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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008369
|DRA_sample_Accession=CAGE@SAMD00005430
|accession_numbers=CAGE;DRX008477;DRR009349;DRZ000774;DRZ002159
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005430
|accession_numbers=CAGE;DRX008477;DRR009349;DRZ000774;DRZ002159;DRZ012124;DRZ013509
|accession_numbers_RNASeq=sRNA-Seq;DRX037019;DRR041385;DRZ007027
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0002049,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001016,UBERON:0004535,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0002049,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001016,UBERON:0004535,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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AD2;;chr3:141747459..141747475,-!p1@TFDP2!0.13!9.53!TFDP2;;chr9:94186131..94186174,-!p2@NFIL3!0.13!9.34!NFIL3;;chr12:133657477..133657529,+!p1@ZNF140!0.13!8.77!ZNF140;;chr5:139487363..139487444,+!p1@PURA!0.13!8.58!PURA;;chr17:17726907..17726958,-!p2@SREBF1!0.13!6.86!SREBF1;;chr2:145274900..145274934,-!p4@ZEB2!0.13!6.67!ZEB2;;chr2:178257401..178257432,-!p4@NFE2L2!0.13!6.10!NFE2L2;;chr19:38146320..38146401,-!p1@ZFP30!0.13!5.91!ZFP30;;chr2:28616358..28616380,+!p3@FOSL2!0.13!5.53!FOSL2;;chr9:35732561..35732587,+!p3@CREB3!0.13!4.38!CREB3;;chr19:1652555..1652568,-!p2@TCF3!0.13!4.19!TCF3;;chr19:12146483..12146546,-!p1@ZNF433!0.13!3.62!ZNF433;;chr19:37096194..37096235,+!p1@ZNF382!0.13!3.05!ZNF382;;chr19:36134528..36134563,+!p1@ETV2!0.13!2.67!ETV2;;chr19:46271505..46271575,-!p2@SIX5!0.13!2.29!SIX5;;chr22:50247528..50247568,+!p2@ZBED4!0.13!2.10!ZBED4;;chr16:3285049..3285081,-!p3@ZNF200!0.13!1.91!ZNF200;;chr11:62369383..62369399,-!p6@MTA2!0.13!1.91!MTA2;;chr12:48298765..48298783,-!p2@VDR!0.13!1.72!VDR;;chr19:13134457..13134462,+!p5@NFIX!0.13!1.33!NFIX;;chr1:114302066..114302080,-!p2@PHTF1!0.13!1.33!PHTF1;;chr20:48807779..48807802,+!p10@CEBPB!0.13!1.14!CEBPB;;chr6:21594845..21594908,+!p6@SOX4!0.13!1.14!SOX4;;chr9:94186085..94186096,-!p3@NFIL3!0.13!1.14!NFIL3;;chr15:57211660..57211687,+!p6@TCF12!0.13!1.14!TCF12;;chr17:17723746..17723766,-!p5@SREBF1!0.13!1.14!SREBF1;;chr6:28234822..28234836,+!p1@ZNF187!0.13!0.95!ZNF187;;chr6:43139248..43139261,+!p4@SRF!0.13!0.95!SRF;;chr7:137686552..137686564,-!p9@CREB3L2!0.13!0.95!CREB3L2;;chr8:67525443..67525459,-!p2@MYBL1!0.13!0.95!MYBL1;;chr2:166326200..166326216,+!p1@CSRNP3!0.13!0.95!CSRNP3;;chr4:87928105..87928126,+!p13@AFF1!0.13!0.95!AFF1;;chr2:66662232..66662243,+!p5@MEIS1!0.13!0.76!MEIS1;;chr3:71632811..71632825,-!p19@FOXP1!0.13!0.76!FOXP1;;chr9:88969287..88969297,-!p3@ZCCHC6!0.13!0.76!ZCCHC6;;chr5:72743793..72743855,-!p4@FOXD1!0.13!0.57!FOXD1;;chr7:106826626..106826630,+!p3@HBP1!0.13!0.57!HBP1;;chr7:28725715..28725727,+!p3@CREB5!0.13!0.57!CREB5;;chr9:110250697..110250738,-!p2@KLF4!0.13!0.57!