CL:0002610: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=raphe nuclei neuron | |name=raphe nuclei neuron | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-03-06T07:42:06Z | |obo_creation_date=2011-03-06T07:42:06Z | ||
|part_of=UBERON:0004684 | |part_of=UBERON:0004684 | ||
Latest revision as of 16:45, 12 September 2014
| Name: | raphe nuclei neuron |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A neuron of the raphe nuclei." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-06T07:42:06Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000117(CNS neuron (sensu Vertebrata)) |
|---|---|
| part_of: | UBERON:0004684(raphe nuclei) |
Children
| derives from: | FF:0000205 (mouse raphe nuclei neuron sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11645-122D7 (Mouse Neurons - raphe, donor3)
- 11722-123D3 (Mouse Neurons - raphe, donor1)
- 11740-123F3 (Mouse Neurons - raphe, donor2)
Mouse (Mus musculus)
- 11645-122D7 (Mouse Neurons - raphe, donor3)
- 11722-123D3 (Mouse Neurons - raphe, donor1)
- 11740-123F3 (Mouse Neurons - raphe, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002610 (raphe nuclei neuron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:67832482..67832485,+#_745d4d03bbf96929ad5ede3a3f8e6ebc | p@chr9:67832482..67832485, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:67832482..67832485,+#_745d4d03bbf96929ad5ede3a3f8e6ebc | p@chr9:67832482..67832485, + |
| 2.21e-65 | FFCP PHASE1:Mm9::chr11:6372235..6372242,-#_ee5ae8b08e7340fcb149ae2c6cb4a4f9 | p1@ENSMUST00000175144 |
| 2.21e-65 | FFCP PHASE2:Mm9::chr11:6372235..6372242,-#_ee5ae8b08e7340fcb149ae2c6cb4a4f9 | p1@ENSMUST00000175144 |
| 3.65e-65 | FFCP PHASE2:Mm9::chr6:77194015..77194026,+#_28d85c1a78011c67ab425ef3f7b46494 | p@chr6:77194015..77194026, + |
| 3.65e-65 | FFCP PHASE1:Mm9::chr6:77194015..77194026,+#_28d85c1a78011c67ab425ef3f7b46494 | p@chr6:77194015..77194026, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:24918331..24918345,+#_36c47b69e467e72d6185b56953e365ae | p@chr2:24918331..24918345, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:24918331..24918345,+#_36c47b69e467e72d6185b56953e365ae | p@chr2:24918331..24918345, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr3:88548978..88548990,-#_f7c90e8fb9beda686093bdd6751ea891 | p@chr3:88548978..88548990, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr3:88548978..88548990,-#_f7c90e8fb9beda686093bdd6751ea891 | p@chr3:88548978..88548990, - |
| 7.35e-53 | FFCP PHASE1:Mm9::chr10:10408741..10408754,-#_23ba08c054ea8bd3b015f491f4866e3f | p@chr10:10408741..10408754, - |
| 7.35e-53 | FFCP PHASE2:Mm9::chr10:10408741..10408754,-#_23ba08c054ea8bd3b015f491f4866e3f | p@chr10:10408741..10408754, - |
| 1.1e-52 | FFCP PHASE2:Mm9::chr3:126639582..126639596,-#_7b3fdc68e4378122b173204e6d074662 | p@chr3:126639582..126639596, - |
| 1.1e-52 | FFCP PHASE1:Mm9::chr3:126639582..126639596,-#_7b3fdc68e4378122b173204e6d074662 | p@chr3:126639582..126639596, - |
| 1.65e-52 | FFCP PHASE2:Mm9::chr4:57254065..57254072,-#_0970218cb67e1a48c3962c242fba1124 | p@chr4:57254065..57254072, - |
| 1.65e-52 | FFCP PHASE1:Mm9::chr12:85023868..85023879,+#_0970218cb67e1a48c3962c242fba1124 | p@chr12:85023868..85023879, + |
| 1.65e-52 | FFCP PHASE1:Mm9::chr4:57254065..57254072,-#_0970218cb67e1a48c3962c242fba1124 | p@chr4:57254065..57254072, - |
| 1.65e-52 | FFCP PHASE2:Mm9::chr12:85023868..85023879,+#_0970218cb67e1a48c3962c242fba1124 | p@chr12:85023868..85023879, + |
