FF:11874-125C2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005380 | ||
|accession_numbers=CAGE;DRX008148;DRR009020;DRZ000445;DRZ001830 | |accession_numbers=CAGE;DRX008148;DRR009020;DRZ000445;DRZ001830;DRZ011795;DRZ013180 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.56!3588.31!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.79!613.94!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.69!486.21!TFEC;;chr3:101546827..101546847,+!p2@NFKBIZ!2.45!392.18!NFKBIZ;;chr12:72056800..72056834,+!p1@THAP2!2.41!343.07!THAP2;;chr16:85932760..85932775,+!p1@IRF8!2.36!230.43!IRF8;;chr10:35484053..35484076,+!p1@CREM!2.33!509.31!CREM;;chr12:54778471..54778528,-!p1@ZNF385A!2.30!197.69!ZNF385A;;chr2:70142232..70142251,+!p1@MXD1!2.29!1040.77!MXD1;;chr10:64018918..64018936,+!p2@ZNF365!2.21!160.79!ZNF365;;chr9:102584159..102584174,+!p2@NR4A3!2.20!275.04!NR4A3;;chr9:102584262..102584276,+!p1@NR4A3!2.19!334.41!NR4A3;;chr14:35872453..35872485,-!p2@NFKBIA!2.18!356.23!NFKBIA;;chr10:64576105..64576133,-!p1@EGR2!2.14!274.39!EGR2;;chr19:45971246..45971265,+!p1@FOSB!2.11!2233.02!FOSB;;chr2:157189180..157189290,-!p1@NR4A2!2.08!591.79!NR4A2;;chr20:39317868..39317884,-!p1@MAFB!2.05!1246.17!MAFB;;chr3:101568349..101568365,+!p1@NFKBIZ!2.04!5213.49!NFKBIZ;;chr11:47399947..47399961,-!p3@SPI1!2.03!104.94!SPI1;;chr14:35873947..35873965,-!p1@NFKBIA!2.02!6092.20!NFKBIA;;chr6:106534192..106534224,+!p1@PRDM1!1.98!255.46!PRDM1;;chr2:192015701..192015743,-!p1@STAT4!1.97!123.56!STAT4;;chr21:34442439..34442455,+!p1@OLIG1!1.97!91.79!OLIG1;;chr11:47400062..47400077,-!p2@SPI1!1.96!89.54!SPI1;;chr16:31885093..31885165,+!p1@ZNF267!1.94!1231.73!ZNF267;;chr12:52445218..52445237,+!p1@NR4A1!1.94!1009.00!NR4A1;;chr4:103422499..103422632,+!p1@NFKB1!1.91!1554.26!NFKB1;;chr10:31288398..31288455,-!p2@ZNF438!1.90!90.50!ZNF438;;chrX:153305787..153305807,-!p3@MECP2!1.89!77.34!MECP2;;chr19:54041669..54041697,+!p2@ZNF331!1.89!76.70!ZNF331;;chr9:102584128..102584144,+!p3@NR4A3!1.87!137.04!NR4A3;;chr2:68592394..68592405,+!p2@PLEK!1.86!71.89!PLEK;;chr4:83822199..83822239,+!p2@THAP9!1.85!83.12!THAP9;;chr19:50432132..50432217,+!p2@ATF5!1.84!80.55!ATF5;;chr10:35484090..35484104,+!p6@CREM!1.82!65.79!CREM;;chr1:212782094..212782109,+!p1@ATF3!1.81!1602.08!ATF3;;chr12:72056773..72056796,+!p3@THAP2!1.81!81.84!THAP2;;chr19:54058073..54058088,+!p1@ZNF331!1.81!63.22!ZNF331;;chr8:22550982..22550999,-!p1@EGR3!1.80!169.45!EGR3;;chr22:38597987..38598021,+!p2@MAFF!1.79!348.53!MAFF;;chr12:72056749..72056767,+!p6@THAP2!1.79!66.75!THAP2;;chr11:47400032..47400043,-!p5@SPI1!1.79!60.66!SPI1;;chr19:36391434..36391450,-!p1@NFKBID!1.78!112.33!NFKBID;;chr10:31288370..31288393,-!p3@ZNF438!1.77!58.41!ZNF438;;chr2:61108695..61108753,+!p1@REL!1.76!371.31!REL;;chr10:51572408..51572454,+!p3@NCOA4!1.76!310.34!NCOA4;;chr2:145277640..145277771,-!p1@ZEB2!1.74!674.27!ZEB2;;chr2:145275162..145275202,-!p2@ZEB2!1.73!296.54!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.70!48.78!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!1.69!87.93!RUNX3;;chr21:36260295..36260310,-!p3@RUNX1!1.68!74.78!RUNX1;;chr9:102584241..102584261,+!p4@NR4A3!1.66!68.36!NR4A3;;chr6:391743..391759,+!p1@IRF4!1.66!44.29!IRF4;;chr20:48599506..48599526,+!p1@SNAI1!1.65!270.54!SNAI1;;chr6:106534230..106534254,+!p2@PRDM1!1.64!104.94!PRDM1;;chr21:30671690..30671762,+!p2@BACH1!1.62!132.54!BACH1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.59!439.99!ZC3H12A;;chr10:104155480..104155534,+!p2@NFKB2!1.59!236.20!NFKB2;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.89!PLAGL1;;chr9:102584278..102584285,+!p5@NR4A3!1.59!37.55!NR4A3;;chr4:106068026..106068084,+!p1@TET2!1.57!312.26!TET2;;chr6:15246200..15246214,+!p2@JARID2!1.57!97.56!JARID2;;chr8:123