CL:0002588: Difference between revisions
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|located_in= | |located_in= | ||
|name=smooth muscle cell of the umbilical vein | |name=smooth muscle cell of the umbilical vein | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-03-06T05:00:51Z | |obo_creation_date=2011-03-06T05:00:51Z | ||
|part_of=UBERON:0002066 | |part_of=UBERON:0002066 | ||
Latest revision as of 16:45, 12 September 2014
| Name: | smooth muscle cell of the umbilical vein |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A smooth muscle cell of the umbilical vein." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-06T05:00:51Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000359(vascular associated smooth muscle cell) |
|---|---|
| part_of: | UBERON:0002066(umbilical vein) |
Children
| derives from: | FF:0000177 (human smooth muscle cell of umbilical vein sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
- 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
- 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)
Mouse (Mus musculus)
- 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
- 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
- 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002588 (smooth muscle cell of the umbilical vein), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:54543635..54543636,+#_6e8ecf5e79d820a9c32f1781a62925be | p@chr17:54543635..54543636, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:54543635..54543636,+#_6e8ecf5e79d820a9c32f1781a62925be | p@chr17:54543635..54543636, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:54543642..54543647,+#_6e8ecf5e79d820a9c32f1781a62925be | p@chr17:54543642..54543647, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:54543642..54543647,+#_6e8ecf5e79d820a9c32f1781a62925be | p@chr17:54543642..54543647, + |
| 3.96e-66 | FFCP PHASE2:Hg19::chr15:22545370..22545372,+#_04163981eabbb2b3c12fe3954f4f6c9c | p@chr15:22545370..22545372, + |
| 3.96e-66 | FFCP PHASE1:Hg19::chr15:22545370..22545372,+#_04163981eabbb2b3c12fe3954f4f6c9c | p@chr15:22545370..22545372, + |
| 3.58e-57 | FFCP PHASE2:Hg19::chr3:154801312..154801336,+#_087b34bccc75df9cdc3229a887b92689 | p29@MME |
| 3.58e-57 | FFCP PHASE1:Hg19::chr3:154801312..154801336,+#_087b34bccc75df9cdc3229a887b92689 | p29@MME |
| 2.74e-50 | FFCP PHASE2:Hg19::chr16:4181309..4181310,-#_8999638bdaebc785bb5287d7046ecb48 | p@chr16:4181309..4181310, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr16:4181309..4181310,-#_8999638bdaebc785bb5287d7046ecb48 | p@chr16:4181309..4181310, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr19:8567177..8567179,+#_855ee9936051aa0ecb31c26eead8de9d | p@chr19:8567177..8567179, + |
