DOID:0060072: Difference between revisions
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|located_in= | |located_in= | ||
|name=benign neoplasm | |name=benign neoplasm | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-05-11T12:18:41Z | |obo_creation_date=2011-05-11T12:18:41Z | ||
|part_of= | |part_of= | ||
Latest revision as of 16:47, 12 September 2014
| Name: | benign neoplasm |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A disease of cellular proliferation that results in abnormal growths in the body which lack the ability to metastasize." [url:http://en.wikipedia.org/wiki/Benign_neoplasm, url:http://www.nlm.nih.gov/medlineplus/benigntumors.html] |
| Created by: | lschriml |
| Creation date: | 2011-05-11T12:18:41Z |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:14566(disease of cellular proliferation) |
|---|
Children
| is a: | DOID:0060084 (cell type benign neoplasm),DOID:0060085 (organ system benign neoplasm) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10559-108A1
- 10569-108B2 (leiomyoma cell line:10964C)
- 10570-108B3 (leiomyoma cell line:15242A)
- 10571-108B4 (leiomyoma cell line:15425)
- 10572-108B5
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10724-110A4
- 10738-110B9
- 10751-110D4
Mouse (Mus musculus)
- 10559-108A1
- 10569-108B2 (leiomyoma cell line:10964C)
- 10570-108B3 (leiomyoma cell line:15242A)
- 10571-108B4 (leiomyoma cell line:15425)
- 10572-108B5
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10724-110A4
- 10738-110B9
- 10751-110D4
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0060072 (benign neoplasm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.3e-110 | FFCP PHASE1:Hg19::chr3:132975986..132975997,-#_c39d2dd1691e0d9b7263078efdce1e19 | p1@uc003epl.2 |
| 1.3e-110 | FFCP PHASE2:Hg19::chr3:132975986..132975997,-#_c39d2dd1691e0d9b7263078efdce1e19 | p1@uc003epl.2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:152842546..152842554,+#_2963d3417c37fe76d19e6afebd5c3d16 | p@chr1:152842546..152842554, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:152842532..152842539,+#_2963d3417c37fe76d19e6afebd5c3d16 | p@chr1:152842532..152842539, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:152842546..152842554,+#_2963d3417c37fe76d19e6afebd5c3d16 | p@chr1:152842546..152842554, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:152842532..152842539,+#_2963d3417c37fe76d19e6afebd5c3d16 | p@chr1:152842532..152842539, + |
| 4.23e-89 | FFCP PHASE1:Hg19::chr3:132976005..132976010,-#_405531e637a3984b0ea72a3dc9b730f0 | p2@ENST00000505721 |
| 4.23e-89 | FFCP PHASE2:Hg19::chr3:132976005..132976010,-#_405531e637a3984b0ea72a3dc9b730f0 | p2@ENST00000505721 |
| 5.72e-89 | FFCP PHASE2:Hg19::chr2:218192886..218192899,-#_aa88f41b6018d70f6f05997fbe99bb34 | p@chr2:218192886..218192899, - |
| 5.72e-89 | FFCP PHASE1:Hg19::chr2:218192886..218192899,-#_aa88f41b6018d70f6f05997fbe99bb34 | p@chr2:218192886..218192899, - |
| 4.98e-64 | FFCP PHASE2:Hg19::chr8:42037558..42037573,-#_69a89dd59de4051d8a484d28be7e78fc | p@chr8:42037558..42037573, - |
| 4.98e-64 | FFCP PHASE1:Hg19::chr8:42037558..42037573,-#_69a89dd59de4051d8a484d28be7e78fc | p@chr8:42037558..42037573, - |
| 9.51e-64 | FFCP PHASE1:Hg19::chr3:141150971..141150978,+#_5080e994c2906e19e648cfc7f14046c8 | p60@ZBTB38 |
