FF:10477-106I9: Difference between revisions

Latest revision as of 14:26, 3 June 2020

Name:	rhabdomyosarcoma cell line:RMS-YM
Species:	Human (Homo sapiens)
Library ID:	CNhs11269
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skeletal muscle
dev stage	NA
sex	male
age	2
cell type	skeletal muscle cell
cell line	RMS-YM
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005653

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11269		CAGE		DRX007994		DRR008866

Accession ID Hg19

Library id		BAM		CTSS
CNhs11269		DRZ000291		DRZ001676

Accession ID Hg38

Library id		BAM		CTSS
CNhs11269		DRZ011641		DRZ013026

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0629
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.688
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0.99
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.971
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0952
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.146
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.00155
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.125
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.774
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0996
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0281
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.64
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0696
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.229
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.229
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.0996
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0696
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11269

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	7.98936e-4
MA0003.1	MA0003.1	0.119
MA0004.1	MA0004.1	0.363
MA0006.1	MA0006.1	0.18
MA0007.1	MA0007.1	0.263
MA0009.1	MA0009.1	0.313
MA0014.1	MA0014.1	0.266
MA0017.1	MA0017.1	0.00402
MA0018.2	MA0018.2	0.776
MA0019.1	MA0019.1	0.252
MA0024.1	MA0024.1	1.50709e-8
MA0025.1	MA0025.1	0.649
MA0027.1	MA0027.1	0.271
MA0028.1	MA0028.1	0.107
MA0029.1	MA0029.1	0.628
MA0030.1	MA0030.1	0.0693
MA0031.1	MA0031.1	0.421
MA0035.2	MA0035.2	0.696
MA0038.1	MA0038.1	2.46507e-5
MA0039.2	MA0039.2	0.0186
MA0040.1	MA0040.1	0.49
MA0041.1	MA0041.1	0.179
MA0042.1	MA0042.1	0.482
MA0043.1	MA0043.1	0.996
MA0046.1	MA0046.1	0.0882
MA0047.2	MA0047.2	0.0639
MA0048.1	MA0048.1	0.5
MA0050.1	MA0050.1	5.32268e-4
MA0051.1	MA0051.1	0.0398
MA0052.1	MA0052.1	0.918
MA0055.1	MA0055.1	0.846
MA0057.1	MA0057.1	0.215
MA0058.1	MA0058.1	0.481
MA0059.1	MA0059.1	0.611
MA0060.1	MA0060.1	2.80125e-13
MA0061.1	MA0061.1	0.0113
MA0062.2	MA0062.2	0.852
MA0065.2	MA0065.2	0.0997
MA0066.1	MA0066.1	0.0583
MA0067.1	MA0067.1	0.15
MA0068.1	MA0068.1	6.39223e-6
MA0069.1	MA0069.1	0.808
MA0070.1	MA0070.1	0.574
MA0071.1	MA0071.1	0.562
MA0072.1	MA0072.1	0.332
MA0073.1	MA0073.1	0.552
MA0074.1	MA0074.1	0.0945
MA0076.1	MA0076.1	0.0621
MA0077.1	MA0077.1	0.663
MA0078.1	MA0078.1	0.989
MA0079.2	MA0079.2	0.128
MA0080.2	MA0080.2	2.70042e-12
MA0081.1	MA0081.1	0.0585
MA0083.1	MA0083.1	0.00222
MA0084.1	MA0084.1	0.602
MA0087.1	MA0087.1	0.937
MA0088.1	MA0088.1	0.525
MA0090.1	MA0090.1	0.399
MA0091.1	MA0091.1	0.476
MA0092.1	MA0092.1	0.154
MA0093.1	MA0093.1	0.349
MA0099.2	MA0099.2	4.12171e-15
MA0100.1	MA0100.1	0.11
MA0101.1	MA0101.1	0.119
MA0102.2	MA0102.2	4.55939e-4
MA0103.1	MA0103.1	0.0274
MA0104.2	MA0104.2	0.0833
MA0105.1	MA0105.1	0.0873
MA0106.1	MA0106.1	0.274
MA0107.1	MA0107.1	0.0249
MA0108.2	MA0108.2	0.101
MA0111.1	MA0111.1	0.826
MA0112.2	MA0112.2	7.59939e-4
MA0113.1	MA0113.1	0.245
MA0114.1	MA0114.1	0.116
MA0115.1	MA0115.1	0.365
MA0116.1	MA0116.1	0.0435
MA0117.1	MA0117.1	0.349
MA0119.1	MA0119.1	0.801
MA0122.1	MA0122.1	0.4
MA0124.1	MA0124.1	0.433
MA0125.1	MA0125.1	0.19
MA0131.1	MA0131.1	0.197
MA0135.1	MA0135.1	0.259
MA0136.1	MA0136.1	3.48335e-9
MA0137.2	MA0137.2	0.161
MA0138.2	MA0138.2	0.126
MA0139.1	MA0139.1	0.189
MA0140.1	MA0140.1	0.861
MA0141.1	MA0141.1	0.12
MA0142.1	MA0142.1	0.945
MA0143.1	MA0143.1	0.963
MA0144.1	MA0144.1	0.0113
MA0145.1	MA0145.1	0.103
MA0146.1	MA0146.1	0.262
MA0147.1	MA0147.1	0.099
MA0148.1	MA0148.1	0.0813
MA0149.1	MA0149.1	0.0973
MA0150.1	MA0150.1	4.53606e-5
MA0152.1	MA0152.1	0.336
MA0153.1	MA0153.1	0.158
MA0154.1	MA0154.1	0.0145
MA0155.1	MA0155.1	0.444
MA0156.1	MA0156.1	7.43962e-5
MA0157.1	MA0157.1	0.984
MA0159.1	MA0159.1	0.0425
MA0160.1	MA0160.1	0.0474
MA0162.1	MA0162.1	0.242
MA0163.1	MA0163.1	0.262
MA0164.1	MA0164.1	0.792
MA0258.1	MA0258.1	0.0179
MA0259.1	MA0259.1	0.145