793988..123794016,+!p1@ZHX2!1.57!62.58!ZHX2;;chr21:34398234..34398250,+!p1@OLIG2!1.56!34.98!OLIG2;;chr12:54778351..54778378,-!p6@ZNF385A!1.56!34.98!ZNF385A;;chr10:51572339..51572376,+!p4@NCOA4!1.55!75.10!NCOA4;;chr10:104155659..104155676,+!p4@NFKB2!1.54!41.72!NFKB2;;chr11:47400045..47400060,-!p6@SPI1!1.54!33.70!SPI1;;chr6:12012170..12012245,+!p1@HIVEP1!1.53!158.86!HIVEP1;;chr9:129567282..129567353,+!p1@ZBTB43!1.52!405.01!ZBTB43;;chr14:35872494..35872511,-!p5@NFKBIA!1.51!41.72!NFKBIA;;chr13:41593425..41593480,-!p1@ELF1!1.50!188.06!ELF1;;chr10:104154246..104154347,+!p3@NFKB2!1.50!180.36!NFKB2;;chr7:50344289..50344323,+!p1@IKZF1!1.50!30.49!IKZF1;;chr21:30671235..30671253,+!p1@BACH1!1.49!360.72!BACH1;;chr6:44233252..44233296,-!p1@NFKBIE!1.49!283.06!NFKBIE;;chr12:96588219..96588263,+!p2@ELK3!1.49!205.72!ELK3;;chr6:12011943..12012015,+!p2@HIVEP1!1.49!92.43!HIVEP1;;chr12:48298765..48298783,-!p2@VDR!1.49!60.66!VDR;;chr7:106809470..106809481,+!p2@HBP1!1.49!41.40!HBP1;;chr21:30673091..30673135,+!p7@BACH1!1.49!30.17!BACH1;;chrX:129244454..129244488,-!p1@ELF4!1.48!200.90!ELF4;;chr4:103423079..103423112,+!p4@NFKB1!1.47!28.24!NFKB1;;chr2:97202480..97202499,+!p1@ARID5A!1.46!270.86!ARID5A;;chr1:38325227..38325246,-!p2@MTF1!1.45!36.91!MTF1;;chr6:126240442..126240459,+!p4@NCOA7!1.45!34.34!NCOA7;;chrX:153305962..153305995,-!p5@MECP2!1.45!27.28!MECP2;;chr12:96588368..96588394,+!p3@ELK3!1.44!69.32!ELK3;;chr8:80679993..80680011,-!p1@HEY1!1.44!37.87!HEY1;;chr2:70165961..70165981,+!p8@MXD1!1.43!25.67!MXD1;;chr4:106066712..106066728,+!p8@TET2!1.43!25.67!TET2;;chr10:35484804..35484902,+!p2@CREM!1.42!95.32!CREM;;chr19:47616992..47617011,-!p4@ZC3H4!1.42!52.63!ZC3H4;;chr2:61108808..61108821,+!p3@REL!1.42!31.77!REL;;chr5:88178983..88179012,-!p1@MEF2C!1.41!182.93!MEF2C;;chr2:145271342..145271377,-!p5@ZEB2!1.41!24.71!ZEB2;;chr10:35416142..35416169,+!p3@CREM!1.40!62.26!CREM;;chr14:35872962..35873025,-!p3@NFKBIA!1.40!60.01!NFKBIA;;chr18:3449720..3449749,+!p2@TGIF1!1.40!50.39!TGIF1;;chr2:70314240..70314256,+!p4@PCBP1!1.40!49.42!PCBP1;;chr6:12012249..12012266,+!p5@HIVEP1!1.40!41.40!HIVEP1;;chr4:83822246..83822277,+!p5@THAP9!1.40!24.39!THAP9;;chr20:48807351..48807384,+!p1@CEBPB!1.39!2286.62!CEBPB;;chr12:11802753..11802834,+!p2@ETV6!1.39!113.29!ETV6;;chr6:126240380..126240430,+!p2@NCOA7!1.39!60.33!NCOA7;;chr11:615942..615957,-!p1@IRF7!1.38!211.81!IRF7;;chr19:19496539..19496576,+!p8@GATAD2A!1.38!39.47!GATAD2A;;chr4:83821967..83821998,+!p3@THAP9!1.37!27.28!THAP9;;chr3:12329397..12329433,+!p2@PPARG!1.36!49.10!PPARG;;chr19:45251395..45251432,+!p8@BCL3!1.36!22.14!BCL3;;chr2:231090471..231090504,+!p2@SP140!1.36!21.82!SP140;;chr2:238600998..238601013,+!p5@LRRFIP1!1.36!21.82!LRRFIP1;;chr3:170075436..170075520,+!p1@SKIL!1.35!451.23!SKIL;;chr2:70166156..70166179,+!p4@MXD1!1.35!21.50!MXD1;;chr2:68615063..68615089,+!p4@PLEK!1.35!21.18!PLEK;;chr2:28615716..28615733,+!p1@FOSL2!1.34!948.02!FOSL2;;chr3:39195037..39195069,-!p2@CSRNP1!1.34!127.41!CSRNP1;;chr3:150126101..150126118,+!p6@TSC22D2!1.34!33.70!TSC22D2;;chr5:142782823..142782854,-!p3@NR3C1!1.34!29.85!NR3C1;;chr4:106066776..106066791,+!p9@TET2!1.34!20.86!TET2;;chr12:96588279..96588299,+!p4@ELK3!1.32!92.75!ELK3;;chr19:45252008..45252024,+!p2@BCL3!1.32!65.15!BCL3;;chr2:238600933..238600985,+!p3@LRRFIP1!1.31!102.70!LRRFIP1;;chr1:156470515..156470542,-!p2@MEF2D!1.31!99.17!MEF2D;;chr2:61108771..61108789,+!p4@REL!1.31!29.53!REL;;chr17:38497662..38497713,+!p4@RARA!1.31!22.47!RARA;;chr11:47399920..47399931,-!p7@SPI1!1.31!19.58!SPI1;;chr4:106066730..106066754,+!p6@TET2!1.31!19.58!TET2;;chr10:3827371..3827386,-!p2@KLF6!1.30!154.69!KLF6;;chr11:65430554..65430579,-!p3@RELA!1.30!47.18!RELA;;chr21:40177845..40177863,+!p1@ETS2!1.29!1056.50!ETS2;;chr18:3448