| 3.61e-34 | FFCP PHASE1:Hg19::chr19:8567177..8567179,+#_855ee9936051aa0ecb31c26eead8de9d | p@chr19:8567177..8567179, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr21:22496435..22496437,-#_3fb1b4901f70797dd89ee1ee16a8b77b | p@chr21:22496435..22496437, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr21:22496435..22496437,-#_3fb1b4901f70797dd89ee1ee16a8b77b | p@chr21:22496435..22496437, - |
| 5.2e-30 | FFCP PHASE1:Hg19::chr12:44152515..44152534,-#_cf050f19aa2944a97d8114f390b0c2fc | p2@PUS7L |
| 5.2e-30 | FFCP PHASE2:Hg19::chr12:44152515..44152534,-#_cf050f19aa2944a97d8114f390b0c2fc | p2@PUS7L |
| 8.05e-30 | FFCP PHASE1:Hg19::chr3:154741907..154741918,+#_0a668c24fcf2e45cc2a3ad0a089e8158 | p25@MME |
| 8.05e-30 | FFCP PHASE2:Hg19::chr3:154741907..154741918,+#_0a668c24fcf2e45cc2a3ad0a089e8158 | p25@MME |
| 6.01e-22 | FFCP PHASE2:Hg19::chr8:5515544..5515548,+#_9d43f806f612f76783ae31830484a693 | p@chr8:5515544..5515548, + |
| 6.01e-22 | FFCP PHASE1:Hg19::chr8:5515544..5515548,+#_9d43f806f612f76783ae31830484a693 | p@chr8:5515544..5515548, + |
| 2.08e-21 | FFCP PHASE2:Hg19::chr3:154797315..154797322,+#_d49b3942b82213f8fa149babb1653816 | p24@MME |
| 2.08e-21 | FFCP PHASE1:Hg19::chr3:154797315..154797322,+#_d49b3942b82213f8fa149babb1653816 | p24@MME |
| 3.81e-21 | FFCP PHASE1:Hg19::chr12:65928345..65928348,-#_ece5968f88125ec6be5a6c56579f64b5 | p@chr12:65928345..65928348, - |
| 3.81e-21 | FFCP PHASE2:Hg19::chr12:65928345..65928348,-#_ece5968f88125ec6be5a6c56579f64b5 | p@chr12:65928345..65928348, - |
| 4.66e-21 | FFCP PHASE2:Hg19::chr3:162256416..162256425,-#_943ab0485bb50f77a310a42ac85bcfcc | p@chr3:162256416..162256425, - |
| 4.66e-21 | FFCP PHASE1:Hg19::chr3:162256416..162256425,-#_943ab0485bb50f77a310a42ac85bcfcc | p@chr3:162256416..162256425, - |
| 3.67e-20 | FFCP PHASE2:Hg19::chr3:112320522..112320525,-#_38ccb9398865de78b31093a9bad5f308 | p@chr3:112320522..112320525, - |
| 3.67e-20 | FFCP PHASE1:Hg19::chr3:112320522..112320525,-#_38ccb9398865de78b31093a9bad5f308 | p@chr3:112320522..112320525, - |
| 8.54e-20 | FFCP PHASE2:Hg19::chr6:6536213..6536216,+#_eafe0a9de5769332e81b634c8d9517ed | p@chr6:6536213..6536216, + |
| 8.54e-20 | FFCP PHASE1:Hg19::chr6:6536213..6536216,+#_eafe0a9de5769332e81b634c8d9517ed | p@chr6:6536213..6536216, + |
| 6.48e-18 | FFCP PHASE1:Hg19::chr15:71624452..71624460,-#_ca8c643338d696a0b0539cd039323133 | p@chr15:71624452..71624460, - |
| 6.48e-18 | FFCP PHASE2:Hg19::chr8:57390832..57390833,-#_ca8c643338d696a0b0539cd039323133 | p2@SEPT10P1 |
