UBERON:0004175: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=internal | |name=internal genitalia | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:44, 12 September 2014
| Name: | internal genitalia | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals" [GO:0035260] | ||
| Xrefs: |
| ||
| Synonyms: |
"internal genitalia" EXACT [] "internal reproductive organ" EXACT [] "internal sex organ" EXACT [] | ||
| Subset: | organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003133(reproductive organ) |
|---|
Children
| is a: | UBERON:0003975 (internal female genitalia),UBERON:0004054 (internal male genitalia) |
|---|---|
| part of: | UBERON:0000995 (uterus) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10013-101C4 (cervix, adult, pool1)
- 10100-102D1 (uterus, adult, pool1)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10204-103F6 (vagina, adult)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
- 10497-107C2 (endometrial carcinoma cell line:OMC-2)
- 10530-107F8
... further results Mouse (Mus musculus)
- 10013-101C4 (cervix, adult, pool1)
- 10100-102D1 (uterus, adult, pool1)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10204-103F6 (vagina, adult)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
- 10497-107C2 (endometrial carcinoma cell line:OMC-2)
- 10530-107F8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004175 (internal genitalia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.36e-40 | FFCP PHASE2:Hg19::chr6:8436206..8436217,-#_e44249ac3ec06168788e9efa8c1ae5a3 | p7@SLC35B3 |
| 6.36e-40 | FFCP PHASE1:Hg19::chr6:8436206..8436217,-#_e44249ac3ec06168788e9efa8c1ae5a3 | p7@SLC35B3 |
| 3.75e-39 | FFCP PHASE1:Mm9::chr2:35288301..35288317,-#_9252825bbd66bf215db030426bc1aff1 | p11@Ggta1 |
| 3.75e-39 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_9252825bbd66bf215db030426bc1aff1 | p@chr2:69981027..69981032, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chr3:131159868..131159874,+#_9252825bbd66bf215db030426bc1aff1 | p@chr3:131159868..131159874, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chr2:35288421..35288430,-#_9252825bbd66bf215db030426bc1aff1 | p17@Ggta1 |
| 3.75e-39 | FFCP PHASE1:Mm9::chr2:35288421..35288430,-#_9252825bbd66bf215db030426bc1aff1 | p17@Ggta1 |
| 3.75e-39 | FFCP PHASE1:Mm9::chr3:131159868..131159874,+#_9252825bbd66bf215db030426bc1aff1 | p@chr3:131159868..131159874, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chr1:11079738..11079750,+#_9252825bbd66bf215db030426bc1aff1 | p@chr1:11079738..11079750, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chr1:11079738..11079750,+#_9252825bbd66bf215db030426bc1aff1 | p@chr1:11079738..11079750, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_9252825bbd66bf215db030426bc1aff1 | p@chr2:69981027..69981032, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chr2:35288301..35288317,-#_9252825bbd66bf215db030426bc1aff1 | p11@Ggta1 |
| 1.08e-38 | FFCP PHASE2:Hg19::chr22:44708774..44708788,-#_b8d739fde63a42fc224b69dcbeb2105f | p3@KIAA1644 |
| 1.08e-38 | FFCP PHASE1:Hg19::chr22:44708774..44708788,-#_b8d739fde63a42fc224b69dcbeb2105f | p3@KIAA1644 |
| 3.77e-36 | FFCP PHASE1:Mm9::chr10:5636336..5636347,-#_0aa7e769271c04fc8bedf8fb630e6657 | p9@Esr1 |
| 3.77e-36 | FFCP PHASE2:Mm9::chr10:5636336..5636347,-#_0aa7e769271c04fc8bedf8fb630e6657 | p9@Esr1 |
| 2.89e-35 | FFCP PHASE1:Mm9::chr4:98365828..98365839,-#_eab7e986bbc138c63fb9521e4f8a07c4 | p@chr4:98365828..98365839, - |
| 2.89e-35 | FFCP PHASE2:Mm9::chr4:98365828..98365839,-#_eab7e986bbc138c63fb9521e4f8a07c4 | p@chr4:98365828..98365839, - |
| 1.33e-31 | FFCP PHASE2:Mm9::chr2:35288345..35288356,-#_72ecef95e998d16ce28864b3cc50dc77 | p14@Ggta1 |
| 1.33e-31 | FFCP PHASE1:Mm9::chr2:35288345..35288356,-#_72ecef95e998d16ce28864b3cc50dc77 | p14@Ggta1 |
| 1.48e-31 | FFCP PHASE2:Hg19::chr22:44708735..44708746,-#_ed1c8539b5fa613c8e8356e5eaa008f5 | p2@KIAA1644 |
| 1.48e-31 | FFCP PHASE1:Hg19::chr22:44708735..44708746,-#_ed1c8539b5fa613c8e8356e5eaa008f5 | p2@KIAA1644 |
| 1.17e-30 | FFCP PHASE2:Mm9::chr4:35105498..35105509,-#_959ff9e5b765276f1bd4c41300c3ce73 | p@chr4:35105498..35105509, - |
| 1.17e-30 | FFCP PHASE1:Mm9::chr4:35105498..35105509,-#_959ff9e5b765276f1bd4c41300c3ce73 | p@chr4:35105498..35105509, - |
| 1.17e-30 | FFCP PHASE2:Mm9::chr2:20261055..20261071,-#_959ff9e5b765276f1bd4c41300c3ce73 | p@chr2:20261055..20261071, - |
| 1.17e-30 | FFCP PHASE1:Mm9::chr2:20261055..20261071,-#_959ff9e5b765276f1bd4c41300c3ce73 | p@chr2:20261055..20261071, - |
| 2.36e-30 | FFCP PHASE1:Mm9::chr19:21245439..21245446,-#_11450aa412f2e438bce96bd8eee3745b | p3@uc008gyt.1 |
| 2.36e-30 | FFCP PHASE2:Mm9::chr19:21245439..21245446,-#_11450aa412f2e438bce96bd8eee3745b | p3@uc008gyt.1 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr1:11079819..11079834,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr1:11079819..11079834, + |