| 9.51e-64 | FFCP PHASE2:Hg19::chr3:141150971..141150978,+#_5080e994c2906e19e648cfc7f14046c8 | p60@ZBTB38 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:218192853..218192858,-#_a0a5c2f3f6a2c14c3cd954548533ed1f | p@chr2:218192853..218192858, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr16:77317713..77317723,+#_a0a5c2f3f6a2c14c3cd954548533ed1f | p1@CU687665 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:101742272..101742276,-#_a0a5c2f3f6a2c14c3cd954548533ed1f | p@chr11:101742272..101742276, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr11:101742272..101742276,-#_a0a5c2f3f6a2c14c3cd954548533ed1f | p@chr11:101742272..101742276, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:218192853..218192858,-#_a0a5c2f3f6a2c14c3cd954548533ed1f | p@chr2:218192853..218192858, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr16:77317713..77317723,+#_a0a5c2f3f6a2c14c3cd954548533ed1f | p1@CU687665 |
| 6.6e-50 | FFCP PHASE1:Hg19::chr1:163045452..163045464,+#_73af4443891c0f19e1b638cb9986e9ff | p@chr1:163045452..163045464, + |
| 6.6e-50 | FFCP PHASE2:Hg19::chr1:163045452..163045464,+#_73af4443891c0f19e1b638cb9986e9ff | p@chr1:163045452..163045464, + |
| 1.69e-45 | FFCP PHASE1:Hg19::chr22:44708774..44708788,-#_8345ca057945be74cb23ba97de0c2ac0 | p3@KIAA1644 |
| 1.69e-45 | FFCP PHASE2:Hg19::chr22:44708774..44708788,-#_8345ca057945be74cb23ba97de0c2ac0 | p3@KIAA1644 |
| 1.46e-41 | FFCP PHASE1:Hg19::chr2:207406777..207406786,+#_9bb6ba6118a8f7d2c4bb75ffad70da9c | p9@ADAM23 |
| 1.46e-41 | FFCP PHASE2:Hg19::chr2:207406777..207406786,+#_9bb6ba6118a8f7d2c4bb75ffad70da9c | p9@ADAM23 |
| 5.02e-41 | FFCP PHASE1:Hg19::chr13:32313732..32313747,+#_b69560c9a1beb06436ef986e70f2f955 | p1@RXFP2 |
| 5.02e-41 | FFCP PHASE2:Hg19::chr13:32313732..32313747,+#_b69560c9a1beb06436ef986e70f2f955 | p1@RXFP2 |
| 3.77e-35 | FFCP PHASE1:Hg19::chr8:42040287..42040298,-#_3e052d1d4aa660feb8a7475df39ffbb0 | p10@PLAT |
| 3.77e-35 | FFCP PHASE2:Hg19::chr8:42040287..42040298,-#_3e052d1d4aa660feb8a7475df39ffbb0 | p10@PLAT |
| 7.07e-34 | FFCP PHASE2:Hg19::chr7:12134329..12134354,-#_6720531860a971e455df9305811f3641 | p@chr7:12134329..12134354, - |
| 7.07e-34 | FFCP PHASE2:Hg19::chr2:218193183..218193196,-#_6720531860a971e455df9305811f3641 | p@chr2:218193183..218193196, - |
| 7.07e-34 | FFCP PHASE1:Hg19::chr7:12134329..12134354,-#_6720531860a971e455df9305811f3641 | p@chr7:12134329..12134354, - |
| 7.07e-34 | FFCP PHASE1:Hg19::chr2:218193183..218193196,-#_6720531860a971e455df9305811f3641 | p@chr2:218193183..218193196, - |
| 4.01e-33 | FFCP PHASE2:Hg19::chr6:86200265..86200276,+#_b43249ffef0d6ceb00ebe79be7a39b44 | p@chr6:86200265..86200276, + |
| 4.01e-33 | FFCP PHASE1:Hg19::chr6:86200265..86200276,+#_b43249ffef0d6ceb00ebe79be7a39b44 | p@chr6:86200265..86200276, + |
| 2.74e-29 | FFCP PHASE1:Hg19::chrX:7077952..7077959,+#_aaef8f291372e9d2bde3c5a8242b66ff | p18@STS |
| 2.74e-29 | FFCP PHASE2:Hg19::chrX:7077952..7077959,+#_aaef8f291372e9d2bde3c5a8242b66ff | p18@STS |
| 1.55e-27 | FFCP PHASE1:Hg19::chr6:86204236..86204247,+#_c60c2cdc147ffb4386dd17ca418dd7c7 | p@chr6:86204236..86204247, + |
| 1.55e-27 | FFCP PHASE2:Hg19::chr6:86204236..86204247,+#_c60c2cdc147ffb4386dd17ca418dd7c7 | p@chr6:86204236..86204247, + |
| 2.21e-27 | FFCP PHASE2:Hg19::chr1:198203826..198203841,+#_0125e446b10d4279ccd02a1ec99458f5 | p@chr1:198203826..198203841, + |
