FF:693-20I5: Difference between revisions

Latest revision as of 19:19, 4 June 2020

Name:	skin, neonate N06
Species:	Mouse (Mus musculus)
Library ID:	CNhs11097
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	skin
dev stage	6 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005816

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11097		CAGE		DRX009080		DRR009954

Accession ID Mm9

Library id		BAM		CTSS
CNhs11097		DRZ001379		DRZ002762

Accession ID Mm10

Library id		BAM		CTSS
CNhs11097		DRZ012729		DRZ014112

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11097

0	0
1	0
10	0
100	0
1000	0.0922
1001	0
1002	0.049
1003	0.148
1004	0
1005	0
1006	-0.033
1007	0.0725
1008	0
1009	0.219
101	0.0515
1010	0
1011	-0.0324
1012	0
1013	-0.0663
1014	0.00563
1015	-0.0612
1016	-0.0346
1017	0
1018	0.626
1019	0
102	0
1020	0
1021	0
1022	0.0728
1023	0
1024	0.133
1025	-0.0122
1026	0
1027	0
1028	0
1029	0.0586
103	0.507
1030	0
1031	0.128
1032	-0.0533
1033	-0.0262
1034	0.049
1035	0
1036	-0.00147
1037	0
1038	-0.00712
1039	-0.131
104	0
1040	0.126
1041	0.498

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11097

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.931
MA0003.1	MA0003.1	0.481
MA0004.1	MA0004.1	0.805
MA0006.1	MA0006.1	0.0517
MA0007.1	MA0007.1	0.683
MA0009.1	MA0009.1	0.0311
MA0014.1	MA0014.1	0.295
MA0017.1	MA0017.1	2.49169e-6
MA0018.2	MA0018.2	0.0266
MA0019.1	MA0019.1	0.0588
MA0024.1	MA0024.1	0.54
MA0025.1	MA0025.1	0.677
MA0027.1	MA0027.1	0.884
MA0028.1	MA0028.1	1.93207e-4
MA0029.1	MA0029.1	0.429
MA0030.1	MA0030.1	0.411
MA0031.1	MA0031.1	0.523
MA0035.2	MA0035.2	0.00147
MA0038.1	MA0038.1	0.248
MA0039.2	MA0039.2	7.87253e-4
MA0040.1	MA0040.1	0.0264
MA0041.1	MA0041.1	0.188
MA0042.1	MA0042.1	0.715
MA0043.1	MA0043.1	0.298
MA0046.1	MA0046.1	6.54956e-18
MA0047.2	MA0047.2	0.194
MA0048.1	MA0048.1	0.121
MA0050.1	MA0050.1	0.0076
MA0051.1	MA0051.1	0.0658
MA0052.1	MA0052.1	0.00542
MA0055.1	MA0055.1	9.46352e-4
MA0057.1	MA0057.1	0.117
MA0058.1	MA0058.1	0.51
MA0059.1	MA0059.1	0.394
MA0060.1	MA0060.1	0.89
MA0061.1	MA0061.1	0.144
MA0062.2	MA0062.2	5.4432e-7
MA0065.2	MA0065.2	0.107
MA0066.1	MA0066.1	0.465
MA0067.1	MA0067.1	0.752
MA0068.1	MA0068.1	0.484
MA0069.1	MA0069.1	0.867
MA0070.1	MA0070.1	0.753
MA0071.1	MA0071.1	0.0578
MA0072.1	MA0072.1	0.962
MA0073.1	MA0073.1	0.607
MA0074.1	MA0074.1	0.19
MA0076.1	MA0076.1	2.7022e-4
MA0077.1	MA0077.1	0.576
MA0078.1	MA0078.1	0.123
MA0079.2	MA0079.2	0.0317
MA0080.2	MA0080.2	2.22316e-6
MA0081.1	MA0081.1	0.00136
MA0083.1	MA0083.1	0.113
MA0084.1	MA0084.1	0.631
MA0087.1	MA0087.1	0.707
MA0088.1	MA0088.1	0.666
MA0090.1	MA0090.1	0.00444
MA0091.1	MA0091.1	0.555
MA0092.1	MA0092.1	0.0801
MA0093.1	MA0093.1	0.706
MA0099.2	MA0099.2	3.33529e-15
MA0100.1	MA0100.1	0.0629
MA0101.1	MA0101.1	0.365
MA0102.2	MA0102.2	0.225
MA0103.1	MA0103.1	0.00177
MA0104.2	MA0104.2	0.153
MA0105.1	MA0105.1	0.207
MA0106.1	MA0106.1	0.0136
MA0107.1	MA0107.1	0.43
MA0108.2	MA0108.2	4.63043e-51
MA0111.1	MA0111.1	0.96
MA0112.2	MA0112.2	0.612
MA0113.1	MA0113.1	0.0173
MA0114.1	MA0114.1	1.87416e-5
MA0115.1	MA0115.1	1.78274e-4
MA0116.1	MA0116.1	0.646
MA0117.1	MA0117.1	0.513
MA0119.1	MA0119.1	0.593
MA0122.1	MA0122.1	0.522
MA0124.1	MA0124.1	0.523
MA0125.1	MA0125.1	6.38918e-5
MA0131.1	MA0131.1	0.482
MA0135.1	MA0135.1	0.0675
MA0136.1	MA0136.1	1.07484e-6
MA0137.2	MA0137.2	0.254
MA0138.2	MA0138.2	0.827
MA0139.1	MA0139.1	0.364
MA0140.1	MA0140.1	0.00105
MA0141.1	MA0141.1	1.7393e-4
MA0142.1	MA0142.1	0.542
MA0143.1	MA0143.1	0.316
MA0144.1	MA0144.1	0.786
MA0145.1	MA0145.1	0.0525
MA0146.1	MA0146.1	0.275
MA0147.1	MA0147.1	0.0982
MA0148.1	MA0148.1	0.235
MA0149.1	MA0149.1	0.308
MA0150.1	MA0150.1	0.833
MA0152.1	MA0152.1	0.533
MA0153.1	MA0153.1	3.63679e-12
MA0154.1	MA0154.1	0.467
MA0155.1	MA0155.1	0.794
MA0156.1	MA0156.1	3.88507e-6
MA0157.1	MA0157.1	0.0485
MA0159.1	MA0159.1	0.0538
MA0160.1	MA0160.1	0.00384
MA0162.1	MA0162.1	0.568
MA0163.1	MA0163.1	0.551
MA0164.1	MA0164.1	0.226
MA0258.1	MA0258.1	0.396
MA0259.1	MA0259.1	0.254

