,+!p2@DLX4!0.87!6.35!DLX4;;chr6:31126291..31126399,+!p1@TCF19!0.86!63.37!TCF19;;chr2:200322723..200322739,-!p6@SATB2!0.86!6.27!SATB2;;chr2:42721205..42721307,+!p4@MTA3!0.86!6.19!MTA3;;chr9:114287433..114287513,+!p1@ZNF483!0.84!16.09!ZNF483;;chr6:85473156..85473210,-!p2@TBX18!0.84!7.26!TBX18;;chr19:58095501..58095535,+!p1@ZIK1!0.83!21.53!ZIK1;;chrX:84499081..84499115,+!p2@ZNF711!0.83!8.75!ZNF711;;chr19:38720294..38720348,-!p1@DPF1!0.83!7.34!DPF1;;chr6:45296028..45296034,+!p24@RUNX2!0.83!5.78!RUNX2;;chr3:114343870..114343887,-!p9@ZBTB20!0.82!5.61!ZBTB20;;chr16:54964740..54964789,+!p1@IRX5!0.81!8.17!IRX5;;chr6:28321909..28321965,-!p3@ZNF323!0.81!5.53!ZNF323;;chr7:27213893..27213954,-!p1@HOXA10!0.81!5.53!HOXA10;;chr12:54393880..54393962,+!p1@HOXC9!0.81!5.45!HOXC9;;chr2:200320768..200320800,-!p4@SATB2!0.81!5.45!SATB2;;chr20:39317868..39317884,-!p1@MAFB!0.80!67.91!MAFB;;chr8:124286775..124286860,-!p2@ZHX1!0.80!24.92!ZHX1;;chr5:174151553..174151610,+!p1@MSX2!0.80!9.16!MSX2;;chr2:176973498..176973524,+!p1@HOXD10!0.80!5.28!HOXD10;;chr19:58111241..58111292,+!p1@ZNF530!0.79!18.89!ZNF530;;chr2:71127699..71127744,+!p1@VAX2!0.79!11.30!VAX2;;chr11:462995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@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000332,FF:0000593,FF:12858-137D5
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 |id=FF:12858-137D5
 |is_a=EFO:0002091;;FF:0000593
 |is_obsolete=
 |library_id=CNhs12952
-|library_id_phase_based=1:CNhs12952
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-|name=Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)
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+|name=Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification
 |namespace=FANTOM5
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@@ Line 66: / Line 81: @@
 |rna_sample_type=
 |rna_tube_id=137D5
-|rna_weight_ug=5.30
+|rna_weight_ug=5.3
+|rnaseq_library_id=SRhi10065.GTTTCG
 |sample_age=
 |sample_category=time courses
@@ Line 88: / Line 104: @@
 |sample_strain=
 |sample_tissue=
-|timecourse=human_Saos_osteosarcoma
+|time= 00hr00min
+|timecourse=Saos_calcification
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12858-137D5;search_select_hide=table117:FF:12858-137D5
 }}

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FF:12858-137D5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:46, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0