UBERON:0000488: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=atypical epithelium | |name=atypical epithelium | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:10, 12 September 2014
| Name: | atypical epithelium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Epithelium that consists of epithelial cells not arranged in one ore more layers." [CARO:MAH] | ||
| Xrefs: |
| ||
| Synonyms: | "heterogenous epithelium" EXACT [] | ||
| Alt_id: | UBERON:CARO_0000071-FMA_61741-ZFA_0001493 | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000483(epithelium) |
|---|
Children
| is a: | UBERON:0001778 (ciliary epithelium),UBERON:0002506 (iris epithelium),UBERON:0006934 (sensory epithelium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10275-104E5
- 10303-104H6
- 10331-105B7
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
- 11530-119I9 (Iris Pigment Epithelial Cells, donor1)
- 11610-120I8
- 11691-122I8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000488 (atypical epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.35e-156 | FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_02fa6539d9061ace7567bfdb49b45c3a | p@chrX:106198807..106198826, - |
| 3.35e-156 | FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_02fa6539d9061ace7567bfdb49b45c3a | p@chrX:106198807..106198826, - |
| 1.33e-112 | FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_51accc80dc22c606575f4dcab40c827a | p1@BC033145 |
| 1.33e-112 | FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_51accc80dc22c606575f4dcab40c827a | p1@BC033145 |
| 8.91e-111 | FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_7e9d93d4d444692e13fdf859706035fc | p@chr7:115723897..115723915, - |
| 8.91e-111 | FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_7e9d93d4d444692e13fdf859706035fc | p@chr7:115723897..115723915, - |
| 1.89e-110 | FFCP PHASE2:Hg19::chr12:97856211..97856221,+#_3340e744e01a17b677adb6f11b36b327 | p@chr12:97856211..97856221, + |
| 1.89e-110 | FFCP PHASE1:Hg19::chr12:97856211..97856221,+#_3340e744e01a17b677adb6f11b36b327 | p@chr12:97856211..97856221, + |
| 4.23e-89 | FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_a44952b0ce0dc76fc083fa228998fa91 | p@chr7:115723925..115723935, - |
| 4.23e-89 | FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_a44952b0ce0dc76fc083fa228998fa91 | p@chr7:115723925..115723935, - |
| 5.72e-89 | FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_fb078ad39d9aaa9327456b0d25ed9d99 | p@chr2:35680607..35680613, - |
| 5.72e-89 | FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_fb078ad39d9aaa9327456b0d25ed9d99 | p@chr2:35680607..35680613, - |
| 1.04e-88 | FFCP PHASE2:Hg19::chr8:41119800..41119811,-#_a0a18baa2ba98868e67c39537f23385f | p5@SFRP1 |
| 1.04e-88 | FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_a0a18baa2ba98868e67c39537f23385f | p@chr13:36052762..36052767, - |
| 1.04e-88 | FFCP PHASE1:Hg19::chr8:41119800..41119811,-#_a0a18baa2ba98868e67c39537f23385f | p5@SFRP1 |
| 1.04e-88 | FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_a0a18baa2ba98868e67c39537f23385f | p@chr13:36052762..36052767, - |
| 1.41e-88 | FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_469b7c29f54615aea7ca206216ca29c5 | p@chr7:131803806..131803815, + |
| 1.41e-88 | FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_469b7c29f54615aea7ca206216ca29c5 | p@chr7:131803806..131803815, + |