455..3448480,+!p5@TGIF1!1.29!33.70!TGIF1;;chr2:191885737..191885750,-!p4@STAT1!1.29!18.29!STAT1;;chr5:71803177..71803255,-!p1@ZNF366!1.29!18.29!ZNF366;;chr7:17338266..17338282,+!p1@AHR!1.28!191.59!AHR;;chr22:38598086..38598105,+!p1@MAFF!1.28!189.35!MAFF;;chr1:157108130..157108173,-!p1@ETV3!1.28!128.69!ETV3;;chr14:35872926..35872951,-!p4@NFKBIA!1.27!24.71!NFKBIA;;chr18:3449618..3449634,+!p13@TGIF1!1.27!21.82!TGIF1;;chr2:73520667..73520683,-!p1@EGR4!1.27!17.65!EGR4;;chr4:83822294..83822306,+!p8@THAP9!1.27!17.65!THAP9;;chr1:221052776..221052799,+!p1@HLX!1.26!30.49!HLX;;chr6:126240463..126240489,+!p6@NCOA7!1.26!19.26!NCOA7;;chr21:30672433..30672464,+!p6@BACH1!1.26!17.33!BACH1;;chrX:153305741..153305753,-!p4@MECP2!1.26!17.33!MECP2;;chr12:72056706..72056717,+!p10@THAP2!1.25!16.69!THAP2;;chr6:15246261..15246312,+!p1@JARID2!1.24!390.57!JARID2;;chr21:36421535..36421610,-!p2@RUNX1!1.24!58.09!RUNX1;;chr3:12330560..12330579,+!p1@PPARG!1.24!18.61!PPARG;;chr7:106810484..106810494,+!p4@HBP1!1.24!16.37!HBP1;;chr7:115670792..115670797,-!p2@TFEC!1.23!16.05!TFEC;;chr18:77155922..77155939,+!p1@NFATC1!1.22!42.04!NFATC1;;chr8:116681123..116681143,-!p4@TRPS1!1.21!29.20!TRPS1;;chr20:48807456..48807475,+!p3@CEBPB!1.21!28.88!CEBPB;;chr8:53373491..53373506,-!p4@ST18!1.21!15.40!ST18;;chr2:68615031..68615055,+!p3@PLEK!1.21!15.08!PLEK;;chr13:41593392..41593403,-!p7@ELF1!1.21!15.08!ELF1;;chr19:45250948..45250998,+!p3@BCL3!1.20!37.23!BCL3;;chr7:44924939..44924993,-!p2@PURB!1.20!28.56!PURB;;chr2:70142189..70142223,+!p2@MXD1!1.19!102.70!MXD1;;chr12:48298785..48298828,-!p1@VDR!1.19!77.02!VDR;;chr8:116681150..116681164,-!p5@TRPS1!1.19!27.92!TRPS1;;chr2:70166988..70167021,+!p7@MXD1!1.19!14.44!MXD1;;chr21:40177892..40177903,+!p2@ETS2!1.18!55.84!ETS2;;chr1:221052733..221052749,+!p2@HLX!1.18!18.29!HLX;;chr19:50432104..50432126,+!p6@ATF5!1.18!14.12!ATF5;;chr10:31288329..31288353,-!p7@ZNF438!1.18!14.12!ZNF438;;chr5:137801160..137801176,+!p1@EGR1!1.17!1348.22!EGR1;;chr14:64971014..64971044,+!p4@ZBTB1!1.17!22.79!ZBTB1;;chr2:231090433..231090469,+!p1@SP140!1.17!13.80!SP140;;chr19:19496624..19496660,+!p3@GATAD2A!1.16!60.98!GATAD2A;;chr2:185463247..185463263,+!p1@ZNF804A!1.16!23.75!ZNF804A;;chr1:156470494..156470505,-!p3@MEF2D!1.16!19.58!MEF2D;;chrX:129244430..129244442,-!p5@ELF4!1.16!13.48!ELF4;;chr20:48807648..48807671,+!p9@CEBPB!1.15!19.26!CEBPB;;chr2:70167033..70167069,+!p11@MXD1!1.15!13.16!MXD1;;chr12:52448338..52448401,+!p7@NR4A1!1.15!13.16!NR4A1;;chr17:38474489..38474548,+!p1@RARA!1.14!401.16!RARA;;chr2:70167296..70167306,+!p3@MXD1!1.14!19.58!MXD1;;chr3:5022272..5022321,+!p7@BHLHE40!1.14!12.84!BHLHE40;;chr1:25256439..25256476,-!p3@RUNX3!1.14!12.84!RUNX3;;chr19:12902289..12902307,+!p1@JUNB!1.13!2831.56!JUNB;;chr14:75745523..75745537,+!p1@FOS!1.13!1485.90!FOS;;chr10:104155455..104155479,+!p1@NFKB2!1.13!182.93!NFKB2;;chr2:145277882..145277967,-!p3@ZEB2!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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.56!3588.31!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.79!613.94!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.69!486.21!TFEC;;chr3:101546827..101546847,+!p2@NFKBIZ!2.45!392.18!NFKBIZ;;chr12:72056800..72056834,+!p1@THAP2!2.41!343.07!THAP2;;chr16:85932760..85932775,+!p1@IRF8!2.36!230.43!IRF8;;chr10:35484053..35484076,+!p1@CREM!2.33!509.31!CREM;;chr12:54778471..54778528,-!p1@ZNF385A!2.30!197.69!ZNF385A;;chr2:70142232..70142251,+!p1@MXD1!2.29!1040.77!MXD1;;chr10:64018918..64018936,+!p2@ZNF365!2.21!160.79!ZNF365;;chr9:102584159..102584174,+!p2@NR4A3!2.20!275.04!NR4A3;;chr9:102584262..102584276,+!p1@NR4A3!2.19!334.41!NR4A3;;chr14:35872453..35872485,-!p2@NFKBIA!2.18!356.23!NFKBIA;;chr10:64576105..64576133,-!p1@EGR2!2