KLF4;;chr19:36545320..36545335,-!p5@THAP8!0.13!0.57!THAP8;;chr1:935519..935532,-!p4@HES4!0.13!0.57!HES4;;chr11:65686776..65686787,+!p9@DRAP1!0.13!0.57!DRAP1;;chr14:33408072..33408114,+!p2@NPAS3!0.13!0.57!NPAS3;;chr2:28615716..28615733,+!p1@FOSL2!0.12!56.81!FOSL2;;chr1:6845497..6845561,+!p1@CAMTA1!0.12!43.08!CAMTA1;;chr17:40719102..40719141,+!p1@MLX!0.12!37.55!MLX;;chr3:107241792..107241845,+!p1@BBX!0.12!26.50!BBX;;chr17:47492236..47492251,-!p1@PHB!0.12!16.20!PHB;;chr19:56092195..56092248,-!p1@ZNF579!0.12!12.01!ZNF579;;chr1:246729483..246729538,-!p2@TFB2M!0.12!10.68!TFB2M;;chr17:40540484..40540537,-!p2@STAT3!0.12!10.68!STAT3;;chr12:57916466..57916523,+!p2@MBD6!0.12!9.91!MBD6;;chr4:87856191..87856208,+!p2@AFF1!0.12!8.77!AFF1;;chr4:87928353..87928401,+!p4@AFF1!0.12!4.58!AFF1;;chr12:27485823..27485868,+!p2@ARNTL2!0.12!4.00!ARNTL2;;chr20:3388541..3388575,-!p2@C20orf194!0.12!3.81!C20orf194;;chr20:46130602..46130613,+!p3@NCOA3!0.12!2.67!NCOA3;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.12!2.48!ZFP112;;chr6:44233297..44233330,-!p2@NFKBIE!0.12!2.29!NFKBIE;;chr1:33721900..33721921,+!p2@ZNF362!0.12!2.10!ZNF362;;chr1:8763296..8763339,-!p9@RERE!0.12!2.10!RERE;;chr9:14083467..14083483,-!p4@NFIB!0.12!2.10!NFIB;;chr22:46546406..46546440,+!p1@PPARA!0.12!2.10!PPARA;;
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AD2;;chr3:141747459..141747475,-!p1@TFDP2!0.13!9.53!TFDP2;;chr9:94186131..94186174,-!p2@NFIL3!0.13!9.34!NFIL3;;chr12:133657477..133657529,+!p1@ZNF140!0.13!8.77!ZNF140;;chr5:139487363..139487444,+!p1@PURA!0.13!8.58!PURA;;chr17:17726907..17726958,-!p2@SREBF1!0.13!6.86!SREBF1;;chr2:145274900..145274934,-!p4@ZEB2!0.13!6.67!ZEB2;;chr2:178257401..178257432,-!p4@NFE2L2!0.13!6.10!NFE2L2;;chr19:38146320..38146401,-!p1@ZFP30!0.13!5.91!ZFP30;;chr2:28616358..28616380,+!p3@FOSL2!0.13!5.53!FOSL2;;chr9:35732561..35732587,+!p3@CREB3!0.13!4.38!CREB3;;chr19:1652555..1652568,-!p2@TCF3!0.13!4.19!TCF3;;chr19:12146483..12146546,-!p1@ZNF433!0.13!3.62!ZNF433;;chr19:37096194..37096235,+!p1@ZNF382!0.13!3.05!ZNF382;;chr19:36134528..36134563,+!p1@ETV2!0.13!2.67!ETV2;;chr19:46271505..46271575,-!p2@SIX5!0.13!2.29!SIX5;;chr22:50247528..50247568,+!p2@ZBED4!0.13!2.10!ZBED4;;chr16:3285049..3285081,-!p3@ZNF200!0.13!1.91!ZNF200;;chr11:62369383..62369399,-!p6@MTA2!0.13!1.91!MTA2;;chr12:48298765..48298783,-!p2@VDR!0.13!1.72!VDR;;chr19:13134457..13134462,+!p5@NFIX!0.13!1.33!NFIX;;chr1:114302066..114302080,-!p2@PHTF1!0.13!1.33!PHTF1;;chr20:48807779..48807802,+!p10@CEBPB!0.13!1.14!CEBPB;;chr6:21594845..21594908,+!p6@SOX4!0.13!1.14!SOX4;;chr9:94186085..94186096,-!p3@NFIL3!0.13!1.14!NFIL3;;chr15:57211660..57211687,+!p6@TCF12!0.13!1.14!TCF12;;chr17:17723746..17723766,-!p5@SREBF1!0.13!1.14!SREBF1;;chr6:28234822..28234836,+!p1@ZNF187!0.13!0.95!ZNF187;;chr6:43139248..43139261,+!p4@SRF!0.13!0.95!SRF;;chr7:137686552..137686564,-!p9@CREB3L2!0.13!0.95!