CL:0000064: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=ciliated cell | |name=ciliated cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:29, 12 September 2014
| Name: | ciliated cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell that has a filiform extrusion of the cell surface." [GOC:tfm] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000003(native cell) |
|---|
Children
| is a: | CL:0000067 (ciliated epithelial cell),CL:0005012 (multi-ciliated epithelial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
Mouse (Mus musculus)
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000064 (ciliated cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.93e-147 | FFCP PHASE1:Hg19::chr12:97856211..97856221,+#_a768e7dc9ac72382e000522400c68326 | p@chr12:97856211..97856221, + |
| 8.93e-147 | FFCP PHASE2:Hg19::chr12:97856211..97856221,+#_a768e7dc9ac72382e000522400c68326 | p@chr12:97856211..97856221, + |
| 7.78e-118 | FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_3269d0e27d2db76dd2e81202eb730247 | p@chr13:36052762..36052767, - |
| 7.78e-118 | FFCP PHASE1:Hg19::chr8:41119800..41119811,-#_3269d0e27d2db76dd2e81202eb730247 | p5@SFRP1 |
| 7.78e-118 | FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_3269d0e27d2db76dd2e81202eb730247 | p@chr13:36052762..36052767, - |
| 7.78e-118 | FFCP PHASE2:Hg19::chr8:41119800..41119811,-#_3269d0e27d2db76dd2e81202eb730247 | p5@SFRP1 |
| 2.59e-117 | FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_23551af19ecb715b074957887c5d3d04 | p@chr16:58896129..58896134, - |
| 2.59e-117 | FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_23551af19ecb715b074957887c5d3d04 | p@chrX:106198807..106198826, - |
| 2.59e-117 | FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_23551af19ecb715b074957887c5d3d04 | p@chrX:106198807..106198826, - |
| 2.59e-117 | FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_23551af19ecb715b074957887c5d3d04 | p@chr16:58896129..58896134, - |
| 4.06e-99 | FFCP PHASE2:Hg19::chr14:61654180..61654191,+#_d73cd4725f4055d117a68d8be6bef9a9 | p33@PRKCH |
| 4.06e-99 | FFCP PHASE1:Hg19::chr14:61654180..61654191,+#_d73cd4725f4055d117a68d8be6bef9a9 | p33@PRKCH |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:106146585..106146594,-#_55ccc8b39c3343ed8c4880d6eaddd0e8 | p2@RIPPLY1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:106146585..106146594,-#_55ccc8b39c3343ed8c4880d6eaddd0e8 | p2@RIPPLY1 |
| 6.24e-88 | FFCP PHASE1:Hg19::chr2:210798666..210798677,+#_85bb2b20ae0a423c1939ff39239d64f4 | p@chr2:210798666..210798677, + |
| 6.24e-88 | FFCP PHASE2:Hg19::chr2:210798666..210798677,+#_85bb2b20ae0a423c1939ff39239d64f4 | p@chr2:210798666..210798677, + |
| 1.52e-87 | FFCP PHASE1:Hg19::chr13:36052713..36052724,-#_b4385416895ddf0c666f67ef183d05a1 | p@chr13:36052713..36052724, - |
| 1.52e-87 | FFCP PHASE2:Hg19::chr13:36052713..36052724,-#_b4385416895ddf0c666f67ef183d05a1 | p@chr13:36052713..36052724, - |
| 4.06e-85 | FFCP PHASE1:Hg19::chr11:27240276..27240289,-#_5b8a5c7fe10dd9cdd7f9219fe70fb984 | p1@ENST00000526061 |
| 4.06e-85 | FFCP PHASE2:Hg19::chr11:27240276..27240289,-#_5b8a5c7fe10dd9cdd7f9219fe70fb984 | p1@ENST00000526061 |