| 2.47e-52 | FFCP PHASE1:Mm9::chr1:66486342..66486351,+#_5be8f08f0c8cfd6c46d538520cf2d7bf | p@chr1:66486342..66486351, + |
| 2.47e-52 | FFCP PHASE1:Mm9::chr10:6473752..6473760,-#_5be8f08f0c8cfd6c46d538520cf2d7bf | p@chr10:6473752..6473760, - |
| 2.47e-52 | FFCP PHASE2:Mm9::chr10:6473752..6473760,-#_5be8f08f0c8cfd6c46d538520cf2d7bf | p@chr10:6473752..6473760, - |
| 2.47e-52 | FFCP PHASE2:Mm9::chr7:67121440..67121451,-#_5be8f08f0c8cfd6c46d538520cf2d7bf | p@chr7:67121440..67121451, - |
| 2.47e-52 | FFCP PHASE1:Mm9::chr7:67121440..67121451,-#_5be8f08f0c8cfd6c46d538520cf2d7bf | p@chr7:67121440..67121451, - |
| 2.47e-52 | FFCP PHASE2:Mm9::chr1:66486342..66486351,+#_5be8f08f0c8cfd6c46d538520cf2d7bf | p@chr1:66486342..66486351, + |
| 3.69e-52 | FFCP PHASE1:Mm9::chr4:57253877..57253880,-#_049b610fd937cce64d31be1bacdf2e79 | p@chr4:57253877..57253880, - |
| 3.69e-52 | FFCP PHASE2:Mm9::chr4:57253865..57253876,-#_049b610fd937cce64d31be1bacdf2e79 | p@chr4:57253865..57253876, - |
| 3.69e-52 | FFCP PHASE2:Mm9::chr4:57253877..57253880,-#_049b610fd937cce64d31be1bacdf2e79 | p@chr4:57253877..57253880, - |
| 3.69e-52 | FFCP PHASE1:Mm9::chr4:57253865..57253876,-#_049b610fd937cce64d31be1bacdf2e79 | p@chr4:57253865..57253876, - |
| 5.51e-52 | FFCP PHASE2:Mm9::chr14:66893581..66893589,-#_d1008a3f66e7bee8065e865b4cb4f373 | p@chr14:66893581..66893589, - |
| 5.51e-52 | FFCP PHASE1:Mm9::chr14:66893581..66893589,-#_d1008a3f66e7bee8065e865b4cb4f373 | p@chr14:66893581..66893589, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr4:134073503..134073512,-#_10c306c75c626ee37f77043025bec096 | p@chr4:134073503..134073512, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr1:66743268..66743289,+#_10c306c75c626ee37f77043025bec096 | p@chr1:66743268..66743289, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr4:134073503..134073512,-#_10c306c75c626ee37f77043025bec096 | p@chr4:134073503..134073512, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr1:66743268..66743289,+#_10c306c75c626ee37f77043025bec096 | p@chr1:66743268..66743289, + |
| 2.33e-44 | FFCP PHASE1:Mm9::chr4:57447275..57447280,+#_6a662259c2f54acb8bd0d8033fa2de07 | p21@Palm2 |
| 2.33e-44 | FFCP PHASE1:Mm9::chr8:67087900..67087910,-#_6a662259c2f54acb8bd0d8033fa2de07 | p@chr8:67087900..67087910, - |
| 2.33e-44 | FFCP PHASE2:Mm9::chr8:67087900..67087910,-#_6a662259c2f54acb8bd0d8033fa2de07 | p@chr8:67087900..67087910, - |
| 2.33e-44 | FFCP PHASE2:Mm9::chr4:57447275..57447280,+#_6a662259c2f54acb8bd0d8033fa2de07 | p21@Palm2 |
| 3.27e-44 | FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_b2a9e0a07ab4acf6525bfdf221a34b3d | p@chr10:111706834..111706844, + |
| 3.27e-44 | FFCP PHASE2:Mm9::chr9:46721556..46721563,+#_b2a9e0a07ab4acf6525bfdf221a34b3d | p5@2900052N01Rik |
| 3.27e-44 | FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_b2a9e0a07ab4acf6525bfdf221a34b3d | p@chr10:111706834..111706844, + |
| 3.27e-44 | FFCP PHASE1:Mm9::chr9:46721556..46721563,+#_b2a9e0a07ab4acf6525bfdf221a34b3d | p5@2900052N01Rik |
| 4.58e-44 | FFCP PHASE2:Mm9::chr10:6473722..6473734,-#_35a7b39c052d2edc241986c835cf5939 | p@chr10:6473722..6473734, - |
| 4.58e-44 | FFCP PHASE1:Mm9::chr10:6473722..6473734,-#_35a7b39c052d2edc241986c835cf5939 | p@chr10:6473722..6473734, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr9:14438679..14438684,-#_82cf82ac089f5eeec4b9e28a26b12612 | p@chr9:14438679..14438684, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr9:14438679..14438684,-#_82cf82ac089f5eeec4b9e28a26b12612 | p@chr9:14438679..14438684, - |
