UBERON:0000376: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=hindlimb stylopod | |name=hindlimb stylopod | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002103;;UBERON:0000978;;UBERON:0002103 | |part_of=UBERON:0002103;;UBERON:0000978;;UBERON:0002103 | ||
Latest revision as of 17:08, 12 September 2014
| Name: | hindlimb stylopod | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "In humans the thigh is the area between the pelvis and the knee. Anatomically, it is part of the lower limb. The single bone in the thigh is called the femur. This bone is very thick and strong (due to the high proportion of cortical bone), and forms a ball and socket joint at the hip, and a condylar joint at the knee. [WP,unvetted]." [Wikipedia:Thigh] | ||
| Xrefs: |
| ||
| Synonyms: |
"femur" RELATED LATIN [Wikipedia:Thigh] "fore propodium" EXACT [AAO:0000199] "forelimb propodium" EXACT [] "hind limb stylopod" EXACT [OBOL:automatic] "hindlimb stylopod" EXACT [OBOL:automatic] "hindlimb stylopodium" EXACT [OBOL:automatic] "inferior member stylopod" EXACT [OBOL:automatic] "lower extremity stylopod" EXACT [OBOL:automatic] "proximal segment of free lower limb" EXACT [FMA:24967] "stylopod of hind limb" EXACT [OBOL:automatic] "stylopod of hindlimb" EXACT [OBOL:automatic] "stylopod of inferior member" EXACT [OBOL:automatic] "stylopod of lower extremity" EXACT [OBOL:automatic] "stylopod of lower limb" EXACT [] "thigh" EXACT [] "upper leg" EXACT [MA:0000052] | ||
| Comments: | Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here | ||
| Alt_id: | UBERON:BTO_0001376-FMA_24967 |
Gray1238.png]
200px-Gray1238.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002472(stylopod),UBERON:0008784(lower limb segment) |
|---|---|
| part_of: | UBERON:0002103(hindlimb),UBERON:0000978(leg),UBERON:0002103(hindlimb) |
Children
| part of: | UBERON:0000981 (femur),UBERON:0001374 (biceps femoris),UBERON:0003826 (upper leg bone),UBERON:0004252 (hindlimb stylopod muscle),UBERON:0005254 (upper leg mesenchyme),UBERON:0015052 (femur endochondral element) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1389-42C2 (muscle (biceps femoris), neonate N30)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000376 (hindlimb stylopod), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.65e-69 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_6942e8c282ca830d23e0405e8d9f2ace | p@chr8:75097542..75097549, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_6942e8c282ca830d23e0405e8d9f2ace | p@chr2:32482372..32482381, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_6942e8c282ca830d23e0405e8d9f2ace | p@chr8:75097542..75097549, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_6942e8c282ca830d23e0405e8d9f2ace | p@chr2:32482372..32482381, + |
| 4.2e-56 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_368f072f827cad3cb4001ff58379a486 | p@chr16:24096441..24096449, + |
| 4.2e-56 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_368f072f827cad3cb4001ff58379a486 | p@chr1:174140324..174140335, - |
| 4.2e-56 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_368f072f827cad3cb4001ff58379a486 | p@chr11:67063327..67063335, + |
| 4.2e-56 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_368f072f827cad3cb4001ff58379a486 | p@chr16:24096441..24096449, + |
| 4.2e-56 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_368f072f827cad3cb4001ff58379a486 | p@chr1:174140324..174140335, - |
| 4.2e-56 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_368f072f827cad3cb4001ff58379a486 | p@chr11:67063327..67063335, + |
| 5.81e-56 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_387180ba04bd9a9348d884588fadd8ee | p@chr1:174143249..174143260, - |