| 2.57e-88 | FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_4a509ec8697013895200847a53d0b44d | p@chr16:58896129..58896134, - |
| 2.57e-88 | FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_4a509ec8697013895200847a53d0b44d | p@chr16:58896129..58896134, - |
| 1.06e-78 | FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_99df2eb1e5674fb1ff8d2bae82088bca | p1@CLRN1 |
| 1.06e-78 | FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_99df2eb1e5674fb1ff8d2bae82088bca | p1@CLRN1 |
| 2.9e-78 | FFCP PHASE1:Hg19::chr8:124692287..124692298,+#_b891c696ecd3c2fdda19dbed77d16038 | p@chr8:124692287..124692298, + |
| 2.9e-78 | FFCP PHASE2:Hg19::chr8:124692287..124692298,+#_b891c696ecd3c2fdda19dbed77d16038 | p@chr8:124692287..124692298, + |
| 1.21e-74 | FFCP PHASE1:Hg19::chr14:61654180..61654191,+#_a3467ee72d16e29091c845b9bb53e148 | p33@PRKCH |
| 1.21e-74 | FFCP PHASE2:Hg19::chr14:61654180..61654191,+#_a3467ee72d16e29091c845b9bb53e148 | p33@PRKCH |
| 3.32e-74 | FFCP PHASE1:Hg19::chrX:106146585..106146594,-#_2600bddb635ef8e4f8019fefaf4d8021 | p2@RIPPLY1 |
| 3.32e-74 | FFCP PHASE2:Hg19::chrX:106146585..106146594,-#_2600bddb635ef8e4f8019fefaf4d8021 | p2@RIPPLY1 |
| 8.09e-67 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_b178ed2fc2f3a241263092dd0171ad7f | p7@PTPRU |
| 8.09e-67 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_b178ed2fc2f3a241263092dd0171ad7f | p7@PTPRU |
| 2.4e-66 | FFCP PHASE1:Hg19::chr2:210798666..210798677,+#_6516f50003ebc9281ef3908f0f8673cd | p@chr2:210798666..210798677, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr5:78112479..78112482,+#_6516f50003ebc9281ef3908f0f8673cd | p@chr5:78112479..78112482, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr2:210798666..210798677,+#_6516f50003ebc9281ef3908f0f8673cd | p@chr2:210798666..210798677, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr5:78112479..78112482,+#_6516f50003ebc9281ef3908f0f8673cd | p@chr5:78112479..78112482, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr13:36052713..36052724,-#_ea62c70a5d84f64bc1e25f13402687af | p@chr13:36052713..36052724, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr13:36052713..36052724,-#_ea62c70a5d84f64bc1e25f13402687af | p@chr13:36052713..36052724, - |
| 4.02e-64 | FFCP PHASE1:Hg19::chr11:27240276..27240289,-#_805fa6334b8d8e4459930460b72e7e40 | p1@ENST00000526061 |
| 4.02e-64 | FFCP PHASE2:Hg19::chr11:27240276..27240289,-#_805fa6334b8d8e4459930460b72e7e40 | p1@ENST00000526061 |
| 7.67e-64 | FFCP PHASE2:Hg19::chr10:91294399..91294401,-#_79059969329157237d0ae567c86b7c72 | p@chr10:91294399..91294401, - |
| 7.67e-64 | FFCP PHASE1:Hg19::chr10:91294399..91294401,-#_79059969329157237d0ae567c86b7c72 | p@chr10:91294399..91294401, - |
| 1.46e-63 | FFCP PHASE1:Hg19::chr7:43417422..43417435,+#_a8c7d216147d60c87ad0bb953a833097 | p16@HECW1 |
| 1.46e-63 | FFCP PHASE2:Hg19::chr7:43417422..43417435,+#_a8c7d216147d60c87ad0bb953a833097 | p16@HECW1 |
| 8.93e-62 | FFCP PHASE1:Hg19::chr2:66670833..66670853,+#_5137eff0f9320e78be5b18dc0b75cacf | p@chr2:66670833..66670853, + |
| 8.93e-62 | FFCP PHASE2:Hg19::chr2:66670833..66670853,+#_5137eff0f9320e78be5b18dc0b75cacf | p@chr2:66670833..66670853, + |
| 1.67e-61 | FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_4d2f1a5a084de192a0fc297e75923303 | p1@OPTC |