.14!274.39!EGR2;;chr19:45971246..45971265,+!p1@FOSB!2.11!2233.02!FOSB;;chr2:157189180..157189290,-!p1@NR4A2!2.08!591.79!NR4A2;;chr20:39317868..39317884,-!p1@MAFB!2.05!1246.17!MAFB;;chr3:101568349..101568365,+!p1@NFKBIZ!2.04!5213.49!NFKBIZ;;chr11:47399947..47399961,-!p3@SPI1!2.03!104.94!SPI1;;chr14:35873947..35873965,-!p1@NFKBIA!2.02!6092.20!NFKBIA;;chr6:106534192..106534224,+!p1@PRDM1!1.98!255.46!PRDM1;;chr2:192015701..192015743,-!p1@STAT4!1.97!123.56!STAT4;;chr21:34442439..34442455,+!p1@OLIG1!1.97!91.79!OLIG1;;chr11:47400062..47400077,-!p2@SPI1!1.96!89.54!SPI1;;chr16:31885093..31885165,+!p1@ZNF267!1.94!1231.73!ZNF267;;chr12:52445218..52445237,+!p1@NR4A1!1.94!1009.00!NR4A1;;chr4:103422499..103422632,+!p1@NFKB1!1.91!1554.26!NFKB1;;chr10:31288398..31288455,-!p2@ZNF438!1.90!90.50!ZNF438;;chrX:153305787..153305807,-!p3@MECP2!1.89!77.34!MECP2;;chr19:54041669..54041697,+!p2@ZNF331!1.89!76.70!ZNF331;;chr9:102584128..102584144,+!p3@NR4A3!1.87!137.04!NR4A3;;chr2:68592394..68592405,+!p2@PLEK!1.86!71.89!PLEK;;chr4:83822199..83822239,+!p2@THAP9!1.85!83.12!THAP9;;chr19:50432132..50432217,+!p2@ATF5!1.84!80.55!ATF5;;chr10:35484090..35484104,+!p6@CREM!1.82!65.79!CREM;;chr1:212782094..212782109,+!p1@ATF3!1.81!1602.08!ATF3;;chr12:72056773..72056796,+!p3@THAP2!1.81!81.84!THAP2;;chr19:54058073..54058088,+!p1@ZNF331!1.81!63.22!ZNF331;;chr8:22550982..22550999,-!p1@EGR3!1.80!169.45!EGR3;;chr22:38597987..38598021,+!p2@MAFF!1.79!348.53!MAFF;;chr12:72056749..72056767,+!p6@THAP2!1.79!66.75!THAP2;;chr11:47400032..47400043,-!p5@SPI1!1.79!60.66!SPI1;;chr19:36391434..36391450,-!p1@NFKBID!1.78!112.33!NFKBID;;chr10:31288370..31288393,-!p3@ZNF438!1.77!58.41!ZNF438;;chr2:61108695..61108753,+!p1@REL!1.76!371.31!REL;;chr10:51572408..51572454,+!p3@NCOA4!1.76!310.34!NCOA4;;chr2:145277640..145277771,-!p1@ZEB2!1.74!674.27!ZEB2;;chr2:145275162..145275202,-!p2@ZEB2!1.73!296.54!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.70!48.78!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!1.69!87.93!RUNX3;;chr21:36260295..36260310,-!p3@RUNX1!1.68!74.78!RUNX1;;chr9:102584241..102584261,+!p4@NR4A3!1.66!68.36!NR4A3;;chr6:391743..391759,+!p1@IRF4!1.66!44.29!IRF4;;chr20:48599506..48599526,+!p1@SNAI1!1.65!270.54!SNAI1;;chr6:106534230..106534254,+!p2@PRDM1!1.64!104.94!PRDM1;;chr21:30671690..30671762,+!p2@BACH1!1.62!132.54!BACH1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.59!439.99!ZC3H12A;;chr10:104155480..104155534,+!p2@NFKB2!1.59!236.20!NFKB2;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.89!PLAGL1;;chr9:102584278..102584285,+!p5@NR4A3!1.59!37.55!NR4A3;;chr4:106068026..106068084,+!p1@TET2!1.57!312.26!TET2;;chr6:15246200..15246214,+!p2@JARID2!1.57!97.56!JARID2;;chr8:123793988..123794016,+!p1@ZHX2!1.57!62.58!ZHX2;;chr21:34398234..34398250,+!p1@OLIG2!1.56!34.98!OLIG2;;chr12:54778351..54778378,-!p6@ZNF385A!1.56!34.98!ZNF385A;;chr10:51572339..51572376,+!p4@NCOA4!1.55!75.10!NCOA4;;chr10:104155659..104155676,+!p4@NFKB2!1.54!41.72!NFKB2;;chr11:47400045..47400060,-!p6@SPI1!1.54!33.70!SPI1;;chr6:12012170..12012245,+!p1@HIVEP1!1.53!158.86!HIVEP1;;chr9:129567282..129567353,+!p1@ZBTB43!1.52!405.01!ZBTB43;;chr14:35872494..35872511,-!p5@NFKBIA!1.51!41.72!NFKBIA;;chr13:41593425..41593480,-!p1@ELF1!1.50!188.06!ELF1;;chr10:104154246..104154347,+!p3@NFKB2!1.50!180.36!NFKB2;;chr7:50344289..50344323,+!p1@IKZF1!1.50!30.49!IKZF1;;chr21:30671235..30671253,+!p1@BACH1!1.49!360.72!BACH1;;chr6:44233252..44233296,-!p1@NFKBIE!1.49!283.06!NFKBIE;;chr12:96588219..96588263,+!p2@ELK3!1.49!205.72!ELK3;;chr6:12011943..12012015,+!p2@HIVEP1!1.49!92.43!HIVEP1;;chr12:48298765..48298783,-!p2@VDR!1.49!60.66!VDR;;chr7:106809470..106809481,+!p2@HBP1!1.49!41.40!HBP1;;chr21:30673091..30673135,+!p7@BACH1!1.49!30.17!BACH1;;chrX:129244454..129244488,-!p1@ELF4!1.48!200.90!ELF4;;chr4:103423079..103423112,+!p4@NFKB1!1.47!28.24!NFKB1;;chr2:97202480..97202499,+!p1@ARID5A!1.46!270.86!ARID5A;;chr1:38325227..38325246,-!p2@MTF1!1.45!36.91!MTF1;;chr6:126240442..126240459,+!p4@NCOA7!1.45!34.34!NCOA7;;chrX:153305962..153305995,-!p5@MECP2!1.45!27.28!MECP2;;chr12:96588368..96588394,+!p3@ELK3!1.44!69.32!ELK3;;chr8:80679993..80680011,-!p1@HEY1!1.44!37.87!HEY1;;chr2:70165961..70165981,+!p8@MXD1!1.43!25.67!MXD1;;chr4:106066712..106066728,+!p8@TET2!1.43!25.67!TET2;;chr10:3548480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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure=FF:0000625,FF:0000632,FF:0011106,FF:11874-125C2 | |fonse_treatment_closure=FF:0000625,FF:0000632,FF:0011106,FF:11874-125C2 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor2.CNhs13532.11874-125C2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor2.CNhs13532.11874-125C2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor2.CNhs13532.11874-125C2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor2.CNhs13532.11874-125C2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor2.CNhs13532.11874-125C2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11874-125C2 | |id=FF:11874-125C2 | ||
|is_a=EFO:0002091;;FF:0011106 | |is_a=EFO:0002091;;FF:0011106 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13532 | |library_id=CNhs13532 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs13532 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11874 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11874 | |||
|name=CD14+ monocytes - treated with Group A streptococci, donor2 | |name=CD14+ monocytes - treated with Group A streptococci, donor2 | ||
|namespace= | |namespace= | ||
Line 51: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13532,LSID1029,release012,COMPLETED | |profile_hcage=CNhs13532,LSID1029,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 90: | Line 101: | ||
|top_motifs=FOSL2:6.31506769825;FOS_FOS{B,L1}_JUN{B,D}:6.23671228828;BACH2:6.03785764514;HLF:6.03256806669;NFE2:5.98013821252;NFE2L2:5.18704263302;CEBPA,B_DDIT3:5.15980523859;NFIL3:4.87889487941;IRF7:4.53589225287;PAX2:4.52180646781;NFKB1_REL_RELA:4.43667352622;FOXP3:4.21227461613;IRF1,2:4.00902434751;SPIB:3.87414304882;NANOG{mouse}:3.6657934836;SREBF1,2:3.60895037227;NFATC1..3:3.5950497125;STAT5{A,B}:3.43353684335;PAX8:3.39392702689;DMAP1_NCOR{1,2}_SMARC:3.36027184783;HSF1,2:3.35043292005;SPI1:3.32701258979;ATF5_CREB3:3.27534841003;ETS1,2:3.18767955196;NR1H4:3.15703611906;JUN:3.07876525552;NFE2L1:2.92270937996;RUNX1..3:2.91483007501;ATF6:2.90024935751;ATF4:2.83531406022;CREB1:2.64421007818;ATF2:2.63534023;MAFB:2.5555259732;PAX3,7:2.41559440896;HOX{A5,B5}:1.85281450224;FOXN1:1.75669671792;STAT2,4,6:1.7123703874;TGIF1:1.68542136838;XBP1:1.65352515581;HMGA1,2:1.41564337087;HOXA9_MEIS1:1.326183772;FOXO1,3,4:1.28841265734;ELF1,2,4:1.24728842449;IKZF1:1.0170509353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.94818976141;ALX4:0.855805972052;PDX1:0.842239589452;PRDM1:0.7275939955;RXRA_VDR{dimer}:0.718746659506;EP300:0.679544487717;CDX1,2,4:0.663029893149;NANOG:0.645187423905;NR3C1:0.641343113312;PPARG:0.504931396943;SMAD1..7,9:0.498103401154;RORA:0.494634744302;GLI1..3:0.456714925806;PAX1,9:0.426279418951;SRF:0.421601943509;HMX1:0.389911467517;HIF1A:0.362097414237;TBP:0.271724469351;OCT4_SOX2{dimer}:0.210898072977;ESR1:0.132971227589;SOX2:0.0924936443119;VSX1,2:0.0750792642253;POU2F1..3:0.0443477111343;BPTF:0.0400568641508;RBPJ:-0.0268723809789;EN1,2:-0.0412342637543;MEF2{A,B,C,D}:-0.106359124917;POU5F1:-0.151128854249;AHR_ARNT_ARNT2:-0.158604352014;POU3F1..4:-0.162688790424;EGR1..3:-0.204767932943;ZBTB16:-0.220039042405;HBP1_HMGB_SSRP1_UBTF:-0.332379566432;TLX2:-0.365064880641;STAT1,3:-0.369194791006;HES1:-0.462467161686;GATA4:-0.524155177544;FOXM1:-0.561263367277;IKZF2:-0.579146308754;PAX4:-0.625331948077;FOX{D1,D2}:-0.630094122328;MYB:-0.636714699845;RFX2..5_RFXANK_RFXAP:-0.648708143855;SPZ1:-0.712300493575;TFCP2:-0.738095057206;NFIX:-0.787536747546;DBP:-0.823742167552;NHLH1,2:-0.912400097489;MZF1:-0.931909419237;NR6A1:-1.03369935956;PRRX1,2:-1.05646865228;NKX2-1,4:-1.08507254384;FOXD3:-1.14289510963;TBX4,5:-1.19817261268;PITX1..3:-1.1982002629;MED-1{core}:-1.20195893991;ESRRA:-1.27927258424;PAX6:-1.28513020115;MYFfamily:-1.3000191974;TAL1_TCF{3,4,12}:-1.31940014821;CRX:-1.32027635951;HNF1A:-1.33229826601;MTE{core}:-1.36263901891;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.40676387154;NKX2-3_NKX2-5:-1.40834971605;SOX5:-1.41425436595;ZNF238:-1.44886234836;T:-1.45329180286;GCM1,2:-1.46455822991;TEF:-1.46813941758;ALX1:-1.48469776899;ADNP_IRX_SIX_ZHX:-1.48498369066;HOX{A4,D4}:-1.48584108283;HNF4A_NR2F1,2:-1.49631790153;TFDP1:-1.53823011647;FOX{F1,F2,J1}:-1.54381023137;TFAP4:-1.54784755784;REST:-1.5728431315;GZF1:-1.57590878273;NKX3-1:-1.59317234129;GTF2A1,2:-1.6245653357;GATA6:-1.65203874858;CUX2:-1.6577985666;E2F1..5:-1.6663811766;ZFP161:-1.67984794431;TEAD1:-1.70503597758;ZNF384:-1.70566951155;FOXL1:-1.74154465072;ZBTB6:-1.78012242227;BREu{core}:-1.80076099703;NKX3-2:-1.80928389318;NKX2-2,8:-1.88690576979;PATZ1:-1.89424085566;RXR{A,B,G}:-1.89630664438;GTF2I:-1.95844827041;TFAP2B:-1.99413177207;FOXA2:-2.0171133776;TP53:-2.02813353286;MYBL2:-2.03848130661;SP1:-2.07391243882;POU1F1:-2.125847067;RFX1:-2.13901092596;SOX{8,9,10}:-2.13986434489;MTF1:-2.15499117195;POU6F1:-2.15749549817;CDC5L:-2.22973660008;GFI1B:-2.26577310217;ELK1,4_GABP{A,B1}:-2.26897887925;MAZ:-2.28755325312;TLX1..3_NFIC{dimer}:-2.30628037244;NKX6-1,2:-2.33140169985;FOX{I1,J2}:-2.40790272813;FOXP1:-2.42230823433;HIC1:-2.46712411382;SOX17:-2.47024469362;ARID5B:-2.49065019152;ZEB1:-2.49476378101;TFAP2{A,C}:-2.51197049418;SNAI1..3:-2.5526882499;ZNF148:-2.57820821175;RREB1:-2.60431292381;PBX1:-2.63849352645;ZIC1..3:-2.70281707969;KLF4:-2.72583348567;ONECUT1,2:-2.73350362153;NFY{A,B,C}:-2.7624205791;EVI1:-2.81373853684;bHLH_family:-2.83103077846;XCPE1{core}:-2.88096386273;HOX{A6,A7,B6,B7}:-2.89209315476;NR5A1,2:-3.00693624655;EBF1:-3.05326888635;AIRE:-3.07460756047;GFI1:-3.1715865748;UFEwm:-3.19972867824;NRF1:-3.29657946488;LMO2:-3.30396251301;MYOD1:-3.33344467894;AR:-3.33827528279;ZNF423:-3.44311928295;LHX3,4:-3.48103200873;PAX5:-3.52837143127;LEF1_TCF7_TCF7L1,2:-3.72721375392;HAND1,2:-3.80077881271;FOXQ1:-3.80780873307;YY1:-3.92075328151;ZNF143:-4.15136634084;TOPORS:-5.41544898734 | |top_motifs=FOSL2:6.31506769825;FOS_FOS{B,L1}_JUN{B,D}:6.23671228828;BACH2:6.03785764514;HLF:6.03256806669;NFE2:5.98013821252;NFE2L2:5.18704263302;CEBPA,B_DDIT3:5.15980523859;NFIL3:4.87889487941;IRF7:4.53589225287;PAX2:4.52180646781;NFKB1_REL_RELA:4.43667352622;FOXP3:4.21227461613;IRF1,2:4.00902434751;SPIB:3.87414304882;NANOG{mouse}:3.6657934836;SREBF1,2:3.60895037227;NFATC1..3:3.5950497125;STAT5{A,B}:3.43353684335;PAX8:3.39392702689;DMAP1_NCOR{1,2}_SMARC:3.36027184783;HSF1,2:3.35043292005;SPI1:3.32701258979;ATF5_CREB3:3.27534841003;ETS1,2:3.18767955196;NR1H4:3.15703611906;JUN:3.07876525552;NFE2L1:2.92270937996;RUNX1..3:2.91483007501;ATF6:2.90024935751;ATF4:2.83531406022;CREB1:2.64421007818;ATF2:2.63534023;MAFB:2.5555259732;PAX3,7:2.41559440896;HOX{A5,B5}:1.85281450224;FOXN1:1.75669671792;STAT2,4,6:1.7123703874;TGIF1:1.68542136838;XBP1:1.65352515581;HMGA1,2:1.41564337087;HOXA9_MEIS1:1.326183772;FOXO1,3,4:1.28841265734;ELF1,2,4:1.24728842449;IKZF1:1.0170509353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