| 9.61e-85 | FFCP PHASE1:Hg19::chr10:91294399..91294401,-#_3d9a3ed02b348c8c87bfb039d3d0ad29 | p@chr10:91294399..91294401, - |
| 9.61e-85 | FFCP PHASE2:Hg19::chr10:91294399..91294401,-#_3d9a3ed02b348c8c87bfb039d3d0ad29 | p@chr10:91294399..91294401, - |
| 1.28e-84 | FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_18004524052e272e2a9c0efc69334e12 | p1@BC033145 |
| 1.28e-84 | FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_18004524052e272e2a9c0efc69334e12 | p1@BC033145 |
| 4.72e-75 | FFCP PHASE1:Hg19::chr2:45166478..45166502,-#_e86d2ee40e6e9210ba3813cd0eddab29 | p3@ENST00000437916 |
| 4.72e-75 | FFCP PHASE2:Hg19::chr2:45166478..45166502,-#_e86d2ee40e6e9210ba3813cd0eddab29 | p3@ENST00000437916 |
| 1.66e-74 | FFCP PHASE1:Hg19::chr8:94713146..94713159,+#_f5923acb10d8accb106e4c6457fdb751 | p8@FAM92A1 |
| 1.66e-74 | FFCP PHASE2:Hg19::chr8:94713146..94713159,+#_f5923acb10d8accb106e4c6457fdb751 | p8@FAM92A1 |
| 2.75e-74 | FFCP PHASE2:Hg19::chr4:183006122..183006131,-#_58aed24b1ba3a1f72060559a06c3a6dc | p3@ENST00000505537 |
| 2.75e-74 | FFCP PHASE1:Hg19::chr4:183006122..183006131,-#_58aed24b1ba3a1f72060559a06c3a6dc | p3@ENST00000505537 |
| 7.85e-67 | FFCP PHASE1:Hg19::chr3:110846331..110846333,+#_fe339e2888d76f8c3c71b827cefa6bb2 | p@chr3:110846331..110846333, + |
| 7.85e-67 | FFCP PHASE2:Hg19::chr3:110846331..110846333,+#_fe339e2888d76f8c3c71b827cefa6bb2 | p@chr3:110846331..110846333, + |
| 9.82e-67 | FFCP PHASE2:Hg19::chr2:237677787..237677800,+#_b0ab9e0d07bb03e18c11643301b5adcd | p@chr2:237677787..237677800, + |
| 9.82e-67 | FFCP PHASE1:Hg19::chr2:237677787..237677800,+#_b0ab9e0d07bb03e18c11643301b5adcd | p@chr2:237677787..237677800, + |
| 1.54e-66 | FFCP PHASE1:Hg19::chr11:89224826..89224839,-#_c64b5995c83268e05fcde655630f0db3 | p14@NOX4 |
| 1.54e-66 | FFCP PHASE2:Hg19::chr11:89224826..89224839,-#_c64b5995c83268e05fcde655630f0db3 | p14@NOX4 |
| 1.71e-66 | FFCP PHASE1:Hg19::chr1:218579326..218579337,+#_7c0e7d030845d7f74ad7d35568163523 | p@chr1:218579326..218579337, + |
| 1.71e-66 | FFCP PHASE2:Hg19::chr1:218579326..218579337,+#_7c0e7d030845d7f74ad7d35568163523 | p@chr1:218579326..218579337, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:30716539..30716546,+#_38aa88ab6ee51a341a8e16aef7aed1c4 | p@chr19:30716539..30716546, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:63196015..63196016,+#_38aa88ab6ee51a341a8e16aef7aed1c4 | p@chr2:63196015..63196016, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:30716539..30716546,+#_38aa88ab6ee51a341a8e16aef7aed1c4 | p@chr19:30716539..30716546, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:63196015..63196016,+#_38aa88ab6ee51a341a8e16aef7aed1c4 | p@chr2:63196015..63196016, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_f135dac4dba9cef5c7dbd413159544e8 | p@chr7:115723897..115723915, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_f135dac4dba9cef5c7dbd413159544e8 | p@chr7:115723897..115723915, - |
| 2.41e-66 | FFCP PHASE1:Hg19::chr3:139258648..139258667,+#_04d98679019cd17e7e4d5d1f999af1d3 | p1@ENST00000381790 |
| 2.41e-66 | FFCP PHASE2:Hg19::chr3:139258648..139258667,+#_04d98679019cd17e7e4d5d1f999af1d3 | p1@ENST00000381790 |
| 3.35e-66 | FFCP PHASE1:Hg19::chr15:79501729..79501736,+#_2208000b0363ef8e94cc5b7a914555a0 | p1@MIR184 |
