UBERON:0001004: Difference between revisions
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|located_in= | |located_in= | ||
|name=respiratory system | |name=respiratory system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:13, 12 September 2014
| Name: | respiratory system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Functional system which consists of structures involved in respiration.." [Wikipedia:Respiratory_system] | ||
| Xrefs: |
| ||
| Synonyms: |
"apparatus respiratorius" EXACT [] "apparatus respiratorius " RELATED [BTO:0000203] "Atmungssystem" RELATED [BTO:0000203] "respiratory system" EXACT [] "systema respiratorium" RELATED LATIN [Wikipedia:Respiratory_system] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272 | ||
| Subset: |
functional_classification uberon_slim vertebrate_core |
200px-Respiratory_system_complete_en.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system) |
|---|---|
| disjoint_from: | UBERON:0001007(digestive system),UBERON:0001008(renal system),UBERON:0001009(circulatory system),UBERON:0001016(nervous system),UBERON:0001033(gustatory system),UBERON:0001434(skeletal system),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system) |
Children
| disjoint from: | UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system) |
|---|---|
| part of: | UBERON:0000004 (olfactory apparatus),UBERON:0000065 (respiratory tract),UBERON:0000171 (respiration organ),UBERON:0001005 (respiratory airway),UBERON:0001042 (chordate pharynx),UBERON:0001103 (diaphragm),UBERON:0001825 (paranasal sinus),UBERON:0003469 (respiratory system artery),UBERON:0003504 (respiratory system blood vessel),UBERON:0003643 (respiratory system arterial blood vessel),UBERON:0003831 (respiratory system muscle),UBERON:0004225 (respiratory system smooth muscle),UBERON:0004785 (respiratory system mucosa),UBERON:0004807 (respiratory system epithelium),UBERON:0004830 (respiratory system skeletal muscle),UBERON:0004903 (bronchoalveolar duct junction) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10093-102C3 (salivary gland, adult, pool1)
- 10099-102C9
... further results Mouse (Mus musculus)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10093-102C3 (salivary gland, adult, pool1)
- 10099-102C9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001004 (respiratory system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.75e-39 | FFCP PHASE2:Mm9::chr2:26212358..26212425,-#_4f841e863c09055763712acac43eb819 | p@chr2:26212358..26212425, - |
| 1.75e-39 | FFCP PHASE1:Mm9::chr2:26212358..26212425,-#_4f841e863c09055763712acac43eb819 | p@chr2:26212358..26212425, - |
| 6.87e-38 | FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_b80633d4a4f18f740684cefc904d5d43 | p2@ALDH3A1 |
| 6.87e-38 | FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_b80633d4a4f18f740684cefc904d5d43 | p2@ALDH3A1 |
| 3.62e-36 | FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_90f848660a33c0b6e32e095049e920b3 | p4@uc009bpa.1 |
| 3.62e-36 | FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_90f848660a33c0b6e32e095049e920b3 | p4@uc009bpa.1 |
| 5.83e-36 | FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_3b5b4fa891ee5c5126760f7560b71237 | p8@uc009bpa.1 |
| 5.83e-36 | FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_3b5b4fa891ee5c5126760f7560b71237 | p8@uc009bpa.1 |
| 1.54e-34 | FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_56127415c5639172962772b0c9b478fd | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 1.54e-34 | FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_56127415c5639172962772b0c9b478fd | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 2.37e-34 | FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_0e6db7152fbf0ccc34ad5e1271f30bb1 | p5@Tcf7 |
