CL:0002431: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=CD4-positive, CD8-intermediate double-positive thymocyte | |name=CD4-positive, CD8-intermediate double-positive thymocyte | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-10-21T02:29:23Z | |obo_creation_date=2010-10-21T02:29:23Z | ||
|part_of= | |part_of= | ||
Latest revision as of 16:43, 12 September 2014
| Name: | CD4-positive, CD8-intermediate double-positive thymocyte |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A double-positive thymocyte that is undergoing positive selection, has high expression of the alpha-beta T cell receptor, is CD69-positive, and is in the process of down regulating the CD4 co-receptor." [GOC:tfm, http://www.immgen.org/index_content.html] |
| Synonyms: | "T.4int8+.th" EXACT [] |
| Created by: | tmeehan |
| Creation date: | 2010-10-21T02:29:23Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000809(double-positive, alpha-beta thymocyte) |
|---|---|
| develops_from: | CL:0002429(CD69-positive double-positive thymocyte) |
Children
| develops from: | CL:0002433 (CD69-positive, CD4-positive single-positive thymocyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002431 (CD4-positive, CD8-intermediate double-positive thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_a9a14d073e6c889dd2ac2106f15d43b9 | p@chr2:162762361..162762364, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_a9a14d073e6c889dd2ac2106f15d43b9 | p@chr2:162762361..162762364, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_a9a14d073e6c889dd2ac2106f15d43b9 | p4@APOBEC4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_a9a14d073e6c889dd2ac2106f15d43b9 | p4@APOBEC4 |
| 1.36e-86 | FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_4d75394299cde7064e7339cb4d0adc52 | p@chrX:54476786..54476810, + |
| 1.36e-86 | FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_4d75394299cde7064e7339cb4d0adc52 | p@chr13:30878406..30878419, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_4d75394299cde7064e7339cb4d0adc52 | p@chr13:30878406..30878419, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_4d75394299cde7064e7339cb4d0adc52 | p@chrX:54476786..54476810, + |
| 1.01e-74 | FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_7f0b4793417bab67ff55692e3855b8a4 | p@chr16:52032670..52032685, + |
| 1.01e-74 | FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_7f0b4793417bab67ff55692e3855b8a4 | p@chr16:52032670..52032685, + |
| 2.41e-74 | FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_03c3d92a6e6ac583f7859c11845d00fd | p@chr16:93777453..93777464, + |
| 2.41e-74 | FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_03c3d92a6e6ac583f7859c11845d00fd | p1@ENSMUST00000103701 |
| 2.41e-74 | FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_03c3d92a6e6ac583f7859c11845d00fd | p@chr16:93777453..93777464, + |
| 2.41e-74 | FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_03c3d92a6e6ac583f7859c11845d00fd | p1@ENSMUST00000103701 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_21c7f1a8ae1b768a1fc0215bf834b782 | p@chr14:122362270..122362291, - |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_21c7f1a8ae1b768a1fc0215bf834b782 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_21c7f1a8ae1b768a1fc0215bf834b782 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_21c7f1a8ae1b768a1fc0215bf834b782 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_21c7f1a8ae1b768a1fc0215bf834b782 | p@chr13:30853488..30853499, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_21c7f1a8ae1b768a1fc0215bf834b782 | p@chr14:54827490..54827502, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_21c7f1a8ae1b768a1fc0215bf834b782 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_21c7f1a8ae1b768a1fc0215bf834b782 | p@chr13:30853488..30853499, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_21c7f1a8ae1b768a1fc0215bf834b782 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_21c7f1a8ae1b768a1fc0215bf834b782 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_21c7f1a8ae1b768a1fc0215bf834b782 | p@chr14:122362270..122362291, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_21c7f1a8ae1b768a1fc0215bf834b782 | p@chr14:54827490..54827502, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_552fe0a51e21b2ce33571016b5fe62be | p17@ANXA1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_552fe0a51e21b2ce33571016b5fe62be | p17@ANXA1 