FF:13367-143G1: Difference between revisions

Latest revision as of 18:57, 4 June 2020

Name:	Tracheal epithelial cells, differentiation to ciliated epithelial cells
Species:	Mouse (Mus musculus)
Library ID:	CNhs13739
Sample type:	time courses
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	NA
dev stage	NA
sex	female
age	NA
cell type	SELECT CELL TYPE
cell line	NA
company	NA
collaboration	Mitsuru Morimoto
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0-1
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004953

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13739		CAGE		DRX008911		DRR009785

Accession ID Mm9

Library id		BAM		CTSS
CNhs13739		DRZ001210		DRZ002593

Accession ID Mm10

Library id		BAM		CTSS
CNhs13739		DRZ012560		DRZ013943

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13739

0	0
1	0
10	0
100	0
1000	0.0426
1001	-0.0749
1002	-0.116
1003	-0.001
1004	0
1005	0.233
1006	-0.341
1007	-0.255
1008	0
1009	-0.157
101	0.0637
1010	0
1011	-0.227
1012	0
1013	0.0459
1014	0
1015	-0.0842
1016	-0.289
1017	0
1018	0.849
1019	0
102	0
1020	0.217
1021	0.156
1022	-0.124
1023	0
1024	-0.0899
1025	0
1026	0
1027	-0.048
1028	0.0851
1029	-0.0977
103	-0.0887
1030	0
1031	-0.581
1032	-0.0914
1033	0.0537
1034	0
1035	0
1036	0.223
1037	0
1038	-0.202
1039	-0.133
104	0
1040	-0.00144
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13739

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.31
MA0003.1	MA0003.1	0.486
MA0004.1	MA0004.1	0.735
MA0006.1	MA0006.1	0.286
MA0007.1	MA0007.1	0.584
MA0009.1	MA0009.1	0.109
MA0014.1	MA0014.1	0.0802
MA0017.1	MA0017.1	0.724
MA0018.2	MA0018.2	0.0389
MA0019.1	MA0019.1	0.0686
MA0024.1	MA0024.1	0.252
MA0025.1	MA0025.1	0.372
MA0027.1	MA0027.1	0.994
MA0028.1	MA0028.1	1.93526e-6
MA0029.1	MA0029.1	0.543
MA0030.1	MA0030.1	0.656
MA0031.1	MA0031.1	0.992
MA0035.2	MA0035.2	2.26598e-4
MA0038.1	MA0038.1	0.0289
MA0039.2	MA0039.2	0.00851
MA0040.1	MA0040.1	0.737
MA0041.1	MA0041.1	0.572
MA0042.1	MA0042.1	0.662
MA0043.1	MA0043.1	0.591
MA0046.1	MA0046.1	5.91984e-5
MA0047.2	MA0047.2	0.0697
MA0048.1	MA0048.1	0.00623
MA0050.1	MA0050.1	0.293
MA0051.1	MA0051.1	0.406
MA0052.1	MA0052.1	0.0116
MA0055.1	MA0055.1	4.67238e-5
MA0057.1	MA0057.1	0.163
MA0058.1	MA0058.1	0.792
MA0059.1	MA0059.1	0.0823
MA0060.1	MA0060.1	0.0474
MA0061.1	MA0061.1	0.12
MA0062.2	MA0062.2	2.00983e-8
MA0065.2	MA0065.2	0.174
MA0066.1	MA0066.1	0.293
MA0067.1	MA0067.1	0.216
MA0068.1	MA0068.1	0.941
MA0069.1	MA0069.1	0.586
MA0070.1	MA0070.1	0.0756
MA0071.1	MA0071.1	0.313
MA0072.1	MA0072.1	0.548
MA0073.1	MA0073.1	0.641
MA0074.1	MA0074.1	0.5
MA0076.1	MA0076.1	2.93977e-5
MA0077.1	MA0077.1	0.444
MA0078.1	MA0078.1	0.315
MA0079.2	MA0079.2	0.283
MA0080.2	MA0080.2	0.66
MA0081.1	MA0081.1	0.961
MA0083.1	MA0083.1	0.0276
MA0084.1	MA0084.1	0.381
MA0087.1	MA0087.1	0.339
MA0088.1	MA0088.1	0.171
MA0090.1	MA0090.1	6.74659e-4
MA0091.1	MA0091.1	0.495
MA0092.1	MA0092.1	0.552
MA0093.1	MA0093.1	0.853
MA0099.2	MA0099.2	1.41547e-22
MA0100.1	MA0100.1	0.343
MA0101.1	MA0101.1	5.37731e-4
MA0102.2	MA0102.2	0.342
MA0103.1	MA0103.1	3.46132e-6
MA0104.2	MA0104.2	0.73
MA0105.1	MA0105.1	0.329
MA0106.1	MA0106.1	1.30737e-4
MA0107.1	MA0107.1	0.00866
MA0108.2	MA0108.2	0.398
MA0111.1	MA0111.1	0.693
MA0112.2	MA0112.2	0.00813
MA0113.1	MA0113.1	0.341
MA0114.1	MA0114.1	0.906
MA0115.1	MA0115.1	0.418
MA0116.1	MA0116.1	0.178
MA0117.1	MA0117.1	0.697
MA0119.1	MA0119.1	0.616
MA0122.1	MA0122.1	0.798
MA0124.1	MA0124.1	0.261
MA0125.1	MA0125.1	0.0311
MA0131.1	MA0131.1	0.194
MA0135.1	MA0135.1	0.0675
MA0136.1	MA0136.1	0.00671
MA0137.2	MA0137.2	0.0254
MA0138.2	MA0138.2	0.0238
MA0139.1	MA0139.1	0.514
MA0140.1	MA0140.1	2.98616e-5
MA0141.1	MA0141.1	0.759
MA0142.1	MA0142.1	0.238
MA0143.1	MA0143.1	0.278
MA0144.1	MA0144.1	0.113
MA0145.1	MA0145.1	0.0964
MA0146.1	MA0146.1	0.194
MA0147.1	MA0147.1	0.45
MA0148.1	MA0148.1	0.332
MA0149.1	MA0149.1	0.00402
MA0150.1	MA0150.1	0.00147
MA0152.1	MA0152.1	0.171
MA0153.1	MA0153.1	0.00797
MA0154.1	MA0154.1	0.617
MA0155.1	MA0155.1	0.432
MA0156.1	MA0156.1	0.00183
MA0157.1	MA0157.1	0.754
MA0159.1	MA0159.1	0.0012
MA0160.1	MA0160.1	0.858
MA0162.1	MA0162.1	0.405
MA0163.1	MA0163.1	0.0414
MA0164.1	MA0164.1	0.179
MA0258.1	MA0258.1	0.0528
MA0259.1	MA0259.1	0.608