| 2.37e-34 | FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_0e6db7152fbf0ccc34ad5e1271f30bb1 | p5@Tcf7 |
| 2.86e-34 | FFCP PHASE1:Hg19::chr17:19651598..19651620,-#_f8d8943866d2d27db87fe2e3d2f41b11 | p1@ALDH3A1 |
| 2.86e-34 | FFCP PHASE2:Hg19::chr17:19651598..19651620,-#_f8d8943866d2d27db87fe2e3d2f41b11 | p1@ALDH3A1 |
| 3.22e-34 | FFCP PHASE2:Mm9::chr6:124838183..124838199,-#_9c9f9d5cb9bb20fea98297b606d29550 | p2@Cd4 |
| 3.22e-34 | FFCP PHASE1:Mm9::chr6:124838183..124838199,-#_9c9f9d5cb9bb20fea98297b606d29550 | p2@Cd4 |
| 4.88e-34 | FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_97b4c85e61c72d50ecb79bc6d2e45444 | p@chr12:108361918..108361930, - |
| 4.88e-34 | FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_97b4c85e61c72d50ecb79bc6d2e45444 | p@chr12:108361918..108361930, - |
| 4.88e-34 | FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_97b4c85e61c72d50ecb79bc6d2e45444 | p@chr6:41491752..41491776, - |
| 4.88e-34 | FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_97b4c85e61c72d50ecb79bc6d2e45444 | p@chr6:41491752..41491776, - |
| 5.45e-34 | FFCP PHASE2:Mm9::chr6:33991787..33991793,-#_e358035bdc4f8e478730ee586d91e6e6 | p@chr6:33991787..33991793, - |
| 5.45e-34 | FFCP PHASE1:Mm9::chr6:33991787..33991793,-#_e358035bdc4f8e478730ee586d91e6e6 | p@chr6:33991787..33991793, - |
| 4.58e-33 | FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_86791a9f0c8c1bcbb7cd44a705df83f9 | p2@ENSMUST00000103283 |
| 4.58e-33 | FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_86791a9f0c8c1bcbb7cd44a705df83f9 | p2@ENSMUST00000103283 |
| 5.19e-33 | FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_74658944c200768506b08ba24029b0e7 | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 5.19e-33 | FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_74658944c200768506b08ba24029b0e7 | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 1.75e-32 | FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_b66872afbb21b75a924b913185b81228 | p@chr6:41494001..41494028, + |
| 1.75e-32 | FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_b66872afbb21b75a924b913185b81228 | p@chr6:41494001..41494028, + |
| 2.21e-32 | FFCP PHASE1:Mm9::chr7:25692688..25692751,+#_5f3e2f7659130c24b4399fbaad676968 | p5@Arhgef1 |
| 2.21e-32 | FFCP PHASE2:Mm9::chr7:25692688..25692751,+#_5f3e2f7659130c24b4399fbaad676968 | p5@Arhgef1 |
| 2.32e-32 | FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_1285009a5b9a41854e1875d2d22a6d95 | p@chr9:44807434..44807445, - |
| 2.32e-32 | FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_1285009a5b9a41854e1875d2d22a6d95 | p@chr9:44807434..44807445, - |
| 2.56e-32 | FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_a81d898ad2cbb75ddaeaab967ddd564a | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 2.56e-32 | FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_a81d898ad2cbb75ddaeaab967ddd564a | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 2.6e-32 | FFCP PHASE1:Mm9::chr12:74842928..74842966,+#_8e46d406dbb1dae1c94046508e4a47ad | p@chr12:74842928..74842966, + |
| 2.6e-32 | FFCP PHASE2:Mm9::chr12:74842928..74842966,+#_8e46d406dbb1dae1c94046508e4a47ad | p@chr12:74842928..74842966, + |
| 2.94e-32 | FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_3c614ab6c4ce2b7433a27dbc638a41f9 | p11@Prkcq |
| 2.94e-32 | FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_3c614ab6c4ce2b7433a27dbc638a41f9 | p11@Prkcq |
| 3.0e-32 | FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_2f3ea996a06ceec1564af4158fc17672 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 3.0e-32 | FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_2f3ea996a06ceec1564af4158fc17672 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 3.55e-32 | FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_dc33cc3a81f38c1fd3404b09b246d4c0 | p@chr14:54791784..54791787, + |