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11269

Novel motif	Logo	P-value
1	1	0.369
10	10	0.44
100	100	0.753
101	101	0.969
102	102	0.82
103	103	0.0726
104	104	0.844
105	105	0.935
106	106	0.00439
107	107	0.692
108	108	0.829
109	109	0.0181
11	11	0.0628
110	110	0.934
111	111	0.557
112	112	3.74919e-4
113	113	0.00322
114	114	0.0131
115	115	0.276
116	116	0.781
117	117	0.829
118	118	0.253
119	119	0.219
12	12	0.297
120	120	0.864
121	121	0.569
122	122	0.171
123	123	0.611
124	124	0.534
125	125	0.317
126	126	0.203
127	127	0.32
128	128	0.139
129	129	0.845
13	13	0.776
130	130	0.0248
131	131	0.959
132	132	0.945
133	133	0.611
134	134	0.562
135	135	0.142
136	136	0.262
137	137	0.0571
138	138	0.589
139	139	0.0578
14	14	0.163
140	140	0.408
141	141	0.746
142	142	0.233
143	143	0.0456
144	144	0.666
145	145	0.923
146	146	0.707
147	147	0.437
148	148	0.115
149	149	0.0579
15	15	0.204
150	150	0.513
151	151	0.528
152	152	0.00863
153	153	0.98
154	154	0.663
155	155	0.806
156	156	0.533
157	157	0.492
158	158	0.852
159	159	0.233
16	16	0.105
160	160	0.75
161	161	0.825
162	162	0.571
163	163	0.564
164	164	0.164
165	165	0.323
166	166	0.889
167	167	0.475
168	168	0.632
169	169	0.052
17	17	0.503
18	18	0.623
19	19	0.363
2	2	0.186
20	20	0.981
21	21	0.909
22	22	0.167
23	23	0.0131
24	24	0.512
25	25	0.579
26	26	0.473
27	27	0.0377
28	28	0.949
29	29	0.455
3	3	0.418
30	30	0.364
31	31	0.55
32	32	0.0198
33	33	0.705
34	34	0.604
35	35	0.697
36	36	0.542
37	37	0.0745
38	38	0.275
39	39	0.726
4	4	0.381
40	40	0.14
41	41	0.337
42	42	0.984
43	43	0.249
44	44	0.0611
45	45	0.291
46	46	0.103
47	47	0.335
48	48	0.34
49	49	0.81
5	5	0.202
50	50	0.887
51	51	0.948
52	52	0.148
53	53	0.622
54	54	0.98
55	55	0.299
56	56	0.97
57	57	0.623
58	58	0.345
59	59	0.0199
6	6	0.555
60	60	0.0375
61	61	1
62	62	0.278
63	63	0.337
64	64	0.247
65	65	0.0424
66	66	0.0109
67	67	0.589
68	68	0.702
69	69	0.251
7	7	0.919
70	70	0.0304
71	71	0.148
72	72	0.038
73	73	0.00721
74	74	0.0994
75	75	0.477
76	76	0.998
77	77	0.0487
78	78	0.393
79	79	0.593
8	8	0.355
80	80	0.191
81	81	0.38
82	82	0.00253
83	83	0.357
84	84	0.491
85	85	0.00309
86	86	0.274
87	87	0.0149
88	88	0.595
89	89	0.0443
9	9	0.186
90	90	0.406
91	91	0.189
92	92	0.153
93	93	0.577
94	94	0.518
95	95	0.0218
96	96	0.203
97	97	0.917
98	98	0.303
99	99	0.779