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13739

Novel motif	Logo	P-value
1	1	0.383
10	10	0.0294
100	100	0.314
101	101	0.0334
102	102	0.193
103	103	0.0572
104	104	0.841
105	105	0.488
106	106	0.18
107	107	0.95
108	108	0.56
109	109	0.0127
11	11	0.294
110	110	0.119
111	111	0.143
112	112	0.977
113	113	0.277
114	114	0.552
115	115	0.668
116	116	0.0606
117	117	0.002
118	118	0.706
119	119	0.369
12	12	0.542
120	120	0.543
121	121	0.743
122	122	0.126
123	123	0.0673
124	124	0.798
125	125	0.0481
126	126	0.835
127	127	0.931
128	128	0.306
129	129	0.993
13	13	5.31053e-7
130	130	0.468
131	131	0.12
132	132	0.419
133	133	0.0339
134	134	0.291
135	135	0.0516
136	136	0.0147
137	137	0.811
138	138	0.178
139	139	0.361
14	14	0.624
140	140	0.434
141	141	0.479
142	142	0.89
143	143	0.386
144	144	0.232
145	145	0.0233
146	146	0.401
147	147	0.446
148	148	0.481
149	149	0.142
15	15	0.201
150	150	0.342
151	151	0.657
152	152	0.0266
153	153	0.3
154	154	0.365
155	155	0.418
156	156	0.00329
157	157	0.598
158	158	0.555
159	159	0.305
160	160	0.925
161	161	0.742
162	162	0.247
163	163	0.713
164	164	0.0437
165	165	0.225
166	166	0.891
167	167	0.732
168	168	0.46
169	169	0.0523
17	17	0.143
18	18	0.665
19	19	0.604
2	2	0.129
20	20	0.0435
21	21	0.162
22	22	0.611
23	23	0.758
24	24	0.15
25	25	0.972
26	26	0.00927
27	27	0.566
28	28	0.665
29	29	4.71433e-4
3	3	0.146
30	30	0.457
31	31	0.438
32	32	0.0844
33	33	0.0536
34	34	0.263
35	35	0.918
36	36	0.0642
37	37	0.0395
38	38	0.767
39	39	0.062
4	4	0.149
40	40	0.0401
41	41	0.126
42	42	0.412
43	43	0.67
44	44	0.281
45	45	0.803
46	46	0.25
47	47	0.533
48	48	0.471
49	49	0.669
5	5	0.86
50	50	0.629
51	51	0.808
52	52	0.914
53	53	0.163
54	54	0.825
55	55	0.905
56	56	0.937
57	57	0.23
58	58	0.685
59	59	0.817
6	6	0.876
60	60	0.401
61	61	0.154
62	62	0.518
63	63	0.228
64	64	0.762
65	65	0.603
66	66	0.301
67	67	0.252
68	68	0.304
69	69	0.496
7	7	0.184
70	70	0.00866
71	71	0.00986
72	72	0.849
73	73	6.04833e-4
74	74	0.243
75	75	0.0158
76	76	0.289
77	77	0.508
78	78	0.00199
79	79	0.233
8	8	0.196
80	80	0.0383
81	81	0.692
82	82	0.771
83	83	0.431
84	84	0.916
85	85	0.926
86	86	0.326
87	87	0.0274
88	88	0.852
89	89	0.712
9	9	0.827
90	90	0.337
91	91	0.306
92	92	0.898
93	93	0.844
94	94	0.46
95	95	0.00183
96	96	0.663
97	97	0.893
98	98	0.318
99	99	0.672