.94818976141;ALX4:0.855805972052;PDX1:0.842239589452;PRDM1:0.7275939955;RXRA_VDR{dimer}:0.718746659506;EP300:0.679544487717;CDX1,2,4:0.663029893149;NANOG:0.645187423905;NR3C1:0.641343113312;PPARG:0.504931396943;SMAD1..7,9:0.498103401154;RORA:0.494634744302;GLI1..3:0.456714925806;PAX1,9:0.426279418951;SRF:0.421601943509;HMX1:0.389911467517;HIF1A:0.362097414237;TBP:0.271724469351;OCT4_SOX2{dimer}:0.210898072977;ESR1:0.132971227589;SOX2:0.0924936443119;VSX1,2:0.0750792642253;POU2F1..3:0.0443477111343;BPTF:0.0400568641508;RBPJ:-0.0268723809789;EN1,2:-0.0412342637543;MEF2{A,B,C,D}:-0.106359124917;POU5F1:-0.151128854249;AHR_ARNT_ARNT2:-0.158604352014;POU3F1..4:-0.162688790424;EGR1..3:-0.204767932943;ZBTB16:-0.220039042405;HBP1_HMGB_SSRP1_UBTF:-0.332379566432;TLX2:-0.365064880641;STAT1,3:-0.369194791006;HES1:-0.462467161686;GATA4:-0.524155177544;FOXM1:-0.561263367277;IKZF2:-0.579146308754;PAX4:-0.625331948077;FOX{D1,D2}:-0.630094122328;MYB:-0.636714699845;RFX2..5_RFXANK_RFXAP:-0.648708143855;SPZ1:-0.712300493575;TFCP2:-0.738095057206;NFIX:-0.787536747546;DBP:-0.823742167552;NHLH1,2:-0.912400097489;MZF1:-0.931909419237;NR6A1:-1.03369935956;PRRX1,2:-1.05646865228;NKX2-1,4:-1.08507254384;FOXD3:-1.14289510963;TBX4,5:-1.19817261268;PITX1..3:-1.1982002629;MED-1{core}:-1.20195893991;ESRRA:-1.27927258424;PAX6:-1.28513020115;MYFfamily:-1.3000191974;TAL1_TCF{3,4,12}:-1.31940014821;CRX:-1.32027635951;HNF1A:-1.33229826601;MTE{core}:-1.36263901891;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.40676387154;NKX2-3_NKX2-5:-1.40834971605;SOX5:-1.41425436595;ZNF238:-1.44886234836;T:-1.45329180286;GCM1,2:-1.46455822991;TEF:-1.46813941758;ALX1:-1.48469776899;ADNP_IRX_SIX_ZHX:-1.48498369066;HOX{A4,D4}:-1.48584108283;HNF4A_NR2F1,2:-1.49631790153;TFDP1:-1.53823011647;FOX{F1,F2,J1}:-1.54381023137;TFAP4:-1.54784755784;REST:-1.5728431315;GZF1:-1.57590878273;NKX3-1:-1.59317234129;GTF2A1,2:-1.6245653357;GATA6:-1.65203874858;CUX2:-1.6577985666;E2F1..5:-1.6663811766;ZFP161:-1.67984794431;TEAD1:-1.70503597758;ZNF384:-1.70566951155;FOXL1:-1.74154465072;ZBTB6:-1.78012242227;BREu{core}:-1.80076099703;NKX3-2:-1.80928389318;NKX2-2,8:-1.88690576979;PATZ1:-1.89424085566;RXR{A,B,G}:-1.89630664438;GTF2I:-1.95844827041;TFAP2B:-1.99413177207;FOXA2:-2.0171133776;TP53:-2.02813353286;MYBL2:-2.03848130661;SP1:-2.07391243882;POU1F1:-2.125847067;RFX1:-2.13901092596;SOX{8,9,10}:-2.13986434489;MTF1:-2.15499117195;POU6F1:-2.15749549817;CDC5L:-2.22973660008;GFI1B:-2.26577310217;ELK1,4_GABP{A,B1}:-2.26897887925;MAZ:-2.28755325312;TLX1..3_NFIC{dimer}:-2.30628037244;NKX6-1,2:-2.33140169985;FOX{I1,J2}:-2.40790272813;FOXP1:-2.42230823433;HIC1:-2.46712411382;SOX17:-2.47024469362;ARID5B:-2.49065019152;ZEB1:-2.49476378101;TFAP2{A,C}:-2.51197049418;SNAI1..3:-2.5526882499;ZNF148:-2.57820821175;RREB1:-2.60431292381;PBX1:-2.63849352645;ZIC1..3:-2.70281707969;KLF4:-2.72583348567;ONECUT1,2:-2.73350362153;NFY{A,B,C}:-2.7624205791;EVI1:-2.81373853684;bHLH_family:-2.83103077846;XCPE1{core}:-2.88096386273;HOX{A6,A7,B6,B7}:-2.89209315476;NR5A1,2:-3.00693624655;EBF1:-3.05326888635;AIRE:-3.07460756047;GFI1:-3.1715865748;UFEwm:-3.19972867824;NRF1:-3.29657946488;LMO2:-3.30396251301;MYOD1:-3.33344467894;AR:-3.33827528279;ZNF423:-3.44311928295;LHX3,4:-3.48103200873;PAX5:-3.52837143127;LEF1_TCF7_TCF7L1,2:-3.72721375392;HAND1,2:-3.80077881271;FOXQ1:-3.80780873307;YY1:-3.92075328151;ZNF143:-4.15136634084;TOPORS:-5.41544898734 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11874-125C2;search_select_hide=table117:FF:11874-125C2 | |||
}} | }} |
Latest revision as of 18:25, 4 June 2020
Name: | CD14+ monocytes - treated with Group A streptococci, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13532 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13532