| 2.21e-27 | FFCP PHASE1:Hg19::chr1:198203826..198203841,+#_0125e446b10d4279ccd02a1ec99458f5 | p@chr1:198203826..198203841, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr18:71197490..71197495,-#_37861dcc5d3d22ef14130d6368183cdb | p@chr18:71197490..71197495, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr16:51670868..51670880,-#_37861dcc5d3d22ef14130d6368183cdb | p@chr16:51670868..51670880, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr11:81551043..81551054,-#_37861dcc5d3d22ef14130d6368183cdb | p@chr11:81551043..81551054, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr11:81551043..81551054,-#_37861dcc5d3d22ef14130d6368183cdb | p@chr11:81551043..81551054, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr5:14034644..14034647,-#_37861dcc5d3d22ef14130d6368183cdb | p@chr5:14034644..14034647, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr16:51670868..51670880,-#_37861dcc5d3d22ef14130d6368183cdb | p@chr16:51670868..51670880, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr18:71197490..71197495,-#_37861dcc5d3d22ef14130d6368183cdb | p@chr18:71197490..71197495, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr5:14034644..14034647,-#_37861dcc5d3d22ef14130d6368183cdb | p@chr5:14034644..14034647, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr11:102712977..102712984,-#_362a8179f88afbf67580ca68c0f0f92c | p@chr11:102712977..102712984, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr11:102712977..102712984,-#_362a8179f88afbf67580ca68c0f0f92c | p@chr11:102712977..102712984, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr7:12134356..12134370,-#_362a8179f88afbf67580ca68c0f0f92c | p@chr7:12134356..12134370, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr3:45174403..45174415,+#_362a8179f88afbf67580ca68c0f0f92c | p@chr3:45174403..45174415, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr3:132975822..132975848,-#_362a8179f88afbf67580ca68c0f0f92c | p@chr3:132975822..132975848, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:130763941..130763951,+#_362a8179f88afbf67580ca68c0f0f92c | p@chr6:130763941..130763951, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:23952305..23952310,+#_362a8179f88afbf67580ca68c0f0f92c | p@chr5:23952305..23952310, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr4:187518318..187518321,-#_362a8179f88afbf67580ca68c0f0f92c | p53@FAT1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr3:106393655..106393659,+#_362a8179f88afbf67580ca68c0f0f92c | p@chr3:106393655..106393659, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:46379338..46379343,+#_362a8179f88afbf67580ca68c0f0f92c | p13@MAST2 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr3:132975886..132975894,-#_362a8179f88afbf67580ca68c0f0f92c | p1@ENST00000504993 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr7:12134356..12134370,-#_362a8179f88afbf67580ca68c0f0f92c | p@chr7:12134356..12134370, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr3:45174403..45174415,+#_362a8179f88afbf67580ca68c0f0f92c | p@chr3:45174403..45174415, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr4:34480309..34480321,-#_362a8179f88afbf67580ca68c0f0f92c | p@chr4:34480309..34480321, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr3:132975822..132975848,-#_362a8179f88afbf67580ca68c0f0f92c | p@chr3:132975822..132975848, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:130763941..130763951,+#_362a8179f88afbf67580ca68c0f0f92c | p@chr6:130763941..130763951, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:23952305..23952310,+#_362a8179f88afbf67580ca68c0f0f92c | p@chr5:23952305..23952310, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr3:132975886..132975894,-#_362a8179f88afbf67580ca68c0f0f92c | p1@ENST00000504993 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr3:106393655..106393659,+#_362a8179f88afbf67580ca68c0f0f92c | p@chr3:106393655..106393659, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr4:187518318..187518321,-#_362a8179f88afbf67580ca68c0f0f92c | p53@FAT1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr4:34480309..34480321,-#_362a8179f88afbf67580ca68c0f0f92c | p@chr4:34480309..34480321, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:46379338..46379343,+#_362a8179f88afbf67580ca68c0f0f92c | p13@MAST2 |