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11269

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102267 rhabdomyosarcoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0102267 (rhabdomyosarcoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007888
+|DRA_sample_Accession=CAGE@SAMD00005653
-|accession_numbers=CAGE;DRX007994;DRR008866;DRZ000291;DRZ001676
+|accession_numbers=CAGE;DRX007994;DRR008866;DRZ000291;DRZ001676;DRZ011641;DRZ013026
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!2.80!623.28!MYF5;;chr1:40105299..40105326,-!p1@HEYL!2.28!191.07!HEYL;;chr15:57511609..57511651,+!p2@TCF12!2.14!226.71!TCF12;;chr12:66218255..66218304,+!p3@HMGA2!2.13!342.33!HMGA2;;chr12:69753448..69753577,+!p1@YEATS4!2.04!1998.67!YEATS4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.90!78.58!PEG3;;chr15:42749722..42749739,-!p2@ZFP106!1.89!134.39!ZFP106;;chr12:66218212..66218244,+!p5@HMGA2!1.87!105.53!HMGA2;;chr3:147127142..147127168,+!p1@ZIC1!1.87!73.37!ZIC1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.86!71.28!HOXC5;;chr8:72756637..72756664,-!p3@MSC!1.85!78.06!MSC;;chr8:72756667..72756736,-!p2@MSC!1.81!97.88!MSC;;chr12:66218183..66218209,+!p4@HMGA2!1.80!115.79!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.79!268.44!HMGA2;;chr3:147127177..147127194,+!p2@ZIC1!1.79!60.50!ZIC1;;chr11:63684602..63684664,-!p1@RCOR2!1.71!97.88!RCOR2;;chr2:145275947..145275981,-!p10@ZEB2!1.71!49.72!ZEB2;;chr11:17741111..17741124,+!p1@MYOD1!1.69!48.16!MYOD1;;chr8:80679993..80680011,-!p1@HEY1!1.66!63.28!HEY1;;chr7:150946015..150946070,-!p3@SMARCD3!1.63!88.15!SMARCD3;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.61!39.29!MEF2B;;chr13:72441074..72441172,-!p2@DACH1!1.59!37.73!DACH1;;chr13:72441315..72441454,-!p1@DACH1!1.57!71.46!DACH1;;chr16:1031762..1031781,+!p1@SOX8!1.57!36.34!SOX8;;chr11:125034640..125034655,+!p1@PKNOX2!1.56!35.47!PKNOX2;;chr10:131762504..131762555,-!p1@EBF3!1.55!34.42!EBF3;;chr14:61116183..61116208,-!p1@SIX1!1.54!124.13!SIX1;;chr1:3569072..3569093,+!p1@TP73!1.52!31.99!TP73;;chr11:125034605..125034636,+!p2@PKNOX2!1.50!30.95!PKNOX2;;chr17:59529743..59529798,+!p1@TBX4!1.50!30.77!TBX4;;chr1:170633348..170633399,+!p2@PRRX1!1.48!39.29!PRRX1;;chr17:46703687..46703740,-!p1@HOXB9!1.47!28.51!HOXB9;;chr8:106330656..106330684,+!p1@ZFPM2!1.42!64.50!ZFPM2;;chr1:23857325..23857416,-!p2@E2F2!1.42!29.73!E2F2;;chr12:66218152..66218174,+!p10@HMGA2!1.42!27.12!HMGA2;;chr2:145275982..145276003,-!p7@ZEB2!1.41!24.69!ZEB2;;chr19:22817119..22817145,+!p1@ZNF492!1.39!38.77!ZNF492;;chr2:145277882..145277967,-!p3@ZEB2!1.38!39.64!ZEB2;;chr7:27192185..27192209,-!p1@HOXA3!1.38!22.95!HOXA3;;chr7:14029283..14029311,-!p1@ETV1!1.37!115.44!ETV1;;chr3:169381420..169381535,-!p1@MECOM!1.36!25.56!MECOM;;chr17:46806419..46806438,-!p4@HOXB13!1.36!21.91!HOXB13;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.36!21.73!EN2;;chr7:27153454..27153469,-!p2@HOXA3!1.36!21.73!HOXA3;;chr19:50432453..50432468,+!p1@ATF5!1.35!1152.16!ATF5;;chr10:70320074..70320106,+!p1@TET1!1.35!42.07!TET1;;chr4:111558135..111558198,-!p2@PITX2!1.35!21.21!PITX2;;chr11:31832658..31832681,-!p1@PAX6!1.34!20.69!PAX6;;chr9:96717629..96717644,-!p1@BARX1!1.34!20.69!BARX1;;chr22:19748231..19748317,+!p1@TBX1!1.33!20.52!TBX1;;chr2:176969179..176969226,+!p2@HOXD11!1.33!20.34!HOXD11;;chr17:41622765..41622821,-!p2@ETV4!1.32!30.25!ETV4;;chr9:14314131..14314147,-!p2@NFIB!1.31!105.71!NFIB;;chr12:66218573..66218596,+!p7@HMGA2!1.31!28.69!HMGA2;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.65!