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11097

Novel motif	Logo	P-value
1	1	0.846
10	10	0.964
100	100	0.681
101	101	0.653
102	102	0.286
103	103	0.443
104	104	0.0494
105	105	0.539
106	106	0.0181
107	107	0.0222
108	108	0.511
109	109	0.97
11	11	0.97
110	110	0.919
111	111	0.485
112	112	0.659
113	113	0.916
114	114	0.641
115	115	0.268
116	116	0.719
117	117	0.55
118	118	0.102
119	119	0.835
12	12	0.792
120	120	0.924
121	121	0.733
122	122	0.864
123	123	0.991
124	124	0.357
125	125	0.872
126	126	0.688
127	127	0.969
128	128	0.0716
129	129	0.89
13	13	0.0285
130	130	0.578
131	131	0.21
132	132	0.963
133	133	0.432
134	134	0.673
135	135	0.108
136	136	0.137
137	137	0.473
138	138	0.156
139	139	0.322
14	14	0.43
140	140	0.125
141	141	0.846
142	142	0.452
143	143	0.574
144	144	0.615
145	145	0.205
146	146	0.649
147	147	0.133
148	148	0.243
149	149	0.476
15	15	0.101
150	150	0.237
151	151	0.711
152	152	0.0114
153	153	0.733
154	154	0.478
155	155	0.968
156	156	3.76453e-4
157	157	0.0391
158	158	0.223
159	159	0.0327
160	160	0.236
161	161	0.356
162	162	0.846
163	163	0.737
164	164	0.574
165	165	0.347
166	166	0.369
167	167	0.0159
168	168	0.533
169	169	0.0549
17	17	0.0404
18	18	0.306
19	19	0.333
2	2	0.0419
20	20	0.117
21	21	0.412
22	22	0.463
23	23	0.0627
24	24	0.723
25	25	0.253
26	26	0.00238
27	27	0.842
28	28	0.948
29	29	0.353
3	3	0.793
30	30	0.0273
31	31	0.279
32	32	0.701
33	33	0.896
34	34	0.769
35	35	0.0186
36	36	0.0437
37	37	0.576
38	38	0.997
39	39	0.0347
4	4	0.916
40	40	0.596
41	41	0.71
42	42	0.653
43	43	0.935
44	44	0.444
45	45	0.357
46	46	0.521
47	47	0.858
48	48	0.95
49	49	0.409
5	5	0.341
50	50	0.603
51	51	0.861
52	52	0.0661
53	53	0.214
54	54	0.536
55	55	0.279
56	56	0.889
57	57	0.47
58	58	0.888
59	59	0.378
6	6	0.478
60	60	0.0602
61	61	0.513
62	62	0.776
63	63	0.591
64	64	0.501
65	65	0.782
66	66	0.671
67	67	0.6
68	68	0.045
69	69	0.0618
7	7	0.507
70	70	0.435
71	71	0.513
72	72	0.775
73	73	0.101
74	74	0.823
75	75	0.509
76	76	0.00315
77	77	0.0594
78	78	0.0152
79	79	0.826
8	8	0.46
80	80	0.17
81	81	0.432
82	82	0.837
83	83	0.379
84	84	0.674
85	85	0.0797
86	86	0.127
87	87	0.0333
88	88	0.735
89	89	0.368
9	9	0.403
90	90	0.857
91	91	0.799
92	92	0.781
93	93	0.548
94	94	0.369
95	95	0.351
96	96	0.819
97	97	0.0655
98	98	0.881
99	99	0.107