| 3.35e-66 | FFCP PHASE2:Hg19::chr15:79501729..79501736,+#_2208000b0363ef8e94cc5b7a914555a0 | p1@MIR184 |
| 4.68e-66 | FFCP PHASE2:Hg19::chr3:50191610..50191612,-#_8362b939931de4af651d8852afee2b02 | p@chr3:50191610..50191612, - |
| 4.68e-66 | FFCP PHASE1:Hg19::chr3:50191610..50191612,-#_8362b939931de4af651d8852afee2b02 | p@chr3:50191610..50191612, - |
| 6.53e-66 | FFCP PHASE1:Hg19::chrX:106142727..106142730,-#_1f0ab7b720a602aaf2cd1bf6932acd40 | p@chrX:106142727..106142730, - |
| 6.53e-66 | FFCP PHASE1:Hg19::chr1:12416343..12416350,+#_1f0ab7b720a602aaf2cd1bf6932acd40 | p@chr1:12416343..12416350, + |
| 6.53e-66 | FFCP PHASE2:Hg19::chrX:106142727..106142730,-#_1f0ab7b720a602aaf2cd1bf6932acd40 | p@chrX:106142727..106142730, - |
| 6.53e-66 | FFCP PHASE2:Hg19::chr1:12416343..12416350,+#_1f0ab7b720a602aaf2cd1bf6932acd40 | p@chr1:12416343..12416350, + |
| 2.43e-60 | FFCP PHASE1:Hg19::chr5:31235359..31235362,+#_10bf5d0f7c25e74c2a857dcc5fb5ecb8 | p@chr5:31235359..31235362, + |
| 2.43e-60 | FFCP PHASE2:Hg19::chr5:31235359..31235362,+#_10bf5d0f7c25e74c2a857dcc5fb5ecb8 | p@chr5:31235359..31235362, + |
| 8.17e-60 | FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_b856eb40b8c98b67d782a3850e6e0967 | p1@CLRN1 |
| 8.17e-60 | FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_b856eb40b8c98b67d782a3850e6e0967 | p1@CLRN1 |
| 2.73e-59 | FFCP PHASE2:Hg19::chr8:124692287..124692298,+#_435a6798b480dd91f82308cf1e16b7a4 | p@chr8:124692287..124692298, + |
| 2.73e-59 | FFCP PHASE1:Hg19::chr8:124692287..124692298,+#_435a6798b480dd91f82308cf1e16b7a4 | p@chr8:124692287..124692298, + |
| 2.4e-55 | FFCP PHASE2:Hg19::chr3:110888243..110888248,+#_e292d79238a988091be63b88c9602e31 | p@chr3:110888243..110888248, + |
| 2.4e-55 | FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_e292d79238a988091be63b88c9602e31 | p30@PRKCH |
| 2.4e-55 | FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_e292d79238a988091be63b88c9602e31 | p30@PRKCH |
| 2.4e-55 | FFCP PHASE1:Hg19::chr3:110888243..110888248,+#_e292d79238a988091be63b88c9602e31 | p@chr3:110888243..110888248, + |
| 7.24e-55 | FFCP PHASE1:Hg19::chr14:60975914..60975925,+#_6690ff78a1627f5c3fd52845ced5c275 | p5@SIX6 |
| 7.24e-55 | FFCP PHASE2:Hg19::chr14:60975914..60975925,+#_6690ff78a1627f5c3fd52845ced5c275 | p5@SIX6 |
| 1.25e-54 | FFCP PHASE1:Hg19::chr14:60981789..60981803,+#_070a4642a853ffd7cf1a9bf6724da6b8 | p1@ENST00000557618 |
| 1.25e-54 | FFCP PHASE2:Hg19::chr14:60981789..60981803,+#_070a4642a853ffd7cf1a9bf6724da6b8 | p1@ENST00000557618 |
| 3.76e-54 | FFCP PHASE1:Hg19::chr2:45168617..45168631,-#_fade6bc2f589fad8e2e5569fd13c06ca | p1@ENST00000456467 |
| 3.76e-54 | FFCP PHASE2:Hg19::chr2:45168617..45168631,-#_fade6bc2f589fad8e2e5569fd13c06ca | p1@ENST00000456467 |
| 1.68e-53 | FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_e17a0c6fd3c9e09a808ba0aed28e2a87 | p@chr7:115723925..115723935, - |
| 1.68e-53 | FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_e17a0c6fd3c9e09a808ba0aed28e2a87 | p@chr7:115723925..115723935, - |
| 2.87e-53 | FFCP PHASE2:Hg19::chr11:31671561..31671580,+#_a6c50d612c0c36d88a3aa39795c301f2 | p@chr11:31671561..31671580, + |