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_594a8f0b5f57f605dfeb4c3ed67c8deb | p@chr11:118209514..118209525, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_594a8f0b5f57f605dfeb4c3ed67c8deb | p@chr2:204816181..204816219, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_594a8f0b5f57f605dfeb4c3ed67c8deb | p@chr20:37493438..37493456, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_594a8f0b5f57f605dfeb4c3ed67c8deb | p@chr11:118209514..118209525, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_594a8f0b5f57f605dfeb4c3ed67c8deb | p@chr20:37493438..37493456, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_594a8f0b5f57f605dfeb4c3ed67c8deb | p@chr2:204816181..204816219, - |
| 1.05e-65 | FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_846b13d8502994ac6c1b75424760f2aa | p@chr14:53242248..53242261, + |
| 1.05e-65 | FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_846b13d8502994ac6c1b75424760f2aa | p@chr14:53242248..53242261, + |
| 1.74e-65 | FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_31fcf082dc24a8fa08be21aab73078ec | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 1.74e-65 | FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_31fcf082dc24a8fa08be21aab73078ec | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 2.25e-65 | FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_0ba8b3ddd803acc13519a79f07088d24 | p@chr5:123465978..123465989, - |
| 2.25e-65 | FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_0ba8b3ddd803acc13519a79f07088d24 | p10@Grap2 |
| 2.25e-65 | FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_0ba8b3ddd803acc13519a79f07088d24 | p@chr1:140069290..140069308, + |
| 2.25e-65 | FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_0ba8b3ddd803acc13519a79f07088d24 | p@chr1:140069290..140069308, + |
| 2.25e-65 | FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_0ba8b3ddd803acc13519a79f07088d24 | p10@Grap2 |
| 2.25e-65 | FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_0ba8b3ddd803acc13519a79f07088d24 | p@chr5:123465978..123465989, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_8fbeb3c66307d49c1e296e4203b2f878 | p@chr14:54817583..54817593, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_8fbeb3c66307d49c1e296e4203b2f878 | p@chr6:41504409..41504422, - |
| 2.9e-65 | FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_8fbeb3c66307d49c1e296e4203b2f878 | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_8fbeb3c66307d49c1e296e4203b2f878 | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_8fbeb3c66307d49c1e296e4203b2f878 | p@chr14:54817583..54817593, - |
| 2.9e-65 | FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_8fbeb3c66307d49c1e296e4203b2f878 | p@chr6:41504409..41504422, - |
| 3.74e-65 | FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_d6064b3a4c2ddd8786ab88760eef8c5b | p@chr4:32328217..32328228, - |
| 3.74e-65 | FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_d6064b3a4c2ddd8786ab88760eef8c5b | p@chr4:32328217..32328228, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_ea38d4afafa4ec5d602175dd55fde27c | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_ea38d4afafa4ec5d602175dd55fde27c | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_ea38d4afafa4ec5d602175dd55fde27c | p@chr13:105412781..105412798, + |
| 6.21e-65 | FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_ea38d4afafa4ec5d602175dd55fde27c | p@chr5:123465955..123465966, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_ea38d4afafa4ec5d602175dd55fde27c | p@chr13:105412781..105412798, + |
| 6.21e-65 | FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_ea38d4afafa4ec5d602175dd55fde27c | p@chr5:123465955..123465966, - |
| 1.0e-60 | FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_6104f64cf17f5fef55f09acb519d1238 | p@chr2:11097490..11097500, + |
| 1.0e-60 | FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_6104f64cf17f5fef55f09acb519d1238 | p@chr2:11097490..11097500, + |
| 1.33e-60 | FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_b2a139c39c0d548e974ee07c541fb2a0 | p@chr7:150943007..150943022, + |
| 1.33e-60 | FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_b2a139c39c0d548e974ee07c541fb2a0 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_b2a139c39c0d548e974ee07c541fb2a0 | p@chr10:128157769..128157772, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_b2a139c39c0d548e974ee07c541fb2a0 | p@chr10:128157769..128157772, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_b2a139c39c0d548e974ee07c541fb2a0 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_b2a139c39c0d548e974ee07c541fb2a0 | p@chr7:150943007..150943022, + |