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11097

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011406 mouse skin- neonate N06 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000014 (zone of skin)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0007029 (surface)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000312 (mouse neonate N6 sample)
0011406 (mouse skin- neonate N06 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008943
+|DRA_sample_Accession=CAGE@SAMD00005816
-|accession_numbers=CAGE;DRX009080;DRR009954;DRZ001379;DRZ002762
+|accession_numbers=CAGE;DRX009080;DRR009954;DRZ001379;DRZ002762;DRZ012729;DRZ014112
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000014,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0007029,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:94981424..94981439,+!p1@Dlx3!2.39!273.96!Dlx3;;chr15:102751603..102751630,+!p1@Hoxc13!2.13!134.29!Hoxc13;;chr13:53568104..53568156,-!p1@Msx2!2.11!185.98!Msx2;;chr11:121380640..121380655,-!p1@Zfp750!2.09!195.05!Zfp750;;chr16:25801993..25802014,+!p1@Trp63!2.03!107.32!Trp63;;chr2:9800207..9800234,-!p1@Gata3!1.85!204.48!Gata3;;chr9:31720843..31720888,-!p1@Barx2!1.81!70.07!Barx2;;chr11:121380594..121380609,-!p2@Zfp750!1.80!104.09!Zfp750;;chr19:5560600..5560617,-!p1@Ovol1!1.79!73.41!Ovol1;;chr5:77543897..77543911,-!p2@Hopx!1.78!109.23!Hopx;;chr11:96880072..96880079,+!p1@Sp6!1.74!53.48!Sp6;;chr4:46356509..46356527,+!p1@Foxe1!1.70!48.82!Foxe1;;chr14:118636214..118636235,-!p1@Sox21!1.69!57.78!Sox21;;chr13:72766250..72766273,+!p1@Irx2!1.66!68.28!Irx2;;chr11:121380611..121380625,-!p3@Zfp750!1.64!51.57!Zfp750;;chr19:5560570..5560582,-!p2@Ovol1!1.64!42.62!Ovol1;;chr4:135129538..135129558,-!p1@Grhl3!1.60!57.42!Grhl3;;chr13:40829137..40829205,-!p1@Tfap2a!1.58!41.78!Tfap2a;;chr12:25257141..25257173,+!p1@Grhl1!1.51!63.39!Grhl1;;chr9:43013917..43013968,-!p1@Pou2f3!1.48!29.13!Pou2f3;;chr13:72766279..72766296,+!p2@Irx2!1.46!41.18!Irx2;;chr11:78200071..78200100,-!p1@Foxn1!1.46!27.93!Foxn1;;chr2:172375081..172375105,+!p1@Tfap2c!1.45!26.98!Tfap2c;;chr15:102751578..102751600,+!p2@Hoxc13!1.40!23.87!Hoxc13;;chr2:38206580..38206600,+!p2@Lhx2!1.38!28.53!Lhx2;;chr12:25257265..25257294,+!p2@Grhl1!1.37!22.68!Grhl1;;chr5:77543935..77543947,-!p4@Hopx!1.36!22.08!Hopx;;chr13:53568191..53568219,-!p2@Msx2!1.35!21.25!Msx2;;chr10:44178521..44178557,-!p1@Prdm1!1.34!36.89!Prdm1;;chr13:40825465..40825469,-!p2@Tfap2a!1.34!20.77!Tfap2a;;chr15:97738692..97738747,-!p1@Vdr!1.33!109.94!Vdr;;chr2:71384802..71384815,-!p1@Dlx2!1.31