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!1.31!19.47!HOXA9;;chr1:119530493..119530572,-!p1@TBX15!1.31!19.30!TBX15;;chr4:111544219..111544240,-!p1@PITX2!1.31!19.30!PITX2;;chr12:66218378..66218401,+!p6@HMGA2!1.30!29.38!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!1.30!24.17!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!1.30!18.78!TCF12;;chr7:149470641..149470694,-!p1@ZNF467!1.28!81.02!ZNF467;;chr5:134369905..134369972,-!p1@PITX1!1.27!26.60!PITX1;;chr3:147111231..147111281,+!p3@ZIC1!1.27!17.73!ZIC1;;chr7:138666053..138666146,-!p1@KIAA1549!1.26!70.41!KIAA1549;;chr2:176969228..176969260,+!p1@HOXD11!1.26!17.21!HOXD11;;chr19:46800289..46800327,+!p2@HIF3A!1.25!16.69!HIF3A;;chr17:70117153..70117174,+!p1@SOX9!1.24!165.69!SOX9;;chr8:80680024..80680046,-!p2@HEY1!1.24!18.60!HEY1;;chr12:81101404..81101421,+!p1@MYF6!1.24!16.52!MYF6;;chr17:46682321..46682362,-!p1@HOXB6!1.23!15.82!HOXB6;;chr12:66218420..66218439,+!p12@HMGA2!1.22!15.65!HMGA2;;chr4:174451370..174451387,-!p1@HAND2!1.22!15.65!HAND2;;chr1:203055129..203055147,-!p1@MYOG!1.22!15.47!MYOG;;chr1:41827095..41827155,+!p1@FOXO6!1.20!20.34!FOXO6;;chr7:42276787..42276815,-!p1@GLI3!1.19!38.25!GLI3;;chr11:17741084..17741094,+!p3@MYOD1!1.19!14.60!MYOD1;;chr12:54379029..54379057,+!p2@HOXC10!1.19!14.60!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.43!HOXC5;;chr2:45168997..45169020,+!p4@SIX3!1.19!14.43!SIX3;;chr7:27196267..27196311,-!p1@HOXA7!1.16!13.39!HOXA7;;chr2:25475120..25475176,-!p2@DNMT3A!1.13!16.86!DNMT3A;;chr11:125034586..125034604,+!p3@PKNOX2!1.13!12.52!PKNOX2;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.52!HOXA11;;chr6:50786591..50786614,+!p1@TFAP2B!1.13!12.34!TFAP2B;;chr7:150945663..150945692,-!p5@SMARCD3!1.13!12.34!SMARCD3;;chr17:46622205..46622218,-!p3@HOXB2!1.12!14.26!HOXB2;;chr17:53342311..53342400,+!p1@HLF!1.12!13.91!HLF;;chr2:45169143..45169167,+!p5@SIX3!1.12!12.17!SIX3;;chr12:66218003..66218018,+!p9@HMGA2!1.11!14.60!HMGA2;;chr13:79177674..79177701,-!p1@POU4F1!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@@ Line 40: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10477-106I9
 |is_a=EFO:0002091;;FF:0000210;;FF:0102267
 |is_obsolete=
 |library_id=CNhs11269
-|library_id_phase_based=1:CNhs11269
+|library_id_phase_based=2:CNhs11269
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10477
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10477
 |name=rhabdomyosarcoma cell line:RMS-YM
 |namespace=FANTOM5
@@ Line 50: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11269,LSID758,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10477-106I9;search_select_hide=table117:FF:10477-106I9
 }}

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FF:10477-106I9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0