| 6.48e-18 | FFCP PHASE1:Hg19::chr8:57390832..57390833,-#_ca8c643338d696a0b0539cd039323133 | p2@SEPT10P1 |
| 6.48e-18 | FFCP PHASE2:Hg19::chr15:71624452..71624460,-#_ca8c643338d696a0b0539cd039323133 | p@chr15:71624452..71624460, - |
| 6.23e-17 | FFCP PHASE1:Hg19::chr17:43685905..43685910,+#_c88541c54a44cd810d3404bb23c46638 | p1@RPS26P8 |
| 6.23e-17 | FFCP PHASE2:Hg19::chr17:43685905..43685910,+#_c88541c54a44cd810d3404bb23c46638 | p1@RPS26P8 |
| 7.02e-17 | FFCP PHASE2:Hg19::chr18:28622894..28622905,-#_42b4536e6dabf08da27a1140ffd87369 | p7@DSC3 |
| 7.02e-17 | FFCP PHASE1:Hg19::chr18:28622894..28622905,-#_42b4536e6dabf08da27a1140ffd87369 | p7@DSC3 |
| 6.98e-16 | FFCP PHASE2:Hg19::chr18:28621487..28621504,+#_9ae8f3c71322662dd59bd2d04198c87c | p@chr18:28621487..28621504, + |
| 6.98e-16 | FFCP PHASE1:Hg19::chr18:28621487..28621504,+#_9ae8f3c71322662dd59bd2d04198c87c | p@chr18:28621487..28621504, + |
| 1.54e-15 | FFCP PHASE2:Hg19::chr4:174429652..174429665,+#_507adf603296166e65f946928bf11dfb | p@chr4:174429652..174429665, + |
| 1.54e-15 | FFCP PHASE1:Hg19::chr4:174429652..174429665,+#_507adf603296166e65f946928bf11dfb | p@chr4:174429652..174429665, + |
| 1.67e-15 | FFCP PHASE2:Hg19::chr2:95714054..95714058,+#_c14ccf98fb5ab0d9bc5ffa7be514a2cb | p@chr2:95714054..95714058, + |
| 1.67e-15 | FFCP PHASE1:Hg19::chr2:95714054..95714058,+#_c14ccf98fb5ab0d9bc5ffa7be514a2cb | p@chr2:95714054..95714058, + |
| 1.79e-15 | FFCP PHASE2:Hg19::chr4:174429255..174429289,+#_ce47688b0335142f2673d96ec0608b40 | p@chr4:174429255..174429289, + |
| 1.79e-15 | FFCP PHASE1:Hg19::chr4:174429255..174429289,+#_ce47688b0335142f2673d96ec0608b40 | p@chr4:174429255..174429289, + |
| 2.37e-15 | FFCP PHASE2:Hg19::chr1:154378546..154378548,+#_5a4709728609379057353e48f3d2fa12 | p@chr1:154378546..154378548, + |
| 2.37e-15 | FFCP PHASE1:Hg19::chr1:154378546..154378548,+#_5a4709728609379057353e48f3d2fa12 | p@chr1:154378546..154378548, + |
| 6.82e-15 | FFCP PHASE2:Hg19::chr3:124829277..124829294,-#_7e27eb1f50af80836e0f425a3584eaeb | p10@SLC12A8 |
| 6.82e-15 | FFCP PHASE1:Hg19::chr3:124829277..124829294,-#_7e27eb1f50af80836e0f425a3584eaeb | p10@SLC12A8 |
| 8.43e-15 | FFCP PHASE2:Hg19::chr3:154797300..154797313,+#_a33e6b0d59a3fd7de71a35c01a25aaf6 | p21@MME |
| 8.43e-15 | FFCP PHASE1:Hg19::chr3:154797300..154797313,+#_a33e6b0d59a3fd7de71a35c01a25aaf6 | p21@MME |
| 1.2e-14 | FFCP PHASE2:Hg19::chr19:633607..633619,-#_9afc8a60014db010b76c20a1f9f1e987 | p3@POLRMT |
| 1.2e-14 | FFCP PHASE1:Hg19::chr19:633607..633619,-#_9afc8a60014db010b76c20a1f9f1e987 | p3@POLRMT |