!23.87!Dlx2;;chr3:99057269..99057306,+!p1@Tbx15!1.31!23.40!Tbx15;;chr16:18587076..18587106,-!p1@Tbx1!1.30!27.10!Tbx1;;chr7:19946556..19946611,+!p1@Ppp1r13l!1.28!70.43!Ppp1r13l;;chr13:40826961..40827001,-!p4@Tfap2a!1.28!17.91!Tfap2a;;chr12:34642510..34642530,+!p1@Twist1!1.27!55.63!Twist1;;chr12:25257176..25257190,+!p3@Grhl1!1.27!19.82!Grhl1;;chr17:14011485..14011507,+!p2@Mllt4!1.26!17.07!Mllt4;;chr4:148178559..148178603,+!p1@Casz1!1.22!44.41!Casz1;;chr6:51382677..51382783,+!p1@Nfe2l3!1.21!38.44!Nfe2l3;;chr17:14011569..14011589,+!p8@Mllt4!1.21!15.16!Mllt4;;chr2:38206744..38206766,+!p1@Lhx2!1.20!17.79!Lhx2;;chr13:53568081..53568094,-!p3@Msx2!1.19!14.56!Msx2;;chr10:67000609..67000625,+!p1@Egr2!1.17!31.99!Egr2;;chr2:103251839..103251853,+!p5@Elf5!1.15!13.13!Elf5;;chr5:38215819..38215823,-!p1@Msx1!1.14!33.54!Msx1;;chr4:124334894..124334899,+!p1@Pou3f1!1.12!16.00!Pou3f1;;chr17:14011545..14011564,+!p6@Mllt4!1.12!12.30!Mllt4;;chr4:55545337..55545357,-!p1@Klf4!1.11!172.97!Klf4;;chr15:102087880..102087927,-!p2@Rarg!1.11!27.58!Rarg;;chr1:19199236..19199258,+!p1@Tfap2b!1.11!11.94!Tfap2b;;chr3:130813200..130813252,+!p1@Lef1!1.09!50.97!Lef1;;chr13:73397958..73397994,+!p1@Irx4!1.09!11.34!Irx4;;chr2:103143336..103143367,-!p1@Ehf!1.07!17.67!Ehf;;chr13:31650185..31650201,+!p1@Foxq1!1.04!35.57!Foxq1;;chr12:25257114..25257131,+!p4@Grhl1!1.04!13.13!Grhl1;;chr11:76485958..76485963,+!p1@Bhlha9!1.03!9.67!Bhlha9;;chr17:14011529..14011544,+!p7@Mllt4!1.03!9.67!Mllt4;;chr13:53568169..53568179,-!p4@Msx2!1.02!9.55!Msx2;;chr9:69137716..69137744,+!p1@Rora!1.01!59.69!Rora;;chr12:25257298..25257323,+!p5@Grhl1!1.01!9.31!Grhl1;;chr15:102828658..102828678,+!p1@Hoxc6!1.01!9.19!Hoxc6;;chr9:31721051..31721068,-!p3@Barx2!1.01!9.19!Barx2;;chr1:194979315..194979359,+!p1@Irf6!1.00!56.11!Irf6;;chr1:194979361..194979373,+!p2@Irf6!1.00!12.18!Irf6;;chr14:70477113..70477173,+!p1@Egr3!1.00!8.95!Egr3;;chr13:40829337..40829360,-!p5@Tfap2a!0.99!8.71!Tfap2a;;chr13:31898729..31898761,+!p1@Foxc1!0.97!20.89!Foxc1;;chr13:72101178..72101203,-!p1@Irx1!0.97!13.13!Irx1;;chr10:44178493..44178520,-!p3@Prdm1!0.97!11.70!Prdm1;;chr6:52176164..52176195,-!p1@Hoxa9!0.97!10.50!Hoxa9;;chr11:106128936..106128955,-!p4@Smarcd2!0.96!9.55!Smarcd2;;chr14:118636238..118636257,-!p2@Sox21!0.96!8.12!Sox21;;chr15:103170533..103170556,-!p1@Zfp385a!0.94!29.37!Zfp385a;;chr6:97941770..97941784,+!p4@Mitf!0.94!7.64!Mitf;;chr12:109242266..109242295,-!p1@Bcl11b!0.93!66.01!Bcl11b;;chr7:6649134..6649167,-!p1@Zim1!0.93!42.14!Zim1;;chr15:35225845..35225867,+!p1@Osr2!0.93!19.58!Osr2;;chr10:126778916..126778974,-!p1@Gli1!0.93!17.31!Gli1;;chr10:44178375..44178390,-!p2@Prdm1!0.93!10.39!Prdm1;;chr4:126413480..126413489,-!p1@Tfap2e!0.93!7.52!Tfap2e;;chr4:148178529..148178548,+!p3@Casz1!0.92!17.79!Casz1;;chr3:130813736..130813752,+!p3@Lef1!0.92!10.50!Lef1;;chr13:40824310..40824314,-!p6@Tfap2a!0.92!7.28!Tfap2a;;chr11:94981134..94981147,+!p2@Dlx3!0.92!7.28!Dlx3;;chr14:99697871..99697934,+!p1@Klf5!0.91!146.59!Klf5;;chr15:103170516..103170531,-!p2@Zfp385a!0.91!17.55!Zfp385a;;chr13:31898496..31898519,+!p3@Foxc1!0.91!11.70!Foxc1;;chr4:122673187..122673201,+!p2@Mycl1!0.90!12.53!Mycl1;;chr1:19202352..19202354,+!p2@Tfap2b!0.89!6.80!Tfap2b;;chr18:80909801..80909819,-!p1@Nfatc1!0.88!41.30!Nfatc1;;chr13:72766234..72766243,+!p3@Irx2!0.88!6.57!Irx2;;chr1:19199021..19199048,+!p8@Tfap2b!0.88!6.57!Tfap2b;;chr7:89137163..89137200,-!p1@Bnc1!0.86!7.64!Bnc1;;chr6:53523358..53523388,+!p1@Creb5!0.85!77.23!Creb5;;chr4:148275237..148275311,+!p2@Casz1!0.85!26.50!Casz1;;chr1:93698030..93698064,+!p1@Twist2!0.85!12.65!Twist2;;chr10:66998241..66998263,+!p2@Egr2!0.84!5.85!Egr2;;chr2:160192793..160192809,-!p1@Mafb!0.83!92.51!Mafb;;chr6:86619104..86619119,-!p1@Mxd1!0.82!48.70!Mxd1;;chr1:165243792..165243808,-!p1@Prrx1!0.82!21.13!Prrx1;;chr12:37835141..37835194,+!p1@Meox2!0.82!18.62!Meox2;;chr4:135129447..135129467,-!p2@Grhl3!0.82!6.80!Grhl3;;chr11:101646127..101646147,-!p5@Etv4!0.82!6.57!Etv4;;chr11:101646566..101646603,-!p1@Etv4!0.81!18.62!Etv4;;chr10:44178474..44178487,-!p4@Prdm1!0.81!8.12!Prdm1;;chr9:31720903..31720918,-!p2@Barx2!0.81!5.49!Barx2;;chr13:83643159..83643226,+!p3@Mef2c!0.80!5.25!Mef2c;;chr7:20162663..20162678,+!p1@Zfp296!0.79!7.04!Zfp296;;chr6:52167459..52167492,-!p1@Hoxa7!0.79!6.33!Hoxa7;;chr2:103143315..103143328,-!p2@Ehf!0.78!5.01!Ehf;;chr7:35904304..35904320,+!p1@Cebpa!0.77!110.54!Cebpa;;chr6:52167434..52167450,-!p3@Hoxa7!0.77!4.89!Hoxa7;;chr13:31898637..31898653,+!p2@Foxc1!0.76!8.83!Foxc1;;chr15:37163124..37163153,+!p3@Grhl2!0.76!4.77!Grhl2;;chr1:19199221..19199234,+!p6@Tfap2b!0.76!4.77!Tfap2b;;chr9:31720817..31720829,-!p5@Barx2!0.76!4.77!Barx2;;chr15:37162796..37162828,+!p1@Grhl2!0.75!8.12!Grhl2;;chr5:32438831..32438878,+!p1@Fosl2!0.74!51.57!Fosl2;;chr2:74542918..74542971,+!p1@Hoxd8!0.74!7.04!Hoxd8;;chr12:37835120..37835133,+!p2@Meox2!0.74!6.68!Meox2;;chr4:84321300..84321315,-!p2@Bnc2!0.74!5.61!Bnc2;;chr13:73398004..73398017,+!p2@Irx4!0.74!4.54!Irx4;;chr9:31720746..31720762,-!p4@Barx2!0.74!4.54!Barx2;;chr8:94881733..94881790,+!p1@Irx5!0.73!9.07!Irx5;;chr10:5636374..5636421,-!p1@Esr1!0.73!5.73!Esr1;;