CREB3L2;;chr8:67525443..67525459,-!p2@MYBL1!0.13!0.95!MYBL1;;chr2:166326200..166326216,+!p1@CSRNP3!0.13!0.95!CSRNP3;;chr4:87928105..87928126,+!p13@AFF1!0.13!0.95!AFF1;;chr2:66662232..66662243,+!p5@MEIS1!0.13!0.76!MEIS1;;chr3:71632811..71632825,-!p19@FOXP1!0.13!0.76!FOXP1;;chr9:88969287..88969297,-!p3@ZCCHC6!0.13!0.76!ZCCHC6;;chr5:72743793..72743855,-!p4@FOXD1!0.13!0.57!FOXD1;;chr7:106826626..106826630,+!p3@HBP1!0.13!0.57!HBP1;;chr7:28725715..28725727,+!p3@CREB5!0.13!0.57!CREB5;;chr9:110250697..110250738,-!p2@KLF4!0.13!0.57!KLF4;;chr19:36545320..36545335,-!p5@THAP8!0.13!0.57!THAP8;;chr1:935519..935532,-!p4@HES4!0.13!0.57!HES4;;chr11:65686776..65686787,+!p9@DRAP1!0.13!0.57!DRAP1;;chr14:33408072..33408114,+!p2@NPAS3!0.13!0.57!NPAS3;;chr2:28615716..28615733,+!p1@FOSL2!0.12!56.81!FOSL2;;chr1:6845497..6845561,+!p1@CAMTA1!0.12!43.08!CAMTA1;;chr17:40719102..40719141,+!p1@MLX!0.12!37.55!MLX;;chr3:107241792..107241845,+!p1@BBX!0.12!26.50!BBX;;chr17:47492236..47492251,-!p1@PHB!0.12!16.20!PHB;;chr19:56092195..56092248,-!p1@ZNF579!0.12!12.01!ZNF579;;chr1:246729483..246729538,-!p2@TFB2M!0.12!10.68!TFB2M;;chr17:40540484..40540537,-!p2@STAT3!0.12!10.68!STAT3;;chr12:57916466..57916523,+!p2@MBD6!0.12!9.91!MBD6;;chr4:87856191..87856208,+!p2@AFF1!0.12!8.77!AFF1;;chr4:87928353..87928401,+!p4@AFF1!0.12!4.58!AFF1;;chr12:27485823..27485868,+!p2@ARNTL2!0.12!4.00!ARNTL2;;chr20:3388541..3388575,-!p2@C20orf194!0.12!3.81!C20orf194;;chr20:46130602..46130613,+!p3@NCOA3!0.12!2.67!NCOA3;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.12!2.48!ZFP112;;chr6:44233297..44233330,-!p2@NFKBIE!0.12!2.29!NFKBIE;;chr1:33721900..33721921,+!p2@ZNF362!0.12!2.10!ZNF362;;chr1:8763296..8763339,-!p9@RERE!0.12!2.10!RERE;;chr9:14083467..14083483,-!p4@NFIB!0.12!2.10!NFIB;;chr22:46546406..46546440,+!p1@PPARA!0.12!2.10!PPARA;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002590;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg38.nobarcode.ctss.bed.gz
|id=FF:11391-118C5
|id=FF:11391-118C5
|is_a=EFO:0002091;;FF:0000170
|is_a=EFO:0002091;;FF:0000170
|is_obsolete=
|is_obsolete=
|library_id=CNhs12004
|library_id=CNhs12004
|library_id_phase_based=2:CNhs12004
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11391
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.TAGCTT.11391
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11391
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.TAGCTT.11391
|name=Smooth Muscle Cells - Brain Vascular, donor3
|name=Smooth Muscle Cells - Brain Vascular, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12004,LSID837,release011,COMPLETED
|profile_hcage=CNhs12004,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|profile_srnaseq=SRhi10003,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 65: Line 82:
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|sample_category=primary cells
Line 88: Line 106:
