CL:0002293: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=epithelial cell of thymus | |name=epithelial cell of thymus | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-09-13T02:34:22Z | |obo_creation_date=2010-09-13T02:34:22Z | ||
|part_of=UBERON:0002370 | |part_of=UBERON:0002370 | ||
Latest revision as of 16:41, 12 September 2014
| Name: | epithelial cell of thymus | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An epithelial cell of the thymus. Epithelial reticular cells are pleomorphic, stellate, non-phagocytic cells which seem to be supportive in function and are held together by desmosomes. They replace the fibroblastoid reticular cells found in other lymphoid organs. Other epithelial cells in the medulla have the ultrastructure of secretory cells. Although different epithelial cells throughout the thymus appear alike by light microscopy their ultrastructure and function varies." [FMA:72208, GOC:tfm] | ||
| Xrefs: |
| ||
| Synonyms: |
"epithelial cell of thymus gland" EXACT [] "epithelial reticular cell" EXACT [] "epithelial reticular cell of thymus" EXACT [] "thymic epithelial cell" EXACT [] | ||
| Alt_id: | CL:1000459 | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-09-13T02:34:22Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002076(endo-epithelial cell) |
|---|---|
| part_of: | UBERON:0002370(thymus) |
Children
| derives from: | FF:0011508 (mouse TSt-4/DLL1 feeder cells sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 12971-138H1 (TSt-4/DLL1 feeder cells, biol_rep1)
- 12987-138I8 (TSt-4/DLL1 feeder cells, biol_rep2)
- 13003-139B6 (TSt-4/DLL1 feeder cells, biol_rep3)
Mouse (Mus musculus)
- 12971-138H1 (TSt-4/DLL1 feeder cells, biol_rep1)
- 12987-138I8 (TSt-4/DLL1 feeder cells, biol_rep2)
- 13003-139B6 (TSt-4/DLL1 feeder cells, biol_rep3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002293 (epithelial cell of thymus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:112177443..112177451,-#_5d9cf891a2d63c0dded5e3db3d3a6c58 | p@chr14:112177443..112177451, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:112177443..112177451,-#_5d9cf891a2d63c0dded5e3db3d3a6c58 | p@chr14:112177443..112177451, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:133717427..133717432,-#_46ea9cf261c98222905b99cb7b5ff9d6 | p1@Gm5886 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:133717427..133717432,-#_46ea9cf261c98222905b99cb7b5ff9d6 | p1@Gm5886 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:112177430..112177435,-#_288bbfa66a3e1dbc4be8c094575f940d | p@chr14:112177430..112177435, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:112177430..112177435,-#_288bbfa66a3e1dbc4be8c094575f940d | p@chr14:112177430..112177435, - |