chr4:148178459..148178482,+!p4@Casz1!0.73!4.42!Casz1;;chr11:96143666..96143725,+!p1@Hoxb8!0.72!5.01!Hoxb8;;chr3:99044284..99044308,+!p4@Tbx15!0.72!4.30!Tbx15;;chr14:64562503..64562524,+!p1@Sox7!0.71!27.46!Sox7;;chr1:165243591..165243625,-!p2@Prrx1!0.71!6.57!Prrx1;;chr11:101646155..101646170,-!p3@Etv4!0.71!5.25!Etv4;;chr1:93698068..93698085,+!p2@Twist2!0.71!5.01!Twist2;;chr2:103252231..103252256,+!p4@Elf5!0.71!4.18!Elf5;;chr13:40826150..40826167,-!p3@Tfap2a!0.70!4.54!Tfap2a;;chr15:102751552..102751563,+!p3@Hoxc13!0.70!4.06!Hoxc13;;chr11:78200195..78200211,-!p2@Foxn1!0.70!4.06!Foxn1;;chr2:9800094..9800108,-!p3@Gata3!0.70!4.06!Gata3;;chr1:194979383..194979393,+!p3@Irf6!0.70!4.06!Irf6;;chr5:137042338..137042372,-!p5@Cux1!0.70!4.06!Cux1;;chr8:87502608..87502623,-!p1@Junb!0.69!72.34!Junb;;chr12:12948633..12948651,-!p1@Mycn!0.69!42.62!Mycn;;chr7:89137554..89137565,-!p2@Bnc1!0.69!3.94!Bnc1;;chr2:172375136..172375149,+!p2@Tfap2c!0.69!3.94!Tfap2c;;chr13:72101161..72101177,-!p2@Irx1!0.68!5.49!Irx1;;chr6:115372058..115372085,+!p3@Pparg!0.68!3.82!Pparg;;chr6:70906450..70906454,+!p1@Foxi3!0.68!3.82!Foxi3;;chr6:131338435..131338482,-!p1@Csda!0.67!406.70!Csda;;chr11:23980664..23980706,+!p2@Bcl11a!0.67!18.14!Bcl11a;;chr5:32438894..32438908,+!p2@Fosl2!0.67!8.59!Fosl2;;chr11:96153767..96153822,+!p1@Hoxb6!0.67!6.09!Hoxb6;;chr17:14011908..14011919,+!p13@Mllt4!0.67!3.70!Mllt4;;chr17:32506357..32506377,-!p3@Wiz!0.66!8.12!Wiz;;chr2:71367871..71367898,+!p1@Dlx1!0.66!3.58!Dlx1;;chr2:133377954..133377973,+!p1@Bmp2!0.65!12.53!Bmp2;;chr4:122673278..122673336,+!p1@Mycl1!0.65!12.41!Mycl1;;chr15:78994907..78994926,-!p1@Sox10!0.65!10.03!Sox10;;chr2:27532479..27532509,+!p3@Rxra!0.65!7.76!Rxra;;chr11:96147952..96147967,+!p1@Hoxb7!0.65!4.54!Hoxb7;;chr6:128250380..128250442,-!p2@Tead4!0.65!4.54!Tead4;;chr1:19199095..19199114,+!p5@Tfap2b!0.65!3.46!Tfap2b;;chr1:19199119..19199134,+!p4@Tfap2b!0.65!3.46!Tfap2b;;chr10:80599248..80599261,+!p3@Zbtb7a!0.64!6.45!Zbtb7a;;chr15:37162834..37162849,+!p2@Grhl2!0.64!4.18!Grhl2;;chr6:6832076..6832092,-!p1@Dlx5!0.64!4.06!Dlx5;;chr2:103251917..103251927,+!p9@Elf5!0.64!3.34!Elf5;;chr11:69468531..69468557,+!p1@Sox15!0.64!3.34!Sox15;;chr3:99057256..99057268,+!p3@Tbx15!0.64!3.34!Tbx15;;chr16:92697560..92697592,-!p2@Runx1!0.63!23.87!Runx1;;chr18:76219118..76219155,+!p1@Zbtb7c!0.63!6.33!Zbtb7c;;chr15:102087737..102087801,-!p3@Rarg!0.63!5.85!Rarg;;chr10:44178575..44178590,-!p5@Prdm1!0.63!4.18!Prdm1;;chr15:50721942..50721987,-!p13@Trps1!0.63!3.94!Trps1;;chr15:102751568..102751573,+!p4@Hoxc13!0.63!3.22!Hoxc13