| 1.67e-61 | FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_4d2f1a5a084de192a0fc297e75923303 | p1@OPTC |
| 2.65e-61 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_cb368d1aed712998d9f83cc2b1a55d73 | p3@SIX6 |
| 2.65e-61 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_cb368d1aed712998d9f83cc2b1a55d73 | p3@SIX6 |
| 1.25e-60 | FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_8c401108f38fc2ac22dadefdb3e345f5 | p8@NBEA |
| 1.25e-60 | FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_8c401108f38fc2ac22dadefdb3e345f5 | p8@NBEA |
| 2.31e-60 | FFCP PHASE1:Hg19::chr14:68569696..68569698,-#_7dbb39ce24386a06b5a2567cd54728d0 | p@chr14:68569696..68569698, - |
| 2.31e-60 | FFCP PHASE2:Hg19::chr14:68569696..68569698,-#_7dbb39ce24386a06b5a2567cd54728d0 | p@chr14:68569696..68569698, - |
| 3.36e-57 | FFCP PHASE1:Hg19::chr14:80892074..80892111,-#_372721af2873864c7287b00b71ba43f6 | p@chr14:80892074..80892111, - |
| 3.36e-57 | FFCP PHASE2:Hg19::chr14:80892074..80892111,-#_372721af2873864c7287b00b71ba43f6 | p@chr14:80892074..80892111, - |
| 1.48e-56 | FFCP PHASE1:Hg19::chr2:45166478..45166502,-#_e3d516f0ff6d10a7b878758b9302176d | p3@ENST00000437916 |
| 1.48e-56 | FFCP PHASE2:Hg19::chr2:45166478..45166502,-#_e3d516f0ff6d10a7b878758b9302176d | p3@ENST00000437916 |
| 2.9e-56 | FFCP PHASE2:Hg19::chr1:26498321..26498327,-#_f57bcc4313f6fc14f225ceeba5bda7e8 | p1@ENST00000448923 |
| 2.9e-56 | FFCP PHASE1:Hg19::chr1:26498321..26498327,-#_f57bcc4313f6fc14f225ceeba5bda7e8 | p1@ENST00000448923 |
| 3.8e-56 | FFCP PHASE1:Hg19::chr8:94713146..94713159,+#_261499220766c387a4ce930f2b39fd18 | p8@FAM92A1 |
| 3.8e-56 | FFCP PHASE2:Hg19::chr8:94713146..94713159,+#_261499220766c387a4ce930f2b39fd18 | p8@FAM92A1 |
| 5.53e-56 | FFCP PHASE1:Hg19::chr4:183006122..183006131,-#_aa034e61a493ece2fa9fac35be4609e0 | p3@ENST00000505537 |
| 5.53e-56 | FFCP PHASE2:Hg19::chr4:183006122..183006131,-#_aa034e61a493ece2fa9fac35be4609e0 | p3@ENST00000505537 |
| 1.06e-53 | FFCP PHASE1:Hg19::chr8:99076582..99076599,+#_4ad6631d565eab33727243a751cfd358 | p6@C8orf47 |
| 1.06e-53 | FFCP PHASE2:Hg19::chr8:99076582..99076599,+#_4ad6631d565eab33727243a751cfd358 | p6@C8orf47 |
| 1.19e-52 | FFCP PHASE1:Hg19::chr4:77356957..77356973,+#_b50aaddb93801edc16e74a18d382eaa9 | p20@SHROOM3 |
| 1.19e-52 | FFCP PHASE2:Hg19::chr4:77356957..77356973,+#_b50aaddb93801edc16e74a18d382eaa9 | p20@SHROOM3 |
| 6.43e-51 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_13078e402ac983e36c8c6085173fdaa7 | p10@NLGN1 |
| 6.43e-51 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_13078e402ac983e36c8c6085173fdaa7 | p10@NLGN1 |
| 2.23e-50 | FFCP PHASE1:Hg19::chr3:110846331..110846333,+#_3042fa344b68f17b3c62c0dd7c1245ea | p@chr3:110846331..110846333, + |
| 2.23e-50 | FFCP PHASE2:Hg19::chr3:110846331..110846333,+#_3042fa344b68f17b3c62c0dd7c1245ea | p@chr3:110846331..110846333, + |
| 2.64e-50 | FFCP PHASE1:Hg19::chr2:237677787..237677800,+#_deb59fed8b9406fbc832a2bd68ff1e7f | p@chr2:237677787..237677800, + |
| 2.64e-50 | FFCP PHASE2:Hg19::chr2:237677787..237677800,+#_deb59fed8b9406fbc832a2bd68ff1e7f | p@chr2:237677787..237677800, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr19:30716539..30716546,+#_3aee2f77e8b7e5839e8ef74d647a9da9 | p@chr19:30716539..30716546, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr19:30716539..30716546,+#_3aee2f77e8b7e5839e8ef74d647a9da9 | p@chr19:30716539..30716546, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:63196015..63196016,+#_3aee2f77e8b7e5839e8ef74d647a9da9 | p@chr2:63196015..63196016, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:63196015..63196016,+#_3aee2f77e8b7e5839e8ef74d647a9da9 | p@chr2:63196015..63196016, + |