| 2.66e-39 | FFCP PHASE2:Mm9::chr18:60756420..60756422,-#_be8c3b675c479a8dd9714a33289cab88 | p@chr18:60756420..60756422, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr18:60756420..60756422,-#_be8c3b675c479a8dd9714a33289cab88 | p@chr18:60756420..60756422, - |
| 4.15e-39 | FFCP PHASE2:Mm9::chr10:56098964..56098995,+#_e133f338779c1eb6d6365dfb6aec0e12 | p8@Gja1 |
| 4.15e-39 | FFCP PHASE1:Mm9::chr10:56098964..56098995,+#_e133f338779c1eb6d6365dfb6aec0e12 | p8@Gja1 |
| 1.17e-38 | FFCP PHASE2:Mm9::chr16:43697176..43697178,+#_8ac2aa2ca4bb35d18e1349fc79591328 | p@chr16:43697176..43697178, + |
| 1.17e-38 | FFCP PHASE1:Mm9::chr16:25410824..25410841,+#_8ac2aa2ca4bb35d18e1349fc79591328 | p@chr16:25410824..25410841, + |
| 1.17e-38 | FFCP PHASE2:Mm9::chr16:25410824..25410841,+#_8ac2aa2ca4bb35d18e1349fc79591328 | p@chr16:25410824..25410841, + |
| 1.17e-38 | FFCP PHASE1:Mm9::chr16:43697176..43697178,+#_8ac2aa2ca4bb35d18e1349fc79591328 | p@chr16:43697176..43697178, + |
| 2.09e-38 | FFCP PHASE2:Mm9::chr9:123059977..123059986,+#_04acebc0d4390cb54d96a07103ef89d5 | p3@Clec3b |
| 2.09e-38 | FFCP PHASE1:Mm9::chr9:123059977..123059986,+#_04acebc0d4390cb54d96a07103ef89d5 | p3@Clec3b |
| 3.73e-38 | FFCP PHASE2:Mm9::chr16:57645189..57645193,-#_3082b814dd801336d425faa9f42ab885 | p@chr16:57645189..57645193, - |
| 3.73e-38 | FFCP PHASE1:Mm9::chr16:57645189..57645193,-#_3082b814dd801336d425faa9f42ab885 | p@chr16:57645189..57645193, - |
| 1.18e-37 | FFCP PHASE2:Mm9::chr2:33610787..33610805,-#_e5b57431aaf59f9886d750b0d0b02501 | p@chr2:33610787..33610805, - |
| 1.18e-37 | FFCP PHASE1:Mm9::chr2:33610787..33610805,-#_e5b57431aaf59f9886d750b0d0b02501 | p@chr2:33610787..33610805, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr15:42921976..42921980,-#_f7c3e2ca8ce61df04a5ad0404154605a | p@chr15:42921976..42921980, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr13:50513294..50513301,+#_f7c3e2ca8ce61df04a5ad0404154605a | p4@Fbxw17 |
| 3.67e-34 | FFCP PHASE1:Mm9::chr13:50513294..50513301,+#_f7c3e2ca8ce61df04a5ad0404154605a | p4@Fbxw17 |
| 3.67e-34 | FFCP PHASE1:Mm9::chr15:42921976..42921980,-#_f7c3e2ca8ce61df04a5ad0404154605a | p@chr15:42921976..42921980, - |
| 7.89e-34 | FFCP PHASE1:Mm9::chr8:30830021..30830026,+#_7a10a0dde1426986e2c32209955105db | p@chr8:30830021..30830026, + |
| 7.89e-34 | FFCP PHASE2:Mm9::chr8:30830021..30830026,+#_7a10a0dde1426986e2c32209955105db | p@chr8:30830021..30830026, + |
| 1.02e-33 | FFCP PHASE2:Mm9::chr17:71340057..71340067,-#_0969c048ee5e8e93dd0a811b3fa62cdb | p6@Myl12b |
| 1.02e-33 | FFCP PHASE1:Mm9::chr17:71340057..71340067,-#_0969c048ee5e8e93dd0a811b3fa62cdb | p6@Myl12b |
| 3.61e-33 | FFCP PHASE2:Mm9::chr6:117124014..117124032,+#_6a3876cbad4277f8890f3166d8d1345e | p@chr6:117124014..117124032, + |
| 3.61e-33 | FFCP PHASE1:Mm9::chr6:117124014..117124032,+#_6a3876cbad4277f8890f3166d8d1345e | p@chr6:117124014..117124032, + |