| 1.75e-43 | FFCP PHASE2:Mm9::chr4:147732971..147732980,-#_24510cf9e8468464f14064f649d6eb59 | p@chr4:147732971..147732980, - |
| 1.75e-43 | FFCP PHASE1:Mm9::chr4:147732971..147732980,-#_24510cf9e8468464f14064f649d6eb59 | p@chr4:147732971..147732980, - |
| 2.45e-43 | FFCP PHASE1:Mm9::chr16:43072307..43072322,+#_c9ee5fb25cca9e5355270ef9129ceb5b | p@chr16:43072307..43072322, + |
| 2.45e-43 | FFCP PHASE2:Mm9::chr16:43072307..43072322,+#_c9ee5fb25cca9e5355270ef9129ceb5b | p@chr16:43072307..43072322, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr10:6482651..6482660,-#_f58d1fa3a0d60dd5c7019bc99ce94259 | p@chr10:6482651..6482660, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr10:6482651..6482660,-#_f58d1fa3a0d60dd5c7019bc99ce94259 | p@chr10:6482651..6482660, - |
| 2.66e-39 | FFCP PHASE2:Mm9::chr14:13448641..13448660,-#_c9b19df4cfdd956fc5f2b46114942b20 | p@chr14:13448641..13448660, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr2:103659822..103659827,-#_c9b19df4cfdd956fc5f2b46114942b20 | p1@ENSMUST00000118421, p1@ENSMUST00000167989 |
| 2.66e-39 | FFCP PHASE2:Mm9::chr2:103659822..103659827,-#_c9b19df4cfdd956fc5f2b46114942b20 | p1@ENSMUST00000118421, p1@ENSMUST00000167989 |
| 2.66e-39 | FFCP PHASE1:Mm9::chr12:110796949..110796955,+#_c9b19df4cfdd956fc5f2b46114942b20 | p@chr12:110796949..110796955, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr14:13448641..13448660,-#_c9b19df4cfdd956fc5f2b46114942b20 | p@chr14:13448641..13448660, - |
| 2.66e-39 | FFCP PHASE2:Mm9::chr12:110796949..110796955,+#_c9b19df4cfdd956fc5f2b46114942b20 | p@chr12:110796949..110796955, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr2:90730407..90730420,+#_4dc0cd5a7f66cf180118bd55c2d5fa9b | p@chr2:90730407..90730420, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr5:135039704..135039724,-#_4dc0cd5a7f66cf180118bd55c2d5fa9b | p@chr5:135039704..135039724, - |
| 4.15e-39 | FFCP PHASE1:Mm9::chr16:43072335..43072346,+#_4dc0cd5a7f66cf180118bd55c2d5fa9b | p@chr16:43072335..43072346, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr2:90730407..90730420,+#_4dc0cd5a7f66cf180118bd55c2d5fa9b | p@chr2:90730407..90730420, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr16:43072335..43072346,+#_4dc0cd5a7f66cf180118bd55c2d5fa9b | p@chr16:43072335..43072346, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_4dc0cd5a7f66cf180118bd55c2d5fa9b | p19@Rgs8 |
| 4.15e-39 | FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_4dc0cd5a7f66cf180118bd55c2d5fa9b | p19@Rgs8 |
| 4.15e-39 | FFCP PHASE2:Mm9::chr5:135039704..135039724,-#_4dc0cd5a7f66cf180118bd55c2d5fa9b | p@chr5:135039704..135039724, - |
| 1.17e-38 | FFCP PHASE1:Mm9::chr10:77867856..77867866,-#_89ba0b848040a3e0d1a27ecca4a01067 | p@chr10:77867856..77867866, - |
| 1.17e-38 | FFCP PHASE2:Mm9::chr7:6659121..6659133,-#_89ba0b848040a3e0d1a27ecca4a01067 | p@chr7:6659121..6659133, - |
| 1.17e-38 | FFCP PHASE2:Mm9::chr16:89818560..89818572,-#_89ba0b848040a3e0d1a27ecca4a01067 | p17@Tiam1 |
| 1.17e-38 | FFCP PHASE1:Mm9::chr16:89818560..89818572,-#_89ba0b848040a3e0d1a27ecca4a01067 | p17@Tiam1 |
| 1.17e-38 | FFCP PHASE1:Mm9::chr7:6659121..6659133,-#_89ba0b848040a3e0d1a27ecca4a01067 | p@chr7:6659121..6659133, - |
| 1.17e-38 | FFCP PHASE2:Mm9::chr10:77867856..77867866,-#_89ba0b848040a3e0d1a27ecca4a01067 | p@chr10:77867856..77867866, - |