| 8.84e-30 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_becc3e86b7d1fcd43ece1ca18be81989 | p4@Spink12 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr14:14765101..14765107,+#_becc3e86b7d1fcd43ece1ca18be81989 | p1@ENSMUST00000159275, p1@uc007sgd.1 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr8:26316320..26316331,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr8:26316320..26316331, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr9:40297262..40297271,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr9:40297262..40297271, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr2:131681357..131681366,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr2:131681357..131681366, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr7:150952911..150952917,-#_becc3e86b7d1fcd43ece1ca18be81989 | p3@Mrgprg |
| 8.84e-30 | FFCP PHASE2:Mm9::chr5:112904886..112904895,-#_becc3e86b7d1fcd43ece1ca18be81989 | p6@Sez6l |
| 8.84e-30 | FFCP PHASE1:Mm9::chr2:131681543..131681554,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr2:131681543..131681554, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr7:150952861..150952867,-#_becc3e86b7d1fcd43ece1ca18be81989 | p4@Mrgprg |
| 8.84e-30 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr10:127470655..127470664, + |
| 8.84e-30 | FFCP PHASE1:Mm9::chr11:71330017..71330043,+#_becc3e86b7d1fcd43ece1ca18be81989 | p1@ENSMUST00000151841 |
| 8.84e-30 | FFCP PHASE1:Mm9::chr16:20316875..20316878,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr16:20316875..20316878, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr16:92596391..92596400,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr16:92596391..92596400, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr2:131685562..131685563,-#_becc3e86b7d1fcd43ece1ca18be81989 | p2@Erv3 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr11:46564064..46564079,+#_becc3e86b7d1fcd43ece1ca18be81989 | p2@Havcr1 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr7:129057811..129057817,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr7:129057811..129057817, + |
| 8.84e-30 | FFCP PHASE1:Mm9::chr10:115614273..115614299,+#_becc3e86b7d1fcd43ece1ca18be81989 | p17@Ptprr |
| 8.84e-30 | FFCP PHASE2:Mm9::chr13:27437553..27437554,+#_becc3e86b7d1fcd43ece1ca18be81989 | p3@Prl8a2 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr13:61036176..61036186,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr13:61036176..61036186, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr6:48855132..48855142,+#_becc3e86b7d1fcd43ece1ca18be81989 | p11@Abp1 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr11:71330017..71330043,+#_becc3e86b7d1fcd43ece1ca18be81989 | p1@ENSMUST00000151841 |
| 8.84e-30 | FFCP PHASE1:Mm9::chr14:56857569..56857584,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr14:56857569..56857584, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr6:121306890..121306895,+#_becc3e86b7d1fcd43ece1ca18be81989 | p11@Slc6a12 |
| 8.84e-30 | FFCP PHASE1:Mm9::chr6:48855132..48855142,+#_becc3e86b7d1fcd43ece1ca18be81989 | p11@Abp1 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr9:40297312..40297323,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr9:40297312..40297323, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr2:131681543..131681554,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr2:131681543..131681554, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr6:121306890..121306895,+#_becc3e86b7d1fcd43ece1ca18be81989 | p11@Slc6a12 |
| 8.84e-30 | FFCP PHASE1:Mm9::chr9:40297262..40297271,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr9:40297262..40297271, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr14:14765101..14765107,+#_becc3e86b7d1fcd43ece1ca18be81989 | p1@ENSMUST00000159275, p1@uc007sgd.1 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr5:112905373..112905419,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr5:112905373..112905419, + |
| 8.84e-30 | FFCP PHASE1:Mm9::chr17:29601992..29602002,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr17:29601992..29602002, + |
| 8.84e-30 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr10:127470655..127470664, + |
| 8.84e-30 | FFCP PHASE2:Mm9::chr7:150952890..150952901,-#_becc3e86b7d1fcd43ece1ca18be81989 | p2@Mrgprg |
| 8.84e-30 | FFCP PHASE1:Mm9::chr7:129057811..129057817,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr7:129057811..129057817, + |
| 8.84e-30 | FFCP PHASE2:Mm9::chr18:46301228..46301253,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr18:46301228..46301253, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr13:27437553..27437554,+#_becc3e86b7d1fcd43ece1ca18be81989 | p3@Prl8a2 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr16:20316875..20316878,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr16:20316875..20316878, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr17:29601992..29602002,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr17:29601992..29602002, + |