| 5.81e-56 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_387180ba04bd9a9348d884588fadd8ee | p@chr1:174143249..174143260, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_52486fe40fd4715ea5a2c831a4dea303 | p@chr12:70396969..70396979, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_52486fe40fd4715ea5a2c831a4dea303 | p@chr12:70396969..70396979, + |
| 1.54e-49 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_a224e26fcde651e8de91de2fa1125b91 | p@chr19:4876870..4876880, - |
| 1.54e-49 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_a224e26fcde651e8de91de2fa1125b91 | p@chr19:4876870..4876880, - |
| 1.49e-48 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_ba8fcf1be986388e95f2d1911fddbe87 | p3@Asb16 |
| 1.49e-48 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_ba8fcf1be986388e95f2d1911fddbe87 | p3@Asb16 |
| 3.7e-47 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_0b795d4ebd9ad8403ac9ca5af4c61962 | p@chr11:75409652..75409664, + |
| 3.7e-47 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_0b795d4ebd9ad8403ac9ca5af4c61962 | p@chr11:75409652..75409664, + |
| 1.43e-46 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_6714a120122660bd278e6da257360a8a | p@chr8:126415826..126415839, + |
| 1.43e-46 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_6714a120122660bd278e6da257360a8a | p@chr8:126415826..126415839, + |
| 3.43e-44 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_afd9c4c993501dc1af2f07448e3db20d | p@chr7:133604286..133604297, - |
| 3.43e-44 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_afd9c4c993501dc1af2f07448e3db20d | p@chr7:133604286..133604297, - |
| 1.74e-43 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_bfef0a0c909ae61267c8f4d725c5484c | p5@Pla2g5 |
| 1.74e-43 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_bfef0a0c909ae61267c8f4d725c5484c | p5@Pla2g5 |
| 1.46e-40 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_4a4a0d741d6202463c3918c9b17e644a | p@chr11:67056544..67056589, - |
| 1.46e-40 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_4a4a0d741d6202463c3918c9b17e644a | p@chr11:67056544..67056589, - |
| 1.84e-40 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_efc1b019bd9135079369527cf7edfba4 | p@chr6:90552017..90552024, + |
| 1.84e-40 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_efc1b019bd9135079369527cf7edfba4 | p@chr6:90552017..90552024, + |
| 2.32e-40 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_656401e830db202d5866656b54991cfa | p@chr6:34436258..34436292, + |
| 2.32e-40 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_656401e830db202d5866656b54991cfa | p@chr6:34436258..34436292, + |
| 3.69e-40 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_7b50d5afa18fd81d19bb72c9c93a6cad | p@chr11:67069796..67069817, - |
| 3.69e-40 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_7b50d5afa18fd81d19bb72c9c93a6cad | p@chr11:67069796..67069817, - |
| 4.64e-40 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_2eb1638b987b03bde529f5dd2555d42b | p@chr8:107702369..107702386, + |
| 4.64e-40 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_2eb1638b987b03bde529f5dd2555d42b | p@chr8:107702369..107702386, + |
| 7.27e-40 | FFCP PHASE1:Mm9::chr4:150276182..150276195,-#_da42159903604a30e5e1d857ec71c362 | p13@Park7 |
| 7.27e-40 | FFCP PHASE1:Mm9::chr11:67062759..67062768,+#_da42159903604a30e5e1d857ec71c362 | p@chr11:67062759..67062768, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr11:67059271..67059285,+#_da42159903604a30e5e1d857ec71c362 | p@chr11:67059271..67059285, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr1:66991496..66991506,+#_da42159903604a30e5e1d857ec71c362 | p@chr1:66991496..66991506, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr14:70207601..70207626,+#_da42159903604a30e5e1d857ec71c362 | p@chr14:70207601..70207626, + |
| 7.27e-40 | FFCP PHASE1:Mm9::chr14:70207601..70207626,+#_da42159903604a30e5e1d857ec71c362 | p@chr14:70207601..70207626, + |