| 1.16e-30 | FFCP PHASE1:Mm9::chr15:6531079..6531094,-#_46d895574324e6fe2a0ff1766543174a | p@chr15:6531079..6531094, - |
| 1.16e-30 | FFCP PHASE2:Mm9::chr15:6531079..6531094,-#_46d895574324e6fe2a0ff1766543174a | p@chr15:6531079..6531094, - |
| 1.46e-30 | FFCP PHASE2:Mm9::chr5:34142228..34142234,+#_630180c5d06a66c3af2d28af45fd1837 | p@chr5:34142228..34142234, + |
| 1.46e-30 | FFCP PHASE1:Mm9::chr18:43482321..43482324,-#_630180c5d06a66c3af2d28af45fd1837 | p8@uc008euf.1 |
| 1.46e-30 | FFCP PHASE2:Mm9::chr18:43482321..43482324,-#_630180c5d06a66c3af2d28af45fd1837 | p8@uc008euf.1 |
| 1.46e-30 | FFCP PHASE1:Mm9::chr5:34142228..34142234,+#_630180c5d06a66c3af2d28af45fd1837 | p@chr5:34142228..34142234, + |
| 1.46e-30 | FFCP PHASE2:Mm9::chr19:61126795..61126797,+#_630180c5d06a66c3af2d28af45fd1837 | p@chr19:61126795..61126797, + |
| 1.46e-30 | FFCP PHASE1:Mm9::chr19:61126795..61126797,+#_630180c5d06a66c3af2d28af45fd1837 | p@chr19:61126795..61126797, + |
| 2.3e-30 | FFCP PHASE1:Mm9::chr9:96626390..96626394,-#_c877089d9c94709952015f634fc8be5e | p@chr9:96626390..96626394, - |
| 2.3e-30 | FFCP PHASE2:Mm9::chr9:96626390..96626394,-#_c877089d9c94709952015f634fc8be5e | p@chr9:96626390..96626394, - |
| 2.89e-30 | FFCP PHASE1:Mm9::chr18:52689547..52689558,-#_7419c0d7b1b7d82fd5618b31635f3c7c | p8@Lox |
| 2.89e-30 | FFCP PHASE2:Mm9::chr18:52689547..52689558,-#_7419c0d7b1b7d82fd5618b31635f3c7c | p8@Lox |
| 7.89e-30 | FFCP PHASE2:Mm9::chr2:26122852..26122853,+#_a40411649638339904771104e690922f | p@chr2:26122852..26122853, + |
| 7.89e-30 | FFCP PHASE1:Mm9::chr2:26122852..26122853,+#_a40411649638339904771104e690922f | p@chr2:26122852..26122853, + |
| 7.89e-30 | FFCP PHASE2:Mm9::chr8:17590516..17590544,+#_a40411649638339904771104e690922f | p@chr8:17590516..17590544, + |
| 7.89e-30 | FFCP PHASE1:Mm9::chr8:17590516..17590544,+#_a40411649638339904771104e690922f | p@chr8:17590516..17590544, + |
| 1.4e-29 | FFCP PHASE1:Mm9::chr1:127573438..127573451,+#_abc4329d1e81d77d98ef0e95fd62f6f5 | p5@Gpr39 |
| 1.4e-29 | FFCP PHASE2:Mm9::chr1:127573438..127573451,+#_abc4329d1e81d77d98ef0e95fd62f6f5 | p5@Gpr39 |
| 7.38e-28 | FFCP PHASE1:Mm9::chr3:85412245..85412258,+#_ca0c9342874d54b1edfb4543f9fd6a9a | p@chr3:85412245..85412258, + |
| 7.38e-28 | FFCP PHASE2:Mm9::chr16:24733721..24733736,+#_ca0c9342874d54b1edfb4543f9fd6a9a | p@chr16:24733721..24733736, + |
| 7.38e-28 | FFCP PHASE2:Mm9::chr3:85412245..85412258,+#_ca0c9342874d54b1edfb4543f9fd6a9a | p@chr3:85412245..85412258, + |
| 7.38e-28 | FFCP PHASE1:Mm9::chr16:24733721..24733736,+#_ca0c9342874d54b1edfb4543f9fd6a9a | p@chr16:24733721..24733736, + |
| 4.66e-27 | FFCP PHASE2:Mm9::chr17:35096529..35096537,-#_3da49894889ff484fb524ae1df28d4ee | p2@Hspa1b |