| 1.33e-60 | FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_b2a139c39c0d548e974ee07c541fb2a0 | p@chr12:70398221..70398232, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_b2a139c39c0d548e974ee07c541fb2a0 | p@chr12:70398221..70398232, - |
| 1.77e-60 | FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_2b6d2f8bea8f56bd75607128e7b0d9de | p1@ENSMUST00000103582 |
| 1.77e-60 | FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_2b6d2f8bea8f56bd75607128e7b0d9de | p1@ENSMUST00000103582 |
| 2.34e-60 | FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_a03fa8119b12fb002b6726c2b68d45ad | p@chr2:73290853..73290866, + |
| 2.34e-60 | FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_a03fa8119b12fb002b6726c2b68d45ad | p@chr2:73290853..73290866, + |
| 4.1e-60 | FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_5f58d1e2e8c18b0680cd6f12113f3321 | p8@Folr4 |
| 4.1e-60 | FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_5f58d1e2e8c18b0680cd6f12113f3321 | p@chr1:138476217..138476228, + |
| 4.1e-60 | FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_5f58d1e2e8c18b0680cd6f12113f3321 | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_5f58d1e2e8c18b0680cd6f12113f3321 | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_5f58d1e2e8c18b0680cd6f12113f3321 | p@chr1:138476217..138476228, + |
| 4.1e-60 | FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_5f58d1e2e8c18b0680cd6f12113f3321 | p8@Folr4 |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_f74be00bdd5507d916edec5381e96dd2 | p4@Cd40lg |
| 6.9e-59 | FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_f74be00bdd5507d916edec5381e96dd2 | p@chr11:87558695..87558707, + |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_f74be00bdd5507d916edec5381e96dd2 | p@chrX:54477240..54477286, + |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_f74be00bdd5507d916edec5381e96dd2 | p4@Cd40lg |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_f74be00bdd5507d916edec5381e96dd2 | p@chrX:54477240..54477286, + |
| 6.9e-59 | FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_f74be00bdd5507d916edec5381e96dd2 | p@chr11:87558695..87558707, + |
| 1.09e-58 | FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_e5984f712c9f39211b99983179ccadf9 | p@chr4:32339235..32339263, + |
| 1.09e-58 | FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_e5984f712c9f39211b99983179ccadf9 | p@chr4:32339235..32339263, + |
| 1.71e-58 | FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_c625a66ae66633eeaf1425fe9ed7d93c | p5@Cd6 |
| 1.71e-58 | FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_c625a66ae66633eeaf1425fe9ed7d93c | p3@uc007ytl.1 |
| 1.71e-58 | FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_c625a66ae66633eeaf1425fe9ed7d93c | p3@uc007ytl.1 |
| 1.71e-58 | FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_c625a66ae66633eeaf1425fe9ed7d93c | p5@Cd6 |
| 2.15e-58 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_36132390cb85b423d4ca9a91f31a3e04 | p1@ENSMUST00000103733 |
| 2.15e-58 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_36132390cb85b423d4ca9a91f31a3e04 | p1@ENSMUST00000103733 |
| 2.69e-58 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_2e13774566e3e15611b49486d860edc7 | p3@Tnfrsf25 |
| 2.69e-58 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_2e13774566e3e15611b49486d860edc7 | p@chr4:32339511..32339518, + |
| 2.69e-58 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_2e13774566e3e15611b49486d860edc7 | p@chr4:32339511..32339518, + |
| 2.69e-58 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_2e13774566e3e15611b49486d860edc7 | p3@Tnfrsf25 |
| 3.38e-58 | FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_cc30ac3f595085be0999a6a275a6008e | p@chr6:48656532..48656548, + |
| 3.38e-58 | FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_cc30ac3f595085be0999a6a275a6008e | p@chr6:48656532..48656548, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr4:32342431..32342437,-#_0478b88129db921877fdf5e45c7bb6d0 | p@chr4:32342431..32342437, - |
| 3.91e-58 | FFCP PHASE1:Mm9::chr19:11603083..11603092,+#_0478b88129db921877fdf5e45c7bb6d0 | p@chr19:11603083..11603092, + |