| 7.27e-40 | FFCP PHASE1:Mm9::chr1:174140351..174140357,-#_da42159903604a30e5e1d857ec71c362 | p@chr1:174140351..174140357, - |
| 7.27e-40 | FFCP PHASE1:Mm9::chr1:66991496..66991506,+#_da42159903604a30e5e1d857ec71c362 | p@chr1:66991496..66991506, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr11:67062759..67062768,+#_da42159903604a30e5e1d857ec71c362 | p@chr11:67062759..67062768, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr16:77077366..77077377,+#_da42159903604a30e5e1d857ec71c362 | p@chr16:77077366..77077377, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr1:174140351..174140357,-#_da42159903604a30e5e1d857ec71c362 | p@chr1:174140351..174140357, - |
| 7.27e-40 | FFCP PHASE2:Mm9::chr4:150276182..150276195,-#_da42159903604a30e5e1d857ec71c362 | p13@Park7 |
| 7.27e-40 | FFCP PHASE1:Mm9::chr16:77077366..77077377,+#_da42159903604a30e5e1d857ec71c362 | p@chr16:77077366..77077377, + |
| 7.27e-40 | FFCP PHASE1:Mm9::chr11:67059271..67059285,+#_da42159903604a30e5e1d857ec71c362 | p@chr11:67059271..67059285, + |
| 9.85e-40 | FFCP PHASE2:Mm9::chr7:133591409..133591416,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p11@Atp2a1 |
| 9.85e-40 | FFCP PHASE1:Mm9::chr7:133591409..133591416,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p11@Atp2a1 |
| 9.85e-40 | FFCP PHASE1:Mm9::chr7:12485281..12485286,+#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p@chr7:12485281..12485286, + |
| 9.85e-40 | FFCP PHASE1:Mm9::chr7:133590511..133590515,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p@chr7:133590511..133590515, - |
| 9.85e-40 | FFCP PHASE2:Mm9::chr11:67068279..67068289,+#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p@chr11:67068279..67068289, + |
| 9.85e-40 | FFCP PHASE1:Mm9::chr11:67068279..67068289,+#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p@chr11:67068279..67068289, + |
| 9.85e-40 | FFCP PHASE1:Mm9::chr2:52119179..52119188,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p@chr2:52119179..52119188, - |
| 9.85e-40 | FFCP PHASE2:Mm9::chr7:12485281..12485286,+#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p@chr7:12485281..12485286, + |
| 9.85e-40 | FFCP PHASE1:Mm9::chr7:133602405..133602416,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p@chr7:133602405..133602416, - |
| 9.85e-40 | FFCP PHASE2:Mm9::chr7:133590511..133590515,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p@chr7:133590511..133590515, - |
| 9.85e-40 | FFCP PHASE2:Mm9::chr2:52119179..52119188,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p@chr2:52119179..52119188, - |
| 9.85e-40 | FFCP PHASE2:Mm9::chr7:133602405..133602416,-#_bb3fb2b52a15a3ca4e4fb6ebba25f341 | p@chr7:133602405..133602416, - |
| 1.33e-39 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_4dcdffd97c4d180e8954dd94d7ae940a | p26@Myo18a |
| 1.33e-39 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_4dcdffd97c4d180e8954dd94d7ae940a | p26@Myo18a |
| 1.8e-39 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_a548a7118cc934d95fa67f68cd2afb67 | p@chr9:21934585..21934591, - |
| 1.8e-39 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_a548a7118cc934d95fa67f68cd2afb67 | p@chr9:21934585..21934591, - |
| 1.01e-37 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_1d7804792be7ba5a783f30b800baaa79 | p@chr2:32482387..32482399, + |
| 1.01e-37 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_1d7804792be7ba5a783f30b800baaa79 | p@chr2:32482387..32482399, + |
| 5.61e-37 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_36fa18f9ea58c0bb953c23bb9d5d5dfb | p@chr7:133590998..133591009, - |
| 5.61e-37 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_36fa18f9ea58c0bb953c23bb9d5d5dfb | p@chr7:133590998..133591009, - |
| 6.65e-37 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_ef49f929815ebeaafe84f4ad444ac06d | p2@Myoz3 |