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13739

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011232 mouse tracheal ciliated cells differentiation after 0hr sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000307 (tracheal epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000350 (experimentally modified sample)
0000357 (0 hr sample)
0000645 (tracheal ciliated cell differentiation sample)
0000652 (tracheal ciliated cell line sample)
0011232 (mouse tracheal ciliated cells differentiation after 0hr sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
CL:0000377 (tracheoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004953
-|accession_numbers=CAGE;DRX008911;DRR009785;DRZ001210;DRZ002593
+|accession_numbers=CAGE;DRX008911;DRR009785;DRZ001210;DRZ002593;DRZ012560;DRZ013943
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000307
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
+|donor= biol_rep1
 |expression_enrichment_score=chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.88!95.26!Zbtb11;;chr19:5447886..5447905,+!p1@Fosl1!1.81!64.30!Fosl1;;chr13:31650185..31650201,+!p1@Foxq1!1.72!171.24!Foxq1;;chr12:58646974..58647003,-!p1@Foxa1!1.57!47.41!Foxa1;;chr1:137155026..137155042,-!p1@Elf3!1.55!193.76!Elf3;;chr2:103143336..103143367,-!p1@Ehf!1.50!49.36!Ehf;;chr10:119913278..119913298,-!p2@Hmga2!1.42!54.99!Hmga2;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!1.40!58.24!Hmga1;;chr19:5447692..5447711,+!p2@Fosl1!1.39!23.38!Fosl1;;chr13:72766279..72766296,+!p2@Irx2!1.31!28.79!Irx2;;chr14:118636214..118636235,-!p1@Sox21!1.30!22.95!Sox21;;chr3:34548909..34548927,+!p1@Sox2!1.29!31.39!Sox2;;chr13:72101178..72101203,-!p1@Irx1!1.22!24.25!Irx1;;chr5:77543897..77543911,-!p2@Hopx!1.20!28.58!Hopx;;chr6:108610766..108610781,+!p2@Bhlhe40!1.20!26.63!Bhlhe40;;chr13:72766250..72766273,+!p1@Irx2!1.20!23.16!Irx2;;chr16:25801993..25802014,+!p1@Trp63!1.20!14.94!Trp63;;chr8:87502608..87502623,-!p1@Junb!1.19!233.16!Junb;;chr9:96653072..96653154,-!p1@Zbtb38!1.19!38.97!Zbtb38;;chr16:92697560..92697592,-!p2@Runx1!1.16!83.35!Runx1;;chr1:194979315..194979359,+!p1@Irf6!1.16!82.27!Irf6;;chr10:119913310..119913366,-!p1@Hmga2!1.13!98.29!Hmga2;;chr15:79178060..79178074,+!p2@Maff!1.12!15.80!Maff;;chr14:118636238..118636257,-!p2@Sox21!1.10!11.69!Sox21;;chr15:79178013..79178028,+!p3@Maff!1.09!14.72!Maff;;chr15:79177964..79177986,+!p1@Maff!1.08!38.10!Maff;;chr12:57796615..57796687,+!p1@Pax9!1.04!9.96!Pax9;;chr1:193007123..193007139,-!p1@Atf3!1.03!54.56!Atf3;;chr11:21901608..21901634,-!p1@Otx1!1.03!9.74!Otx1;;chr2:30700881..30700916,+!p1@Prrx2!0.98!16.45!Prrx2;;chr1:194979361..194979373,+!p2@Irf6!0.98!11.69!Irf6;;chr15:79178029..79178044,+!p4@Maff!0.98!10.61!Maff;;chr8:94881733