FFCP PHASE1:Mm9::chr14:55735452..55735474,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:55735452..55735474,-
|short_description=p1@Jph4
|description=CAGE_peak_1_at_Jph4_5end
|association_with_transcript=-35bp_to_ENSMUST00000133954_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=319984 | |EntrezGene=319984 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-35bp_to_ENSMUST00000133954_5end | |||
|cluster_id=chr14:55735452..55735474,- | |||
|description=CAGE_peak_1_at_Jph4_5end | |||
|id=chr14:55735452..55735474,- | |||
|ontology_enrichment_celltype=CL:0000117!7.51e-13!23;CL:0000337!7.51e-13!23;CL:0000540!1.02e-12!33;CL:0000047!1.02e-12!33;CL:0000031!1.02e-12!33;CL:0000404!1.02e-12!33;CL:0000393!1.54e-08!39;CL:0000211!1.54e-08!39;CL:0002319!2.47e-08!43;CL:0000221!3.02e-08!44;CL:0000133!3.02e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.63e-14,23;CL:0000337,8.63e-14,23;CL:0000540,1.20e-13,33;CL:0000047,1.20e-13,33;CL:0000031,1.20e-13,33;CL:0000404,1.20e-13,33;CL:0000393,1.41e-09,39;CL:0000211,1.41e-09,39;CL:0002319,1.90e-08,43;CL:0000221,2.32e-08,44;CL:0000133,2.32e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.48e-23!71;UBERON:0003075!1.48e-23!71;UBERON:0007284!1.48e-23!71;UBERON:0001017!4.58e-23!73;UBERON:0005743!4.58e-23!73;UBERON:0000073!1.63e-22!75;UBERON:0001016!1.63e-22!75;UBERON:0004121!1.70e-22!102;UBERON:0000924!1.70e-22!102;UBERON:0006601!1.70e-22!102;UBERON:0001049!7.77e-20!52;UBERON:0005068!7.77e-20!52;UBERON:0006241!7.77e-20!52;UBERON:0007135!7.77e-20!52;UBERON:0000033!4.34e-19!63;UBERON:0000955!6.57e-19!50;UBERON:0006238!6.57e-19!50;UBERON:0002616!2.76e-18!49;UBERON:0002020!2.04e-17!34;UBERON:0003056!6.26e-17!49;UBERON:0003080!1.67e-15!40;UBERON:0002780!7.00e-15!39;UBERON:0001890!7.00e-15!39;UBERON:0006240!7.00e-15!39;UBERON:0002791!8.90e-15!29;UBERON:0003528!8.90e-15!29;UBERON:0001893!8.90e-15!29;UBERON:0000956!2.22e-10!21;UBERON:0001869!2.22e-10!21;UBERON:0000203!2.22e-10!21;UBERON:0000468!1.00e-08!333;UBERON:0002619!2.23e-08!17;UBERON:0002021!4.36e-08!10;UBERON:0000411!4.36e-08!10;UBERON:0001950!4.36e-08!10;UBERON:0000153!1.94e-07!94;UBERON:0007811!2.34e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.75e-24,73;UBERON:0001016,2.64e-23,75;UBERON:0002346,9.03e-23,64;UBERON:0003075,9.03e-23,64;UBERON:0007284,9.03e-23,64;UBERON:0000073,4.48e-22,54;UBERON:0004121,1.97e-21,95;UBERON:0000924,1.97e-21,95;UBERON:0006601,1.97e-21,95;UBERON:0001049,8.92e-21,52;UBERON:0005068,8.92e-21,52;UBERON:0006241,8.92e-21,52;UBERON:0007135,8.92e-21,52;UBERON:0010371,2.99e-20,73;UBERON:0002020,8.65e-19,34;UBERON:0000955,7.29e-18,47;UBERON:0006238,7.29e-18,47;UBERON:0003056,1.85e-17,49;UBERON:0002616,3.29e-17,46;UBERON:0003080,2.35e-16,40;UBERON:0003528,6.28e-16,29;UBERON:0002791,6.28e-16,29;UBERON:0001893,6.28e-16,29;UBERON:0002780,1.10e-15,39;UBERON:0001890,1.10e-15,39;UBERON:0006240,1.10e-15,39;UBERON:0010314,2.16e-13,92;UBERON:0000956,3.66e-11,21;UBERON:0001869,3.66e-11,21;UBERON:0000203,3.66e-11,21;UBERON:0002619,5.41e-09,17;UBERON:0002021,1.25e-08,10;UBERON:0000411,1.25e-08,10;UBERON:0001950,1.25e-08,10 | |||
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| ||
|short_description=p1@Jph4 | |||
}} | }} |
Latest revision as of 03:27, 26 September 2015
Short description: | p1@Jph4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Jph4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -35bp_to_ENSMUST00000133954_5end |
EntrezGene: | Jph4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.63e-14 | 23 |
neuroblast (sensu Vertebrata) | 8.63e-14 | 23 |
neuron | 1.20e-13 | 33 |
neuronal stem cell | 1.20e-13 | 33 |
neuroblast | 1.20e-13 | 33 |
electrically signaling cell | 1.20e-13 | 33 |
electrically responsive cell | 1.41e-09 | 39 |
electrically active cell | 1.41e-09 | 39 |
neural cell | 1.90e-08 | 43 |
ectodermal cell | 2.32e-08 | 44 |
neurectodermal cell | 2.32e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.75e-24 | 73 |
nervous system | 2.64e-23 | 75 |
neurectoderm | 9.03e-23 | 64 |
neural plate | 9.03e-23 | 64 |
presumptive neural plate | 9.03e-23 | 64 |
regional part of nervous system | 4.48e-22 | 54 |
ectoderm-derived structure | 1.97e-21 | 95 |
ectoderm | 1.97e-21 | 95 |
presumptive ectoderm | 1.97e-21 | 95 |
neural tube | 8.92e-21 | 52 |
neural rod | 8.92e-21 | 52 |
future spinal cord | 8.92e-21 | 52 |
neural keel | 8.92e-21 | 52 |
ecto-epithelium | 2.99e-20 | 73 |
gray matter | 8.65e-19 | 34 |
brain | 7.29e-18 | 47 |
future brain | 7.29e-18 | 47 |
pre-chordal neural plate | 1.85e-17 | 49 |
regional part of brain | 3.29e-17 | 46 |
anterior neural tube | 2.35e-16 | 40 |
brain grey matter | 6.28e-16 | 29 |
regional part of telencephalon | 6.28e-16 | 29 |
telencephalon | 6.28e-16 | 29 |
regional part of forebrain | 1.10e-15 | 39 |
forebrain | 1.10e-15 | 39 |
future forebrain | 1.10e-15 | 39 |
structure with developmental contribution from neural crest | 2.16e-13 | 92 |
cerebral cortex | 3.66e-11 | 21 |
cerebral hemisphere | 3.66e-11 | 21 |
pallium | 3.66e-11 | 21 |
regional part of cerebral cortex | 5.41e-09 | 17 |
occipital lobe | 1.25e-08 | 10 |
visual cortex | 1.25e-08 | 10 |
neocortex | 1.25e-08 | 10 |