| 4.66e-27 | FFCP PHASE1:Mm9::chr13:113836524..113836535,-#_3da49894889ff484fb524ae1df28d4ee | p@chr13:113836524..113836535, - |
| 4.66e-27 | FFCP PHASE2:Mm9::chr2:24192234..24192242,+#_3da49894889ff484fb524ae1df28d4ee | p7@Il1rn |
| 4.66e-27 | FFCP PHASE2:Mm9::chr13:113836524..113836535,-#_3da49894889ff484fb524ae1df28d4ee | p@chr13:113836524..113836535, - |
| 4.66e-27 | FFCP PHASE1:Mm9::chr17:35096529..35096537,-#_3da49894889ff484fb524ae1df28d4ee | p2@Hspa1b |
| 4.66e-27 | FFCP PHASE1:Mm9::chr2:24192234..24192242,+#_3da49894889ff484fb524ae1df28d4ee | p7@Il1rn |
| 2.56e-25 | FFCP PHASE1:Mm9::chr16:34785003..34785021,+#_b59049e6fa2369420b1434e2f6ff434c | p12@Mylk |
| 2.56e-25 | FFCP PHASE2:Mm9::chr16:34785003..34785021,+#_b59049e6fa2369420b1434e2f6ff434c | p12@Mylk |
| 2.28e-24 | FFCP PHASE1:Mm9::chr16:25865901..25865908,+#_d86b07d86d563103806dec17ce3dd917 | p@chr16:25865901..25865908, + |
| 2.28e-24 | FFCP PHASE1:Mm9::chr7:91716821..91716828,+#_d86b07d86d563103806dec17ce3dd917 | p@chr7:91716821..91716828, + |
| 2.28e-24 | FFCP PHASE2:Mm9::chr16:25865901..25865908,+#_d86b07d86d563103806dec17ce3dd917 | p@chr16:25865901..25865908, + |
| 2.28e-24 | FFCP PHASE2:Mm9::chr7:91716821..91716828,+#_d86b07d86d563103806dec17ce3dd917 | p@chr7:91716821..91716828, + |
| 2.28e-24 | FFCP PHASE1:Mm9::chr6:117123958..117123965,+#_d86b07d86d563103806dec17ce3dd917 | p@chr6:117123958..117123965, + |
| 2.28e-24 | FFCP PHASE2:Mm9::chr6:117123958..117123965,+#_d86b07d86d563103806dec17ce3dd917 | p@chr6:117123958..117123965, + |
| 2.99e-24 | FFCP PHASE1:Mm9::chr9:57820319..57820333,+#_c7370bd4a85e654027dc46c4e607cd5a | p@chr9:57820319..57820333, + |
| 2.99e-24 | FFCP PHASE2:Mm9::chr9:57820319..57820333,+#_c7370bd4a85e654027dc46c4e607cd5a | p@chr9:57820319..57820333, + |
| 2.99e-24 | FFCP PHASE2:Mm9::chr10:37035191..37035196,+#_c7370bd4a85e654027dc46c4e607cd5a | p@chr10:37035191..37035196, + |
| 2.99e-24 | FFCP PHASE1:Mm9::chr1:165242551..165242554,-#_c7370bd4a85e654027dc46c4e607cd5a | p@chr1:165242551..165242554, - |
| 2.99e-24 | FFCP PHASE2:Mm9::chr1:165242551..165242554,-#_c7370bd4a85e654027dc46c4e607cd5a | p@chr1:165242551..165242554, - |
| 2.99e-24 | FFCP PHASE1:Mm9::chr14:47906833..47906835,+#_c7370bd4a85e654027dc46c4e607cd5a | p@chr14:47906833..47906835, + |
| 2.99e-24 | FFCP PHASE1:Mm9::chr19:34325562..34325568,-#_c7370bd4a85e654027dc46c4e607cd5a | p@chr19:34325562..34325568, - |
| 2.99e-24 | FFCP PHASE1:Mm9::chr18:52718847..52718852,+#_c7370bd4a85e654027dc46c4e607cd5a | p@chr18:52718847..52718852, + |
| 2.99e-24 | FFCP PHASE2:Mm9::chr19:34325562..34325568,-#_c7370bd4a85e654027dc46c4e607cd5a | p@chr19:34325562..34325568, - |
| 2.99e-24 | FFCP PHASE2:Mm9::chr18:52718847..52718852,+#_c7370bd4a85e654027dc46c4e607cd5a | p@chr18:52718847..52718852, + |