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13532
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.119 |
10 | 10 | 0.0279 |
100 | 100 | 0.797 |
101 | 101 | 0.764 |
102 | 102 | 0.965 |
103 | 103 | 0.244 |
104 | 104 | 0.568 |
105 | 105 | 0.109 |
106 | 106 | 0.0012 |
107 | 107 | 0.206 |
108 | 108 | 0.556 |
109 | 109 | 0.417 |
11 | 11 | 0.209 |
110 | 110 | 0.212 |
111 | 111 | 0.159 |
112 | 112 | 0.298 |
113 | 113 | 0.486 |
114 | 114 | 0.0345 |
115 | 115 | 0.253 |
116 | 116 | 0.969 |
117 | 117 | 0.119 |
118 | 118 | 0.198 |
119 | 119 | 0.184 |
12 | 12 | 0.314 |
120 | 120 | 0.794 |
121 | 121 | 0.524 |
122 | 122 | 0.592 |
123 | 123 | 0.73 |
124 | 124 | 0.557 |
125 | 125 | 0.344 |
126 | 126 | 0.234 |
127 | 127 | 0.467 |
128 | 128 | 0.0523 |
129 | 129 | 0.37 |
13 | 13 | 0.118 |
130 | 130 | 0.401 |
131 | 131 | 0.849 |
132 | 132 | 0.0423 |
133 | 133 | 0.582 |
134 | 134 | 0.508 |
135 | 135 | 0.802 |
136 | 136 | 0.842 |
137 | 137 | 0.0278 |
138 | 138 | 0.384 |
139 | 139 | 0.117 |
14 | 14 | 0.509 |
140 | 140 | 0.545 |
141 | 141 | 0.272 |
142 | 142 | 0.0326 |
143 | 143 | 0.0238 |
144 | 144 | 0.445 |
145 | 145 | 0.414 |
146 | 146 | 0.853 |
147 | 147 | 0.738 |
148 | 148 | 0.0131 |
149 | 149 | 0.944 |
15 | 15 | 0.165 |
150 | 150 | 0.373 |
151 | 151 | 0.523 |
152 | 152 | 0.395 |
153 | 153 | 0.558 |
154 | 154 | 0.801 |
155 | 155 | 0.919 |
156 | 156 | 0.935 |
157 | 157 | 0.556 |
158 | 158 | 0.0412 |
159 | 159 | 0.139 |
16 | 16 | 0.406 |
160 | 160 | 0.451 |
161 | 161 | 0.486 |
162 | 162 | 0.161 |
163 | 163 | 0.13 |
164 | 164 | 0.16 |
165 | 165 | 0.308 |
166 | 166 | 0.736 |
167 | 167 | 0.33 |
168 | 168 | 0.144 |
169 | 169 | 0.0243 |
17 | 17 | 0.273 |
18 | 18 | 0.0874 |
19 | 19 | 0.526 |
2 | 2 | 0.486 |
20 | 20 | 0.232 |
21 | 21 | 0.828 |
22 | 22 | 0.326 |
23 | 23 | 0.034 |
24 | 24 | 0.408 |
25 | 25 | 0.487 |
26 | 26 | 0.0939 |
27 | 27 | 0.507 |
28 | 28 | 0.396 |
29 | 29 | 0.296 |
3 | 3 | 0.167 |
30 | 30 | 0.49 |
31 | 31 | 0.767 |
32 | 32 | 0.388 |
33 | 33 | 0.272 |
34 | 34 | 0.754 |
35 | 35 | 0.137 |
36 | 36 | 0.0697 |
37 | 37 | 0.0798 |
38 | 38 | 0.37 |
39 | 39 | 0.826 |
4 | 4 | 0.869 |
40 | 40 | 0.26 |
41 | 41 | 0.0176 |
42 | 42 | 0.354 |
43 | 43 | 0.0214 |
44 | 44 | 0.579 |
45 | 45 | 0.768 |
46 | 46 | 0.22 |
47 | 47 | 0.662 |
48 | 48 | 0.601 |
49 | 49 | 0.129 |
5 | 5 | 0.296 |
50 | 50 | 0.964 |
51 | 51 | 0.497 |
52 | 52 | 0.455 |
53 | 53 | 0.72 |
54 | 54 | 0.483 |
55 | 55 | 0.534 |
56 | 56 | 0.687 |
57 | 57 | 0.87 |
58 | 58 | 0.163 |
59 | 59 | 0.243 |
6 | 6 | 0.896 |
60 | 60 | 0.0604 |
61 | 61 | 0.681 |
62 | 62 | 0.0927 |
63 | 63 | 0.619 |
64 | 64 | 0.491 |
65 | 65 | 0.234 |
66 | 66 | 0.236 |
67 | 67 | 0.491 |
68 | 68 | 0.671 |
69 | 69 | 0.384 |
7 | 7 | 0.249 |
70 | 70 | 0.0653 |
71 | 71 | 0.0299 |
72 | 72 | 0.116 |
73 | 73 | 0.239 |
74 | 74 | 0.0517 |
75 | 75 | 0.195 |
76 | 76 | 0.17 |
77 | 77 | 0.634 |
78 | 78 | 0.138 |
79 | 79 | 0.663 |
8 | 8 | 0.433 |
80 | 80 | 0.144 |
81 | 81 | 0.333 |
82 | 82 | 0.232 |
83 | 83 | 0.0154 |
84 | 84 | 0.14 |
85 | 85 | 0.0303 |
86 | 86 | 0.0656 |
87 | 87 | 0.504 |
88 | 88 | 0.714 |
89 | 89 | 0.209 |
9 | 9 | 0.337 |
90 | 90 | 0.117 |
91 | 91 | 0.441 |
92 | 92 | 0.298 |
93 | 93 | 0.411 |
94 | 94 | 0.0957 |
95 | 95 | 0.522 |
96 | 96 | 0.381 |
97 | 97 | 0.522 |
98 | 98 | 0.179 |
99 | 99 | 0.052 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13532
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011106 human CD14-positive monocytes - treated with Group A streptococci sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0011106 (human CD14-positive monocytes - treated with Group A streptococci sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)