;;chr15:102820964..102821006,+!p1@Hoxc8!0.63!3.22!Hoxc8;;chr6:52161666..52161711,-!p1@Hoxa6!0.63!3.22!Hoxa6;;chr2:74543397..74543435,+!p2@Hoxd8!0.63!3.22!Hoxd8;;chr3:99057677..99057730,+!p2@Tbx15!0.63!3.22!Tbx15;;chr2:103264245..103264268,+!p2@Elf5!0.63!3.22!Elf5;;chr10:67375368..67375433,-!p1@Zfp365!0.62!6.09!Zfp365;;chr4:122911086..122911112,+!p1@Heyl!0.61!43.45!Heyl;;chr6:52190467..52190500,-!p1@Hoxa10!0.61!3.10!Hoxa10;;chr11:78317000..78317005,+!p1@Sebox!0.61!3.10!Sebox;;chr11:106128919..106128933,-!p8@Smarcd2!0.61!3.10!Smarcd2;;chr13:48356475..48356492,+!p1@Id4!0.60!79.62!Id4;;chr1:120950098..120950132,-!p2@Gli2!0.60!7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@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs11097
-|library_id_phase_based=1:CNhs11097
+|library_id_phase_based=2:CNhs11097
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;693
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;693
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N06.CNhs11097.693-20I5.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N06.CNhs11097.693-20I5.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N06.CNhs11097.693-20I5.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N06.CNhs11097.693-20I5.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N06.CNhs11097.693-20I5.mm9.nobarcode.rdna.fa.gz
 |name=skin, neonate N06
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11097,LSID733,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.0513269984940885,0,0,0,0.0489745727197172,0,0.17133017171633,0,0.0244872863598586,0,0,0.150237277253472,0,0,0,0,0,0,0.0992486906813309,0,0.084762183370313,0,0,0.0489745727197172,0.0489745727197172,0,0,0,0,0,0,0,0.203121206661678,0,0,0,0,0,0.0338805904494466,0,0.0631031338413672,0.15481216129821,-0.176886832857694,0,0,0,0,0,0,0.954143433068511,0,0,0,0,0,-0.0170309748437232,0.0489745727197172,0,0,0,0.0501348500697829,0,0.0256805034732585,0,0,0.0469719253530377,0.111511644561026,0.116057832386098,0.287604237611136,-0.00246131921756153,0,0.0986687398092135,0,0,0.0929818051526577,0,0.0310934612837701,-0.103593867772873,-0.0510015020886671,0.124435715265848,0,0,0,0,0,0,-0.050351473411983,0.0604650127506758,-0.0508810883535145,0,0,0,0,0
@@ Line 88: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:693-20I5;search_select_hide=table117:693-20I5
 }}

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FF:693-20I5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:19, 4 June 2020

CNhs11097

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0