..94881790,+!p1@Irx5!0.92!14.72!Irx5;;chr11:21901587..21901604,-!p2@Otx1!0.92!7.36!Otx1;;chr16:92697354..92697362,-!p3@Runx1!0.91!11.26!Runx1;;chr12:74147689..74147711,-!p1@Six1!0.90!15.80!Six1;;chr19:25746898..25746910,+!p1@Dmrt2!0.90!10.39!Dmrt2;;chr6:128250471..128250519,-!p1@Tead4!0.87!13.21!Tead4;;chr2:30700788..30700824,+!p2@Prrx2!0.87!9.96!Prrx2;;chr14:118635860..118635885,-!p3@Sox21!0.87!6.49!Sox21;;chr16:8672238..8672254,-!p2@Carhsp1,p2@Gm9791!0.86!8.88!Carhsp1;;chr13:72101141..72101158,-!p3@Irx1!0.86!8.01!Irx1;;chr11:69468531..69468557,+!p1@Sox15!0.86!6.28!Sox15;;chr8:77540128..77540145,+!p2@Hmgxb4!0.85!6.06!Hmgxb4;;chr15:35225845..35225867,+!p1@Osr2!0.84!15.80!Osr2;;chr17:71200415..71200427,-!p5@Tgif1!0.84!9.96!Tgif1;;chr3:34548946..34548972,+!p2@Sox2!0.84!6.71!Sox2;;chr10:119913266..119913277,-!p6@Hmga2!0.84!5.85!Hmga2;;chr12:57636220..57636236,-!p3@Nkx2-1!0.84!5.85!Nkx2-1;;chr16:55966451..55966484,+!p3@Rpl24,p3@Zbtb11!0.83!36.15!Zbtb11;;chr15:101097270..101097290,+!p1@Nr4a1!0.82!61.92!Nr4a1;;chr6:52154414..52154462,-!p1@Hoxa5!0.82!8.01!Hoxa5;;chr17:27693746..27693759,+!p6@Hmga1-rs1,p7@Hmga1!0.81!11.26!Hmga1;;chr11:116196664..116196679,-!p1@Foxj1!0.81!8.66!Foxj1;;chr2:103143315..103143328,-!p2@Ehf!0.81!5.41!Ehf;;chr1:194979383..194979393,+!p3@Irf6!0.81!5.41!Irf6;;chr15:37162834..37162849,+!p2@Grhl2!0.80!6.49!Grhl2;;chr19:46379199..46379301,+!p1@Nfkb2!0.79!31.61!Nfkb2;;chr16:18587076..18587106,-!p1@Tbx1!0.79!7.58!Tbx1;;chr13:72101161..72101177,-!p2@Irx1!0.79!7.36!Irx1;;chr13:40826961..40827001,-!p4@Tfap2a!0.78!4.98!Tfap2a;;chr2:30700857..30700873,+!p3@Prrx2!0.77!6.93!Prrx2;;chr7:20162663..20162678,+!p1@Zfp296!0.76!6.49!Zfp296;;chr1:36364590..36364608,+!p1@Arid5a!0.75!52.39!Arid5a;;chr7:20214704..20214800,-!p1@Relb!0.73!15.80!Relb;;chr8:94325321..94325366,-!p1@Irx3!0.73!11.47!Irx3;;chr14:99697871..99697934,+!p1@Klf5!0.72!94.39!Klf5;;chr6:51382677..51382783,+!p1@Nfe2l3!0.71!11.69!Nfe2l3;;chr6:52141694..52141715,-!p1@Hoxa4!0.71!5.41!Hoxa4;;chr6:52154386..52154407,-!p2@Hoxa5!0.71!5.41!Hoxa5;;chr8:94325273..94325288,-!p5@Irx3!0.70!5.20!Irx3;;chr8:94325814..94325839,-!p2@Irx3!0.69!8.88!Irx3;;chr13:5860872..5860883,+!p3@Klf6!0.69!8.44!Klf6;;chr17:32506357..32506377,-!p3@Wiz!0.68!8.66!Wiz;;chrX:48559194..48559210,-!p4@Mbnl3!0.68!4.98!Mbnl3;;chr13:5860776..5860796,+!p1@Klf6!0.67!103.92!Klf6;;chr14:17407878..17407926,-!p1@Rarb!0.67!9.09!Rarb;;chr17:86087592..86087615,-!p1@Six2!0.67!3.68!Six2;;chr6:146744595..146744613,+!p2@Arntl2!0.66!6.49!Arntl2;;chr6:108610610..108610676,+!p1@Bhlhe40!0.65!198.74!Bhlhe40;;chr17:71200529..71200556,-!p1@Tgif1!0.65!65.81!Tgif1;;chr11:101646566..101646603,-!p1@Etv4!0.65!12.77!Etv4;;chr15:37162796..37162828,+!p1@Grhl2!0.65!6.28!Grhl2;;chr8:77540157..