|top_motifs=TAL1_TCF{3,4,12}:1.81750057994;NR3C1:1.63375765397;TFAP4:1.44022423092;NKX3-1:1.40479404697;HSF1,2:1.22160590138;AIRE:1.17673295162;GLI1..3:1.09668816886;TEAD1:1.07143708582;SRF:1.02398890324;RXRA_VDR{dimer}:1.02049636549;HOX{A5,B5}:1.01411114318;EVI1:0.962734447409;GZF1:0.946794931988;MYBL2:0.879036421576;XBP1:0.870731418691;EBF1:0.8333020529;IKZF1:0.805375747959;SOX17:0.782578060573;NKX2-1,4:0.757434280851;ATF6:0.74603025356;UFEwm:0.688570139893;TLX1..3_NFIC{dimer}:0.684887621036;GTF2A1,2:0.66096439164;TEF:0.642721270467;MAFB:0.639785954017;EN1,2:0.639631720733;SP1:0.639600568087;TFCP2:0.591899082833;NKX2-2,8:0.59051616557;NANOG{mouse}:0.582100282111;ZNF238:0.578114071497;MAZ:0.573506321786;NR6A1:0.559627395295;NFATC1..3:0.558860847777;PAX1,9:0.54371431265;bHLH_family:0.532456777546;NFE2L1:0.515481087813;PATZ1:0.514666327744;TFAP2{A,C}:0.501803803463;ESR1:0.4919388358;RXR{A,B,G}:0.489605080666;TBX4,5:0.468245430695;SPZ1:0.423881779359;PAX5:0.414784649211;TOPORS:0.402456398388;HMGA1,2:0.390826399978;HIC1:0.387426530722;HOXA9_MEIS1:0.386266545989;LHX3,4:0.385471250212;HMX1:0.384092989115;POU3F1..4:0.381566525403;ADNP_IRX_SIX_ZHX:0.374766239057;NFE2L2:0.361476655008;GFI1B:0.36106070004;SREBF1,2:0.346843949627;ALX4:0.341369811405;CDC5L:0.338004959901;GTF2I:0.336613170792;ZBTB6:0.326226289045;ESRRA:0.321215906046;MTE{core}:0.3178787243;TP53:0.317176292285;MZF1:0.311029253009;NR5A1,2:0.283929983336;KLF4:0.275226615142;AHR_ARNT_ARNT2:0.274107839376;PPARG:0.270273207679;TFAP2B:0.216414507371;ZIC1..3:0.192403684245;ZNF384:0.191717180401;HNF4A_NR2F1,2:0.158522398737;HLF:0.123623753388;ONECUT1,2:0.122657154977;HNF1A:0.116460683418;XCPE1{core}:0.112376440706;STAT5{A,B}:0.106777387901;POU1F1:0.1038191554;NHLH1,2:0.0923708837062;ZNF148:0.0894416793985;ARID5B:0.0620895889956;MYFfamily:0.057114486233;PRRX1,2:0.0506341326378;STAT2,4,6:0.0502144717288;TBP:0.0448497883786;NKX2-3_NKX2-5:0.043580311549;NR1H4:0.0332244341843;ZBTB16:0.0320560248156;HES1:0.028576227102;TLX2:0.0159794347222;IRF1,2:-0.0149529609611;ALX1:-0.027612638943;SMAD1..7,9:-0.0423286307804;HIF1A:-0.0556627650096;AR:-0.0636734275742;EGR1..3:-0.0661992967403;CDX1,2,4:-0.0682360435563;DBP:-0.0743634632723;ZNF423:-0.0835868757431;GATA4:-0.08518643531;ZNF143:-0.0864068564436;SOX5:-0.0929090370297;STAT1,3:-0.0981259045621;ELK1,4_GABP{A,B1}:-0.121695781926;FOXL1:-0.134943959867;PAX3,7:-0.139129550649;GFI1:-0.146211321347;BACH2:-0.147426045626;ZFP161:-0.153606441518;YY1:-0.156517043306;GCM1,2:-0.160946919948;FOSL2:-0.164160309553;HOX{A4,D4}:-0.164289690968;IRF7:-0.165330888454;HAND1,2:-0.165637658551;TFDP1:-0.172072129551;PAX2:-0.192099113294;NRF1:-0.198439001614;PRDM1:-0.221966703854;NFIX:-0.223664657108;NKX3-2:-0.226199716176;FOS_FOS{B,L1}_JUN{B,D}:-0.257501962972;RUNX1..3:-0.258427771953;ETS1,2:-0.268228257398;PAX6:-0.268713522879;REST:-0.27335003971