| 2.36e-14 | FFCP PHASE2:Hg19::chr2:198629457..198629461,+#_1a3fc0234f46ddd7dde882601e9c862c | p@chr2:198629457..198629461, + |
| 2.36e-14 | FFCP PHASE1:Hg19::chr2:198629457..198629461,+#_1a3fc0234f46ddd7dde882601e9c862c | p@chr2:198629457..198629461, + |
| 3.09e-14 | FFCP PHASE1:Hg19::chr11:113945540..113945542,-#_3f0e45529ef3d4f35fdf5566b404a545 | p@chr11:113945540..113945542, - |
| 3.09e-14 | FFCP PHASE2:Hg19::chr11:113945540..113945542,-#_3f0e45529ef3d4f35fdf5566b404a545 | p@chr11:113945540..113945542, - |
| 3.74e-14 | FFCP PHASE1:Hg19::chr12:26783639..26783652,-#_6dc34b1d82fba70603d0d62d19cdd548 | p9@ITPR2 |
| 3.74e-14 | FFCP PHASE2:Hg19::chr12:26783639..26783652,-#_6dc34b1d82fba70603d0d62d19cdd548 | p9@ITPR2 |
| 5.28e-14 | FFCP PHASE1:Hg19::chr12:54362447..54362462,-#_86f5ae84b62d76bb22085fa7c383d993 | p1@HOTAIR |
| 5.28e-14 | FFCP PHASE2:Hg19::chr12:54362447..54362462,-#_86f5ae84b62d76bb22085fa7c383d993 | p1@HOTAIR |
| 1.98e-13 | FFCP PHASE2:Hg19::chr15:66284416..66284418,-#_6fed2278bfa2b62bdc3d5e41a0f1da37 | p@chr15:66284416..66284418, - |
| 1.98e-13 | FFCP PHASE1:Hg19::chr15:66284416..66284418,-#_6fed2278bfa2b62bdc3d5e41a0f1da37 | p@chr15:66284416..66284418, - |
| 2.15e-13 | FFCP PHASE2:Hg19::chr3:154801537..154801556,+#_1d0b860a7c439df7435b0924f793d1b5 | p17@MME |
| 2.15e-13 | FFCP PHASE1:Hg19::chr3:154801537..154801556,+#_1d0b860a7c439df7435b0924f793d1b5 | p17@MME |
| 5.56e-13 | FFCP PHASE1:Hg19::chr12:26783618..26783634,-#_b8562bb9ae7086f0b2376d0d138aea68 | p8@ITPR2 |
| 5.56e-13 | FFCP PHASE2:Hg19::chr12:26783618..26783634,-#_b8562bb9ae7086f0b2376d0d138aea68 | p8@ITPR2 |
| 6.32e-13 | FFCP PHASE2:Hg19::chr17:59147214..59147221,+#_3ec798ec73614f23c1384c1640ee79a2 | p1@ENST00000437246 |
| 6.32e-13 | FFCP PHASE1:Hg19::chr17:59147214..59147221,+#_3ec798ec73614f23c1384c1640ee79a2 | p1@ENST00000437246 |
| 7.54e-13 | FFCP PHASE2:Hg19::chr3:154899644..154899672,+#_a3fd2d1705892904231d3f88a3409fc7 | p@chr3:154899644..154899672, + |
| 7.54e-13 | FFCP PHASE1:Hg19::chr3:154899644..154899672,+#_a3fd2d1705892904231d3f88a3409fc7 | p@chr3:154899644..154899672, + |
| 8.03e-13 | FFCP PHASE2:Hg19::chrX:138802915..138802934,-#_1597e8a5ca4f75f84fa9708c10d59f58 | p@chrX:138802915..138802934, - |
| 8.03e-13 | FFCP PHASE1:Hg19::chrX:138802915..138802934,-#_1597e8a5ca4f75f84fa9708c10d59f58 | p@chrX:138802915..138802934, - |
| 9.55e-13 | FFCP PHASE2:Hg19::chr12:54384370..54384382,+#_a43ea0beb6c442b71e4ceeb47db32efe | p5@HOXC6 |
| 9.55e-13 | FFCP PHASE1:Hg19::chr12:54384370..54384382,+#_a43ea0beb6c442b71e4ceeb47db32efe | p5@HOXC6 |