| 3.55e-32 | FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_dc33cc3a81f38c1fd3404b09b246d4c0 | p@chr14:54791784..54791787, + |
| 3.64e-32 | FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_55102f4c04d6717bc9336670db2fc91e | p@chr6:41492605..41492621, + |
| 3.64e-32 | FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_55102f4c04d6717bc9336670db2fc91e | p@chr6:41492605..41492621, + |
| 4.3e-32 | FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_2fe5fa914704c7e3b5ec5ae829cce4ea | p@chr9:44809185..44809215, - |
| 4.3e-32 | FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_2fe5fa914704c7e3b5ec5ae829cce4ea | p@chr9:44809185..44809215, - |
| 4.87e-32 | FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_2e0b4a899dcfb150dff95650fabee0a3 | p1@ENSMUST00000103263 |
| 4.87e-32 | FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_2e0b4a899dcfb150dff95650fabee0a3 | p1@ENSMUST00000103263 |
| 5.15e-32 | FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_28b4a91ae5c5d621345f149d0caebac4 | p@chr9:44793518..44793537, + |
| 5.15e-32 | FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_28b4a91ae5c5d621345f149d0caebac4 | p@chr9:44793518..44793537, + |
| 5.94e-32 | FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_ef577a5497d0b19988ae2bef7b13f204 | p@chr6:41071548..41071565, + |
| 5.94e-32 | FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_ef577a5497d0b19988ae2bef7b13f204 | p@chr6:41071548..41071565, + |
| 7.75e-32 | FFCP PHASE1:Mm9::chr6:41483853..41483880,+#_bc7dd5ac3ee8bbc4e823aba330094d72 | p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1 |
| 7.75e-32 | FFCP PHASE2:Mm9::chr6:41483853..41483880,+#_bc7dd5ac3ee8bbc4e823aba330094d72 | p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1 |
| 1.06e-31 | FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_d32e588b6475e5af0f9d3b41bc46a2bb | p5@Themis |
| 1.06e-31 | FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_d32e588b6475e5af0f9d3b41bc46a2bb | p5@Themis |
| 1.15e-31 | FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_e4afc4233e08434d23a50ae9f2fe8bb0 | p5@uc009bpa.1 |
| 1.15e-31 | FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_e4afc4233e08434d23a50ae9f2fe8bb0 | p5@uc009bpa.1 |
| 1.36e-31 | FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_76624de75a53a110ad30f9fdacd421d5 | p2@uc009bnp.1, p2@uc012eki.1 |
| 1.36e-31 | FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_76624de75a53a110ad30f9fdacd421d5 | p2@uc009bnp.1, p2@uc012eki.1 |
| 1.4e-30 | FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_e242cf8a0c7b67b8ddbc58f8d0d94c48 | p@chr14:61328148..61328173, + |
| 1.4e-30 | FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_e242cf8a0c7b67b8ddbc58f8d0d94c48 | p@chr14:61328148..61328173, + |
| 1.77e-30 | FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_c04166a4ebecaeb6710653795ad96da9 | p1@uc012ekr.1 |
| 1.77e-30 | FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_c04166a4ebecaeb6710653795ad96da9 | p1@uc012ekr.1 |
| 2.01e-30 | FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_74bba1fc34402356d5a982dbacf7b775 | p2@1810009J06Rik |
| 2.01e-30 | FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_74bba1fc34402356d5a982dbacf7b775 | p2@1810009J06Rik |
| 2.38e-30 | FFCP PHASE2:Mm9::chr11:52067405..52067434,-#_9135f8347180318b24be7fd50f4c0f46 | p@chr11:52067405..52067434, - |
| 2.38e-30 | FFCP PHASE1:Mm9::chr11:52067405..52067434,-#_9135f8347180318b24be7fd50f4c0f46 | p@chr11:52067405..52067434, - |
| 2.41e-30 | FFCP PHASE1:Hg19::chr14:37131058..37131139,+#_7c2d2a81ae0617205273b4cc77d25fd9 | p1@PAX9 |
| 2.41e-30 | FFCP PHASE2:Hg19::chr14:37131058..37131139,+#_7c2d2a81ae0617205273b4cc77d25fd9 | p1@PAX9 |
| 2.49e-30 | FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_176eaeb53a334fced44f289d2b0a10bf | p1@uc012ekk.1 |