| 3.11e-50 | FFCP PHASE1:Hg19::chr1:218579326..218579337,+#_092bd070f4dd575b1ef96d495e0bf291 | p@chr1:218579326..218579337, + |
| 3.11e-50 | FFCP PHASE2:Hg19::chr1:218579326..218579337,+#_092bd070f4dd575b1ef96d495e0bf291 | p@chr1:218579326..218579337, + |
| 3.69e-50 | FFCP PHASE1:Hg19::chr11:89224826..89224839,-#_d8cacf71c272aab25aa0ab02f8023d9f | p14@NOX4 |
| 3.69e-50 | FFCP PHASE2:Hg19::chr11:89224826..89224839,-#_d8cacf71c272aab25aa0ab02f8023d9f | p14@NOX4 |
| 4.0e-50 | FFCP PHASE1:Hg19::chr8:53853688..53853698,-#_93b9b05d8bd775907ffd581f90c9d125 | p3@BC033145 |
| 4.0e-50 | FFCP PHASE2:Hg19::chr8:53853688..53853698,-#_93b9b05d8bd775907ffd581f90c9d125 | p3@BC033145 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr15:79501729..79501736,+#_3c8dfbbb98f867e8e2f865e0b3e95138 | p1@MIR184 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr15:79501729..79501736,+#_3c8dfbbb98f867e8e2f865e0b3e95138 | p1@MIR184 |
| 5.16e-50 | FFCP PHASE1:Hg19::chr3:139258648..139258667,+#_4762bca8fbd5e3e6453b86627d4b4040 | p1@ENST00000381790 |
| 5.16e-50 | FFCP PHASE2:Hg19::chr3:139258648..139258667,+#_4762bca8fbd5e3e6453b86627d4b4040 | p1@ENST00000381790 |
| 6.6e-50 | FFCP PHASE1:Hg19::chr3:50191610..50191612,-#_e2b3d40f06dc983d10fc91c6f7258112 | p@chr3:50191610..50191612, - |
| 6.6e-50 | FFCP PHASE2:Hg19::chr3:50191610..50191612,-#_e2b3d40f06dc983d10fc91c6f7258112 | p@chr3:50191610..50191612, - |
| 8.47e-50 | FFCP PHASE2:Hg19::chrX:106142727..106142730,-#_83f1fa7a76580da7f6611600ddee1884 | p@chrX:106142727..106142730, - |
| 8.47e-50 | FFCP PHASE1:Hg19::chr1:12416343..12416350,+#_83f1fa7a76580da7f6611600ddee1884 | p@chr1:12416343..12416350, + |
| 8.47e-50 | FFCP PHASE2:Hg19::chr1:12416343..12416350,+#_83f1fa7a76580da7f6611600ddee1884 | p@chr1:12416343..12416350, + |
| 8.47e-50 | FFCP PHASE1:Hg19::chrX:106142727..106142730,-#_83f1fa7a76580da7f6611600ddee1884 | p@chrX:106142727..106142730, - |
| 1.95e-49 | FFCP PHASE2:Hg19::chr11:31816236..31816261,-#_ae5bdfe137a91b9505c6ecde59e8a5af | p@chr11:31816236..31816261, - |
| 1.95e-49 | FFCP PHASE1:Hg19::chr11:31816236..31816261,-#_ae5bdfe137a91b9505c6ecde59e8a5af | p@chr11:31816236..31816261, - |
| 2.27e-47 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_c0b4165729b59a58b22bbc0d705fbe76 | p10@SIX3 |
| 2.27e-47 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_c0b4165729b59a58b22bbc0d705fbe76 | p10@SIX3 |
| 2.88e-47 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_b4f59d503f258201977ee4e270d8befb | p2@SIX6 |
| 2.88e-47 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_b4f59d503f258201977ee4e270d8befb | p2@SIX6 |
| 1.69e-45 | FFCP PHASE1:Hg19::chr5:31235359..31235362,+#_156faad57aebd411455ed0ed295b0443 | p@chr5:31235359..31235362, + |
| 1.69e-45 | FFCP PHASE2:Hg19::chr5:31235359..31235362,+#_156faad57aebd411455ed0ed295b0443 | p@chr5:31235359..31235362, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelium that consists of epithelial cells not arranged in one or more layers.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