| 2.99e-24 | FFCP PHASE1:Mm9::chr10:37035191..37035196,+#_c7370bd4a85e654027dc46c4e607cd5a | p@chr10:37035191..37035196, + |
| 2.99e-24 | FFCP PHASE2:Mm9::chr14:47906833..47906835,+#_c7370bd4a85e654027dc46c4e607cd5a | p@chr14:47906833..47906835, + |
| 5.11e-24 | FFCP PHASE1:Mm9::chr15:102809727..102809760,-#_9364a99bca86b0ae3f3011f6d79ecb94 | p@chr15:102809727..102809760, - |
| 5.11e-24 | FFCP PHASE1:Mm9::chr1:135811991..135811998,-#_9364a99bca86b0ae3f3011f6d79ecb94 | p@chr1:135811991..135811998, - |
| 5.11e-24 | FFCP PHASE2:Mm9::chr15:102809727..102809760,-#_9364a99bca86b0ae3f3011f6d79ecb94 | p@chr15:102809727..102809760, - |
| 5.11e-24 | FFCP PHASE2:Mm9::chr1:135811991..135811998,-#_9364a99bca86b0ae3f3011f6d79ecb94 | p@chr1:135811991..135811998, - |
| 8.72e-24 | FFCP PHASE2:Mm9::chr11:43827555..43827566,+#_12df956fcd849191b7cc697166e5d83f | p@chr11:43827555..43827566, + |
| 8.72e-24 | FFCP PHASE2:Mm9::chr3:86343806..86343829,+#_12df956fcd849191b7cc697166e5d83f | p@chr3:86343806..86343829, + |
| 8.72e-24 | FFCP PHASE1:Mm9::chr15:43002499..43002541,-#_12df956fcd849191b7cc697166e5d83f | p4@Rspo2 |
| 8.72e-24 | FFCP PHASE1:Mm9::chr11:43827555..43827566,+#_12df956fcd849191b7cc697166e5d83f | p@chr11:43827555..43827566, + |
| 8.72e-24 | FFCP PHASE2:Mm9::chr15:43002499..43002541,-#_12df956fcd849191b7cc697166e5d83f | p4@Rspo2 |
| 8.72e-24 | FFCP PHASE1:Mm9::chr3:86343806..86343829,+#_12df956fcd849191b7cc697166e5d83f | p@chr3:86343806..86343829, + |
| 1.19e-23 | FFCP PHASE2:Mm9::chr1:85196170..85196197,+#_2e57cf6d64457072dc927ac52214d867 | p1@Gm7609 |
| 1.19e-23 | FFCP PHASE2:Mm9::chr16:14705746..14705761,+#_2e57cf6d64457072dc927ac52214d867 | p4@Snai2 |
| 1.19e-23 | FFCP PHASE2:Mm9::chr6:92868061..92868079,-#_2e57cf6d64457072dc927ac52214d867 | p@chr6:92868061..92868079, - |
| 1.19e-23 | FFCP PHASE1:Mm9::chr1:85196170..85196197,+#_2e57cf6d64457072dc927ac52214d867 | p1@Gm7609 |
| 1.19e-23 | FFCP PHASE1:Mm9::chr6:92868061..92868079,-#_2e57cf6d64457072dc927ac52214d867 | p@chr6:92868061..92868079, - |
| 1.19e-23 | FFCP PHASE1:Mm9::chr16:14705746..14705761,+#_2e57cf6d64457072dc927ac52214d867 | p4@Snai2 |
| 1.69e-23 | FFCP PHASE2:Mm9::chr3:151500392..151500405,-#_c16701947e615e6c77e4f709898095f3 | p2@Ptgfr |
| 1.69e-23 | FFCP PHASE1:Mm9::chr3:151500392..151500405,-#_c16701947e615e6c77e4f709898095f3 | p2@Ptgfr |
| 1.1e-22 | FFCP PHASE2:Mm9::chr11:104304820..104304832,-#_eb97b163343f5b05759cce4ab7fb3a3c | p@chr11:104304820..104304832, - |
| 1.1e-22 | FFCP PHASE1:Mm9::chr11:104304820..104304832,-#_eb97b163343f5b05759cce4ab7fb3a3c | p@chr11:104304820..104304832, - |
| 4.98e-22 | FFCP PHASE1:Mm9::chr15:42967592..42967594,-#_27b2dd4ca4e8778ae14f80f3e62a3e35 | p@chr15:42967592..42967594, - |
| 4.98e-22 | FFCP PHASE2:Mm9::chr15:42967592..42967594,-#_27b2dd4ca4e8778ae14f80f3e62a3e35 | p@chr15:42967592..42967594, - |