| 7.64e-26 | FFCP PHASE1:Hg19::chr13:32313685..32313699,+#_a3bd1eec7b201e8cca1a3352698bdb16 | p2@RXFP2 |
| 7.64e-26 | FFCP PHASE2:Hg19::chr13:32313685..32313699,+#_a3bd1eec7b201e8cca1a3352698bdb16 | p2@RXFP2 |
| 1.26e-25 | FFCP PHASE1:Hg19::chr13:32313658..32313668,+#_f1c786646951885e68361f5773c077b4 | p3@RXFP2 |
| 1.26e-25 | FFCP PHASE2:Hg19::chr13:32313658..32313668,+#_f1c786646951885e68361f5773c077b4 | p3@RXFP2 |
| 8.64e-25 | FFCP PHASE2:Hg19::chr21:30000326..30000330,+#_7b7d6c8040ca2c1a2338df168eb96240 | p@chr21:30000326..30000330, + |
| 8.64e-25 | FFCP PHASE1:Hg19::chr21:30000326..30000330,+#_7b7d6c8040ca2c1a2338df168eb96240 | p@chr21:30000326..30000330, + |
| 1.92e-24 | FFCP PHASE2:Hg19::chr6:130761678..130761702,+#_61f8738c96ae74b4189fa67b0fee5ab1 | p1@AB385516 |
| 1.92e-24 | FFCP PHASE1:Hg19::chr6:130761678..130761702,+#_61f8738c96ae74b4189fa67b0fee5ab1 | p1@AB385516 |
| 6.91e-24 | FFCP PHASE2:Hg19::chr8:42042654..42042665,-#_43835f2f6011d728bdfaa74122a720cf | p9@PLAT |
| 6.91e-24 | FFCP PHASE1:Hg19::chr8:42042654..42042665,-#_43835f2f6011d728bdfaa74122a720cf | p9@PLAT |
| 2.53e-23 | FFCP PHASE1:Hg19::chr2:220326139..220326158,+#_93d8ba6bc2b80089b74182d6ca25b4d8 | p10@SPEG |
| 2.53e-23 | FFCP PHASE2:Hg19::chr2:220326139..220326158,+#_93d8ba6bc2b80089b74182d6ca25b4d8 | p10@SPEG |
| 3.17e-23 | FFCP PHASE2:Hg19::chr7:27219651..27219660,-#_b30c84c64e3372c14ce3b4bfe9dac14e | p4@ENST00000470747 |
| 3.17e-23 | FFCP PHASE1:Hg19::chr7:27219651..27219660,-#_b30c84c64e3372c14ce3b4bfe9dac14e | p4@ENST00000470747 |
| 3.68e-23 | FFCP PHASE1:Hg19::chr8:42033253..42033264,-#_c7d6cb5728f7c89d774dffc336731e00 | p@chr8:42033253..42033264, - |
| 3.68e-23 | FFCP PHASE2:Hg19::chr8:42033253..42033264,-#_c7d6cb5728f7c89d774dffc336731e00 | p@chr8:42033253..42033264, - |
| 4.11e-23 | FFCP PHASE2:Hg19::chr3:141151044..141151053,+#_15c365d0b6af6a2d74b31fba455f2361 | p51@ZBTB38 |
| 4.11e-23 | FFCP PHASE1:Hg19::chr3:141151044..141151053,+#_15c365d0b6af6a2d74b31fba455f2361 | p51@ZBTB38 |
| 6.42e-23 | FFCP PHASE1:Hg19::chr10:90974443..90974454,-#_6dc6ac00c80110b13c6efd9ba3d2aafd | p@chr10:90974443..90974454, - |
| 6.42e-23 | FFCP PHASE2:Hg19::chr10:90974443..90974454,-#_6dc6ac00c80110b13c6efd9ba3d2aafd | p@chr10:90974443..90974454, - |
| 1.57e-22 | FFCP PHASE2:Hg19::chr7:84349931..84349955,-#_3bf1058f07f749a4d14e0fc6579e9988 | p@chr7:84349931..84349955, - |
| 1.57e-22 | FFCP PHASE1:Hg19::chr7:84349931..84349955,-#_3bf1058f07f749a4d14e0fc6579e9988 | p@chr7:84349931..84349955, - |
| 2.79e-22 | FFCP PHASE1:Hg19::chr9:106854088..106854104,-#_380a27b7b6ee26977f52dea9ab46b27d | p@chr9:106854088..106854104, - |
| 2.79e-22 | FFCP PHASE2:Hg19::chr9:106854088..106854104,-#_380a27b7b6ee26977f52dea9ab46b27d | p@chr9:106854088..106854104, - |
| 7.12e-22 | FFCP PHASE2:Hg19::chr3:98518094..98518105,-#_ea955d15afe396e5533761aeaf433edb | p39@DCBLD2 |
| 7.12e-22 | FFCP PHASE1:Hg19::chr10:90988088..90988122,-#_ea955d15afe396e5533761aeaf433edb | p@chr10:90988088..90988122, - |
| 7.12e-22 | FFCP PHASE2:Hg19::chr10:90988088..90988122,-#_ea955d15afe396e5533761aeaf433edb | p@chr10:90988088..90988122, - |
| 7.12e-22 | FFCP PHASE1:Hg19::chr3:98518094..98518105,-#_ea955d15afe396e5533761aeaf433edb | p39@DCBLD2 |