| 2.49e-30 | FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_176eaeb53a334fced44f289d2b0a10bf | p1@uc012ekk.1 |
| 2.71e-30 | FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_9f16aa5101eb60b9d19aa5512cba1ffe | p1@ENSMUST00000103265 |
| 2.71e-30 | FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_9f16aa5101eb60b9d19aa5512cba1ffe | p1@ENSMUST00000103265 |
| 2.71e-30 | FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_9f16aa5101eb60b9d19aa5512cba1ffe | p3@uc009bpo.1, p3@uc009bpp.1 |
| 2.71e-30 | FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_9f16aa5101eb60b9d19aa5512cba1ffe | p3@uc009bpo.1, p3@uc009bpp.1 |
| 2.77e-30 | FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_edab2b5e7f9d9a417196f37cfafe48d2 | p@chr7:133512043..133512060, - |
| 2.77e-30 | FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_edab2b5e7f9d9a417196f37cfafe48d2 | p@chr7:133512043..133512060, - |
| 3.2e-30 | FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_df750dd8c72a8c49ae0594517decb629 | p2@uc009bpa.1 |
| 3.2e-30 | FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_df750dd8c72a8c49ae0594517decb629 | p2@uc009bpa.1 |
| 3.45e-30 | FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_af92e727164e468a3bda30d00743f6e7 | p2@Sh2d1a |
| 3.45e-30 | FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_af92e727164e468a3bda30d00743f6e7 | p2@Sh2d1a |
| 3.95e-30 | FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_09fb907181798c7bdc25840b9c09896c | p5@Trat1 |
| 3.95e-30 | FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_09fb907181798c7bdc25840b9c09896c | p5@Trat1 |
| 4.08e-30 | FFCP PHASE2:Mm9::chr7:137789187..137789206,+#_61d87707485f6e3b82d2d8ad9a4fa762 | p@chr7:137789187..137789206, + |
| 4.08e-30 | FFCP PHASE1:Mm9::chr7:137789187..137789206,+#_61d87707485f6e3b82d2d8ad9a4fa762 | p@chr7:137789187..137789206, + |
| 4.47e-30 | FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_5b936b4cd8d41d26c1baa9eb4a568db4 | p@chr4:125978325..125978339, - |
| 4.47e-30 | FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_5b936b4cd8d41d26c1baa9eb4a568db4 | p8@Lat |
| 4.47e-30 | FFCP PHASE1:Mm9::chr11:87627824..87627837,-#_5b936b4cd8d41d26c1baa9eb4a568db4 | p@chr11:87627824..87627837, - |
| 4.47e-30 | FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_5b936b4cd8d41d26c1baa9eb4a568db4 | p8@Lat |
| 4.47e-30 | FFCP PHASE2:Mm9::chr11:87627824..87627837,-#_5b936b4cd8d41d26c1baa9eb4a568db4 | p@chr11:87627824..87627837, - |
| 4.47e-30 | FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_5b936b4cd8d41d26c1baa9eb4a568db4 | p6@uc009bpa.1 |
| 4.47e-30 | FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_5b936b4cd8d41d26c1baa9eb4a568db4 | p@chr4:125978325..125978339, - |
| 4.47e-30 | FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_5b936b4cd8d41d26c1baa9eb4a568db4 | p6@uc009bpa.1 |
| 4.51e-30 | FFCP PHASE1:Mm9::chr6:41497343..41497377,+#_094255b2f66a3b7b7f8ee251bd6c58a6 | p@chr6:41497343..41497377, + |
| 4.51e-30 | FFCP PHASE2:Mm9::chr6:41497343..41497377,+#_094255b2f66a3b7b7f8ee251bd6c58a6 | p@chr6:41497343..41497377, + |
| 4.54e-30 | FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_926377efd4c0c43d3ae4f2cbeb539755 | p@chr14:54794540..54794554, + |
| 4.54e-30 | FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_926377efd4c0c43d3ae4f2cbeb539755 | p@chr14:54794540..54794554, + |
| 4.7e-30 | FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_59102399d06d06428e4f8e1a7ce62bd6 | p2@Gm5409 |
| 4.7e-30 | FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_59102399d06d06428e4f8e1a7ce62bd6 | p2@Gm5409 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The anatomical system in which the exchange of oxygen and carbon dioxide between the organism and its environment.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