| 8.84e-30 | FFCP PHASE1:Mm9::chr6:97777247..97777258,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr6:97777247..97777258, + |
| 8.84e-30 | FFCP PHASE1:Mm9::chrX:51027816..51027821,+#_becc3e86b7d1fcd43ece1ca18be81989 | p2@4930502E18Rik |
| 8.84e-30 | FFCP PHASE1:Mm9::chr13:61036161..61036172,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr13:61036161..61036172, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr2:166407469..166407519,-#_becc3e86b7d1fcd43ece1ca18be81989 | p4@Prex1 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr9:40297334..40297345,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr9:40297334..40297345, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr2:131680870..131680891,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr2:131680870..131680891, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr9:40297312..40297323,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr9:40297312..40297323, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr5:112904886..112904895,-#_becc3e86b7d1fcd43ece1ca18be81989 | p6@Sez6l |
| 8.84e-30 | FFCP PHASE2:Mm9::chr13:27434787..27434799,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr13:27434787..27434799, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr10:21130385..21130393,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr10:21130385..21130393, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr6:48854959..48854972,+#_becc3e86b7d1fcd43ece1ca18be81989 | p6@Abp1 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr10:115614018..115614024,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr10:115614018..115614024, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr7:150952911..150952917,-#_becc3e86b7d1fcd43ece1ca18be81989 | p3@Mrgprg |
| 8.84e-30 | FFCP PHASE2:Mm9::chr7:109630203..109630210,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr7:109630203..109630210, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr2:131680870..131680891,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr2:131680870..131680891, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr7:109630203..109630210,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr7:109630203..109630210, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr14:56857569..56857584,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr14:56857569..56857584, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr12:8339007..8339020,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr12:8339007..8339020, + |
| 8.84e-30 | FFCP PHASE2:Mm9::chr2:124475078..124475084,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr2:124475078..124475084, + |
| 8.84e-30 | FFCP PHASE2:Mm9::chrX:51027816..51027821,+#_becc3e86b7d1fcd43ece1ca18be81989 | p2@4930502E18Rik |
| 8.84e-30 | FFCP PHASE1:Mm9::chr7:150952861..150952867,-#_becc3e86b7d1fcd43ece1ca18be81989 | p4@Mrgprg |
| 8.84e-30 | FFCP PHASE1:Mm9::chr18:46301228..46301253,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr18:46301228..46301253, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr4:140462693..140462700,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr4:140462693..140462700, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr12:8339007..8339020,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr12:8339007..8339020, + |
| 8.84e-30 | FFCP PHASE1:Mm9::chr13:61036176..61036186,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr13:61036176..61036186, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr9:40297346..40297350,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr9:40297346..40297350, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr6:121306916..121306921,+#_becc3e86b7d1fcd43ece1ca18be81989 | p12@Slc6a12 |
| 8.84e-30 | FFCP PHASE2:Mm9::chr2:131681104..131681114,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr2:131681104..131681114, + |
| 8.84e-30 | FFCP PHASE1:Mm9::chr9:40297334..40297345,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr9:40297334..40297345, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr5:112905373..112905419,+#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr5:112905373..112905419, + |
| 8.84e-30 | FFCP PHASE2:Mm9::chr10:21130385..21130393,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr10:21130385..21130393, - |
| 8.84e-30 | FFCP PHASE1:Mm9::chr4:140462693..140462700,-#_becc3e86b7d1fcd43ece1ca18be81989 | p@chr4:140462693..140462700, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr10:115614273..115614299,+#_becc3e86b7d1fcd43ece1ca18be81989 | p17@Ptprr |