| 6.65e-37 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_ef49f929815ebeaafe84f4ad444ac06d | p2@Myoz3 |
| 9.33e-37 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_a0c9a2b2c2201877175dea2f242d8dd2 | p2@Myh4 |
| 9.33e-37 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_a0c9a2b2c2201877175dea2f242d8dd2 | p2@Myh4 |
| 5.77e-36 | FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_0c663783652ba97bae0108b8e752653f | p@chr2:180890942..180890956, - |
| 5.77e-36 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_0c663783652ba97bae0108b8e752653f | p@chr2:180890942..180890956, - |
| 7.08e-36 | FFCP PHASE1:Mm9::chr4:99628094..99628114,+#_c73d73e05642b6950f9f6b7eac015ad2 | p6@Pgm2 |
| 7.08e-36 | FFCP PHASE1:Mm9::chr12:15936419..15936439,+#_c73d73e05642b6950f9f6b7eac015ad2 | p@chr12:15936419..15936439, + |
| 7.08e-36 | FFCP PHASE2:Mm9::chr12:15936419..15936439,+#_c73d73e05642b6950f9f6b7eac015ad2 | p@chr12:15936419..15936439, + |
| 7.08e-36 | FFCP PHASE2:Mm9::chr4:99628094..99628114,+#_c73d73e05642b6950f9f6b7eac015ad2 | p6@Pgm2 |
| 1.3e-35 | FFCP PHASE1:Mm9::chr7:58766361..58766370,+#_d2542315a0582bf5899c5b13e86f5bcd | p3@Ano5 |
| 1.3e-35 | FFCP PHASE1:Mm9::chr2:76729527..76729535,-#_d2542315a0582bf5899c5b13e86f5bcd | p@chr2:76729527..76729535, - |
| 1.3e-35 | FFCP PHASE2:Mm9::chr7:58766361..58766370,+#_d2542315a0582bf5899c5b13e86f5bcd | p3@Ano5 |
| 1.3e-35 | FFCP PHASE2:Mm9::chr2:76729527..76729535,-#_d2542315a0582bf5899c5b13e86f5bcd | p@chr2:76729527..76729535, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr2:180892493..180892512,-#_eb398252daded704f71a4cfa77cb966a | p@chr2:180892493..180892512, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr11:66928384..66928391,-#_eb398252daded704f71a4cfa77cb966a | p@chr11:66928384..66928391, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr11:75572402..75572409,+#_eb398252daded704f71a4cfa77cb966a | p@chr11:75572402..75572409, + |
| 1.42e-35 | FFCP PHASE1:Mm9::chr5:130349139..130349144,-#_eb398252daded704f71a4cfa77cb966a | p@chr5:130349139..130349144, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr7:51761564..51761580,-#_eb398252daded704f71a4cfa77cb966a | p@chr7:51761564..51761580, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr18:61123512..61123517,+#_eb398252daded704f71a4cfa77cb966a | p@chr18:61123512..61123517, + |
| 1.42e-35 | FFCP PHASE2:Mm9::chr7:134353840..134353843,-#_eb398252daded704f71a4cfa77cb966a | p@chr7:134353840..134353843, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr15:78021983..78021992,-#_eb398252daded704f71a4cfa77cb966a | p@chr15:78021983..78021992, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr11:67066194..67066212,-#_eb398252daded704f71a4cfa77cb966a | p@chr11:67066194..67066212, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr19:4871076..4871091,+#_eb398252daded704f71a4cfa77cb966a | p@chr19:4871076..4871091, + |
| 1.42e-35 | FFCP PHASE2:Mm9::chr4:150281470..150281484,-#_eb398252daded704f71a4cfa77cb966a | p@chr4:150281470..150281484, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr15:83962465..83962470,-#_eb398252daded704f71a4cfa77cb966a | p@chr15:83962465..83962470, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr15:78021983..78021992,-#_eb398252daded704f71a4cfa77cb966a | p@chr15:78021983..78021992, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr15:83962465..83962470,-#_eb398252daded704f71a4cfa77cb966a | p@chr15:83962465..83962470, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr19:4871076..4871091,+#_eb398252daded704f71a4cfa77cb966a | p@chr19:4871076..4871091, + |
| 1.42e-35 | FFCP PHASE1:Mm9::chr11:67064461..67064462,-#_eb398252daded704f71a4cfa77cb966a | p@chr11:67064461..67064462, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Segment of the forearm corresponding to the humerus.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