| 2.87e-53 | FFCP PHASE1:Hg19::chr4:169623845..169623853,+#_a6c50d612c0c36d88a3aa39795c301f2 | p@chr4:169623845..169623853, + |
| 2.87e-53 | FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_a6c50d612c0c36d88a3aa39795c301f2 | p@chr2:35680607..35680613, - |
| 2.87e-53 | FFCP PHASE2:Hg19::chr4:169623845..169623853,+#_a6c50d612c0c36d88a3aa39795c301f2 | p@chr4:169623845..169623853, + |
| 2.87e-53 | FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_a6c50d612c0c36d88a3aa39795c301f2 | p@chr2:35680607..35680613, - |
| 2.87e-53 | FFCP PHASE1:Hg19::chr11:31671561..31671580,+#_a6c50d612c0c36d88a3aa39795c301f2 | p@chr11:31671561..31671580, + |
| 6.39e-53 | FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_f2f05eb630d55ab0115f4a293e663c37 | p@chr7:131803806..131803815, + |
| 6.39e-53 | FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_f2f05eb630d55ab0115f4a293e663c37 | p@chr7:131803806..131803815, + |
| 1.14e-50 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_7e7496014d16939991b7079171f6996f | p7@PTPRU |
| 1.14e-50 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_7e7496014d16939991b7079171f6996f | p7@PTPRU |
| 1.89e-50 | FFCP PHASE2:Hg19::chr13:94028319..94028321,+#_578e3e791582a469e6234d68404a3c9c | p@chr13:94028319..94028321, + |
| 1.89e-50 | FFCP PHASE1:Hg19::chr13:94028319..94028321,+#_578e3e791582a469e6234d68404a3c9c | p@chr13:94028319..94028321, + |
| 4.05e-47 | FFCP PHASE1:Hg19::chr10:103990396..103990405,+#_75889bed3a954a27c9dc13938ce5ef5c | p@chr10:103990396..103990405, + |
| 4.05e-47 | FFCP PHASE1:Hg19::chr2:66670833..66670853,+#_75889bed3a954a27c9dc13938ce5ef5c | p@chr2:66670833..66670853, + |
| 4.05e-47 | FFCP PHASE1:Hg19::chr11:2973356..2973367,-#_75889bed3a954a27c9dc13938ce5ef5c | p11@NAP1L4 |
| 4.05e-47 | FFCP PHASE2:Hg19::chr10:103990396..103990405,+#_75889bed3a954a27c9dc13938ce5ef5c | p@chr10:103990396..103990405, + |
| 4.05e-47 | FFCP PHASE2:Hg19::chr2:66670833..66670853,+#_75889bed3a954a27c9dc13938ce5ef5c | p@chr2:66670833..66670853, + |
| 4.05e-47 | FFCP PHASE2:Hg19::chr11:2973356..2973367,-#_75889bed3a954a27c9dc13938ce5ef5c | p11@NAP1L4 |
| 8.84e-47 | FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_ffa02d5db4c81fccd3ac03feeab656aa | p1@RIPPLY1 |
| 8.84e-47 | FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_ffa02d5db4c81fccd3ac03feeab656aa | p1@RIPPLY1 |
| 8.84e-47 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_ffa02d5db4c81fccd3ac03feeab656aa | p3@SIX6 |
| 8.84e-47 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_ffa02d5db4c81fccd3ac03feeab656aa | p3@SIX6 |
| 1.21e-46 | FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_da1ec0f337c4caf7c21ef872136668b6 | p4@SIX6 |
| 1.21e-46 | FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_da1ec0f337c4caf7c21ef872136668b6 | p4@SIX6 |
| 1.21e-46 | FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_da1ec0f337c4caf7c21ef872136668b6 | p1@OPTC |
| 1.21e-46 | FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_da1ec0f337c4caf7c21ef872136668b6 | p1@OPTC |
| 4.17e-46 | FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_6c662a8a145fa8f3c710411d6f916722 | p8@NBEA |
| 4.17e-46 | FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_6c662a8a145fa8f3c710411d6f916722 | p8@NBEA |