77540170,+!p3@Hmgxb4!0.65!3.46!Hmgxb4;;chr18:3281034..3281104,-!p1@Crem!0.64!27.71!Crem;;chr1:69732511..69732540,-!p2@Ikzf2!0.64!4.55!Ikzf2;;chr15:61817095..61817111,+!p1@Myc!0.63!233.38!Myc;;chr19:5637528..5637548,+!p2@Rela!0.63!22.52!Rela;;chr6:128250380..128250442,-!p2@Tead4!0.63!4.33!Tead4;;chr19:5560600..5560617,-!p1@Ovol1!0.63!4.11!Ovol1;;chr14:118636183..118636192,-!p4@Sox21!0.63!3.25!Sox21;;chr12:57636178..57636194,-!p2@Nkx2-1!0.63!3.25!Nkx2-1;;chr13:40825465..40825469,-!p2@Tfap2a!0.63!3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 |ffid_belonging_in_development=CL:0000223,CL:0000377
@@ Line 45: / Line 46: @@
 |is_obsolete=
 |library_id=CNhs13739
-|library_id_phase_based=1:CNhs13739
+|library_id_phase_based=2:CNhs13739
-|name=Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;13367
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;13367
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/Tracheal%2520epithelial%2520cells%252c%2520differentiation%2520to%2520ciliated%2520epithelial%2520cells%252c%2520000hr%252c%2520biol_rep1.CNhs13739.13367-143G1.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/Tracheal%2520epithelial%2520cells%252c%2520differentiation%2520to%2520ciliated%2520epithelial%2520cells%252c%2520000hr%252c%2520biol_rep1.CNhs13739.13367-143G1.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/Tracheal%2520epithelial%2520cells%252c%2520differentiation%2520to%2520ciliated%2520epithelial%2520cells%252c%2520000hr%252c%2520biol_rep1.CNhs13739.13367-143G1.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/Tracheal%2520epithelial%2520cells%252c%2520differentiation%2520to%2520ciliated%2520epithelial%2520cells%252c%2520000hr%252c%2520biol_rep1.CNhs13739.13367-143G1.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/Tracheal%2520epithelial%2520cells%252c%2520differentiation%2520to%2520ciliated%2520epithelial%2520cells%252c%2520000hr%252c%2520biol_rep1.CNhs13739.13367-143G1.mm9.nobarcode.rdna.fa.gz
+|name=Tracheal epithelial cells, differentiation to ciliated epithelial cells
 |namespace=
 |part_of=
@@ Line 65: / Line 75: @@
 |rna_sample_type=total RNA
 |rna_tube_id=143G1
-|rna_weight_ug=4.20
+|rna_weight_ug=4.2
 |sample_age=
 |sample_category=time courses
@@ Line 86: / Line 96: @@
 |sample_strain=C57BL/6J
 |sample_tissue=
-|timecourse=Ciliated_epithelium_timecourse
+|time= 000hr
+|timecourse=Tracheal_to_ciliated_epithelium
 |top_motifs=
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:13367-143G1;search_select_hide=table117:13367-143G1
 }}

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FF:13367-143G1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:57, 4 June 2020

CNhs13739

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0