| 2.09e-38 | FFCP PHASE1:Mm9::chr6:48398099..48398121,+#_e3e6dd22b8ce667f347eb8d49a6a0312 | p2@LOC100505089, p2@Sspo |
| 2.09e-38 | FFCP PHASE2:Mm9::chr6:48398099..48398121,+#_e3e6dd22b8ce667f347eb8d49a6a0312 | p2@LOC100505089, p2@Sspo |
| 8.86e-38 | FFCP PHASE1:Mm9::chr4:47004694..47004703,-#_e24638caa7d19d5c81fafd5c1fe23aec | p8@Gabbr2 |
| 8.86e-38 | FFCP PHASE2:Mm9::chr4:47004694..47004703,-#_e24638caa7d19d5c81fafd5c1fe23aec | p8@Gabbr2 |
| 1.18e-37 | FFCP PHASE2:Mm9::chr2:177853871..177853888,+#_afca7927ae4ecd4501eb1be679dc6020 | p18@Phactr3 |
| 1.18e-37 | FFCP PHASE1:Mm9::chr2:177853871..177853888,+#_afca7927ae4ecd4501eb1be679dc6020 | p18@Phactr3 |
| 2.1e-37 | FFCP PHASE2:Mm9::chr4:147588847..147588858,-#_e2eb54b7b0e4828eeedc5e89344e7632 | p@chr4:147588847..147588858, - |
| 2.1e-37 | FFCP PHASE1:Mm9::chr4:147588847..147588858,-#_e2eb54b7b0e4828eeedc5e89344e7632 | p@chr4:147588847..147588858, - |
| 3.72e-37 | FFCP PHASE2:Mm9::chr2:70439780..70439819,+#_d31bcdeef18125ca3b8586437916ef26 | p@chr2:70439780..70439819, + |
| 3.72e-37 | FFCP PHASE1:Mm9::chr2:70439780..70439819,+#_d31bcdeef18125ca3b8586437916ef26 | p@chr2:70439780..70439819, + |
| 3.67e-34 | FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_48f77144d9ae96cadc84a6685db45e7a | p@chr19:40804786..40804795, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chr11:68505408..68505413,+#_48f77144d9ae96cadc84a6685db45e7a | p8@Myh10 |
| 3.67e-34 | FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_48f77144d9ae96cadc84a6685db45e7a | p@chr19:40804786..40804795, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr11:68505408..68505413,+#_48f77144d9ae96cadc84a6685db45e7a | p8@Myh10 |
| 4.74e-34 | FFCP PHASE1:Mm9::chr5:31441248..31441260,-#_169dec36b6da20ae17adc6e552dd1020 | p1@Ucn |
| 4.74e-34 | FFCP PHASE2:Mm9::chr5:31441248..31441260,-#_169dec36b6da20ae17adc6e552dd1020 | p1@Ucn |
| 4.74e-34 | FFCP PHASE1:Mm9::chr2:102621960..102621969,+#_169dec36b6da20ae17adc6e552dd1020 | p@chr2:102621960..102621969, + |
| 4.74e-34 | FFCP PHASE2:Mm9::chr2:102621960..102621969,+#_169dec36b6da20ae17adc6e552dd1020 | p@chr2:102621960..102621969, + |
| 1.31e-33 | FFCP PHASE2:Mm9::chr14:31438329..31438344,-#_a36545adf9d760f8747f6d6bf57d6800 | p@chr14:31438329..31438344, - |
| 1.31e-33 | FFCP PHASE2:Mm9::chr15:59373755..59373758,-#_a36545adf9d760f8747f6d6bf57d6800 | p@chr15:59373755..59373758, - |
| 1.31e-33 | FFCP PHASE2:Mm9::chr7:116903722..116903727,-#_a36545adf9d760f8747f6d6bf57d6800 | p@chr7:116903722..116903727, - |
| 1.31e-33 | FFCP PHASE1:Mm9::chr15:59373755..59373758,-#_a36545adf9d760f8747f6d6bf57d6800 | p@chr15:59373755..59373758, - |
| 1.31e-33 | FFCP PHASE1:Mm9::chr14:31438329..31438344,-#_a36545adf9d760f8747f6d6bf57d6800 | p@chr14:31438329..31438344, - |
| 1.31e-33 | FFCP PHASE1:Mm9::chr7:116903722..116903727,-#_a36545adf9d760f8747f6d6bf57d6800 | p@chr7:116903722..116903727, - |
| 2.18e-33 | FFCP PHASE2:Mm9::chr14:54813640..54813649,+#_2d541b7f0acd11533e86cb416ff8c589 | p@chr14:54813640..54813649, + |
| 2.18e-33 | FFCP PHASE1:Mm9::chr14:54813640..54813649,+#_2d541b7f0acd11533e86cb416ff8c589 | p@chr14:54813640..54813649, + |
| 7.68e-33 | FFCP PHASE2:Mm9::chr19:55969998..55970001,+#_03d672d980fa98567e158d0f834ed70b | p40@Tcf7l2 |
| 7.68e-33 | FFCP PHASE1:Mm9::chr19:55969998..55970001,+#_03d672d980fa98567e158d0f834ed70b | p40@Tcf7l2 |