| 1.22e-12 | FFCP PHASE2:Hg19::chr3:113603761..113603770,+#_9d10562ecd00647ab40abb74d0b7b7b9 | p1@ENST00000478867 |
| 1.22e-12 | FFCP PHASE1:Hg19::chr3:113603761..113603770,+#_9d10562ecd00647ab40abb74d0b7b7b9 | p1@ENST00000478867 |
| 1.36e-12 | FFCP PHASE1:Hg19::chr12:54402694..54402705,+#_e92680032f4d1aa225290f9015a6154d | p5@HOXC8 |
| 1.36e-12 | FFCP PHASE2:Hg19::chr12:54402694..54402705,+#_e92680032f4d1aa225290f9015a6154d | p5@HOXC8 |
| 1.52e-12 | FFCP PHASE2:Hg19::chr11:9597049..9597068,+#_3471152fdcf656dd28a5cef291cd70ca | p13@WEE1 |
| 1.52e-12 | FFCP PHASE1:Hg19::chr11:9597049..9597068,+#_3471152fdcf656dd28a5cef291cd70ca | p13@WEE1 |
| 2.16e-12 | FFCP PHASE2:Hg19::chr7:23520253..23520276,+#_a8d5f0ac9fa3868b3acddb0c9007812f | p1@ENST00000428259 |
| 2.16e-12 | FFCP PHASE1:Hg19::chr7:23520253..23520276,+#_a8d5f0ac9fa3868b3acddb0c9007812f | p1@ENST00000428259 |
| 2.59e-12 | FFCP PHASE1:Hg19::chr12:54379066..54379073,+#_75b6a820c2a56089ca479e810e701663 | p11@HOXC10 |
| 2.59e-12 | FFCP PHASE2:Hg19::chr12:54379066..54379073,+#_75b6a820c2a56089ca479e810e701663 | p11@HOXC10 |
| 2.62e-12 | FFCP PHASE1:Hg19::chr2:91777916..91777918,+#_b1353b286c44c5e699b3b838c492c595 | p1@ENST00000443031 |
| 2.62e-12 | FFCP PHASE2:Hg19::chr2:91777916..91777918,+#_b1353b286c44c5e699b3b838c492c595 | p1@ENST00000443031 |
| 3.24e-12 | FFCP PHASE2:Hg19::chr8:98900237..98900248,+#_375f929e1b5fdb63abbb37f9115a1793 | p8@MATN2 |
| 3.24e-12 | FFCP PHASE1:Hg19::chr8:98900237..98900248,+#_375f929e1b5fdb63abbb37f9115a1793 | p8@MATN2 |
| 3.62e-12 | FFCP PHASE1:Hg19::chr12:54361138..54361164,-#_7d4009a86af60e79db2b98dbfec81d70 | p4@HOTAIR |
| 3.62e-12 | FFCP PHASE2:Hg19::chr12:54361138..54361164,-#_7d4009a86af60e79db2b98dbfec81d70 | p4@HOTAIR |
| 4.43e-12 | FFCP PHASE2:Hg19::chr13:75941109..75941132,-#_f462fe5bee45a7505f35d367f90a5a6a | p@chr13:75941109..75941132, - |
| 4.43e-12 | FFCP PHASE1:Hg19::chr13:75941109..75941132,-#_f462fe5bee45a7505f35d367f90a5a6a | p@chr13:75941109..75941132, - |
| 1.82e-11 | FFCP PHASE2:Hg19::chr15:67524744..67524745,+#_cc5265f92f3a632162d650639464566f | p1@ENST00000497294 |
| 1.82e-11 | FFCP PHASE2:Hg19::chr8:68318708..68318725,+#_cc5265f92f3a632162d650639464566f | p1@ENST00000483964 |
| 1.82e-11 | FFCP PHASE1:Hg19::chr15:67524744..67524745,+#_cc5265f92f3a632162d650639464566f | p1@ENST00000497294 |
| 1.82e-11 | FFCP PHASE1:Hg19::chr8:68318708..68318725,+#_cc5265f92f3a632162d650639464566f | p1@ENST00000483964 |
| 2.71e-11 | FFCP PHASE2:Hg19::chr16:476408..476412,+#_3b8b7a7d020da89df78168fd4c780105 | p1@AB383948 |
| 2.71e-11 | FFCP PHASE1:Hg19::chr16:476408..476412,+#_3b8b7a7d020da89df78168fd4c780105 | p1@AB383948 |