;NFE2:-0.292935334994;MEF2{A,B,C,D}:-0.299408774012;CEBPA,B_DDIT3:-0.305523779182;NFKB1_REL_RELA:-0.317553516412;LMO2:-0.33883448353;NKX6-1,2:-0.348057050218;MED-1{core}:-0.348848639642;NFY{A,B,C}:-0.360831674955;FOXP3:-0.376081682535;CRX:-0.377486503383;JUN:-0.378248319962;FOX{I1,J2}:-0.382873852199;POU5F1:-0.400819279177;HOX{A6,A7,B6,B7}:-0.422770316498;ATF2:-0.434216667443;LEF1_TCF7_TCF7L1,2:-0.434361177098;PAX8:-0.434794472107;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.435048146763;RORA:-0.44318494723;TGIF1:-0.448519974314;FOXD3:-0.463129291696;RREB1:-0.467092375332;ELF1,2,4:-0.474436319745;MTF1:-0.478067932043;FOXA2:-0.486289399685;FOXM1:-0.486773582034;RFX1:-0.488844477669;DMAP1_NCOR{1,2}_SMARC:-0.498494135318;SPIB:-0.509178289762;BREu{core}:-0.515319218819;GATA6:-0.524090567669;FOXN1:-0.537326514152;NFIL3:-0.549241709892;OCT4_SOX2{dimer}:-0.549264378257;MYB:-0.584642325698;NANOG:-0.586791104051;RBPJ:-0.592853028707;SNAI1..3:-0.605051739;FOX{D1,D2}:-0.608864542659;SPI1:-0.609121557951;FOXP1:-0.614241867229;FOX{F1,F2,J1}:-0.634407928243;ATF5_CREB3:-0.639161696697;FOXO1,3,4:-0.668677278048;PAX4:-0.668763081865;POU6F1:-0.668880594379;CREB1:-0.703903780118;RFX2..5_RFXANK_RFXAP:-0.723122576691;E2F1..5:-0.743812799403;CUX2:-0.803965474454;SOX2:-0.809258405757;PITX1..3:-0.80929513057;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.812140720061;HBP1_HMGB_SSRP1_UBTF:-0.813618006839;EP300:-0.831045431823;ATF4:-0.841801041789;PBX1:-0.891706700679;VSX1,2:-0.896957312555;ZEB1:-0.89767098106;IKZF2:-0.939015194095;SOX{8,9,10}:-0.943287163259;BPTF:-0.953133311634;MYOD1:-1.0501701313;POU2F1..3:-1.05126951475;T:-1.10111829843;FOXQ1:-1.1115118833;PDX1:-1.37477207495
|top_motifs=TAL1_TCF{3,4,12}:1.81750057994;NR3C1:1.63375765397;TFAP4:1.44022423092;NKX3-1:1.40479404697;HSF1,2:1.22160590138;AIRE:1.17673295162;GLI1..3:1.09668816886;TEAD1:1.07143708582;SRF:1.02398890324;RXRA_VDR{dimer}:1.02049636549;HOX{A5,B5}:1.01411114318;EVI1:0.962734447409;GZF1:0.946794931988;MYBL2:0.879036421576;XBP1:0.870731418691;EBF1:0.8333020529;IKZF1:0.805375747959;SOX17:0.782578060573;NKX2-1,4:0.757434280851;ATF6:0.74603025356;UFEwm:0.688570139893;TLX1..3_NFIC{dimer}:0.684887621036;GTF2A1,2:0.66096439164;TEF:0.642721270467;MAFB:0.639785954017;EN1,2:0.639631720733;SP1:0.639600568087;TFCP2:0.591899082833;NKX2-2,8:0.59051616557;NANOG{mouse}:0.582100282111;ZNF238:0.578114071497;MAZ:0.573506321786;NR6A1:0.559627395295;NFATC1..3:0.558860847777;PAX1,9:0.54371431265;bHLH_family:0.532456777546;NFE2L1:0.515481087813;PATZ1:0.514666327744;TFAP2{A,C}:0.501803803463;ESR1:0.4919388358;RXR{A,B,G}:0.489605080666;TBX4,5:0.468245430695;SPZ1:0.423881779359;PAX5:0.414784649211;TOPORS:0.402456398388;HMGA1,2:0.390826399978;HIC1:0.387426530722;HOXA9_MEIS1:0.386266545989;LHX3,4:0.385471250212;HMX1:0.384092989115;POU3F1..4:0.381566525403;ADNP_IRX_SIX_ZHX:0.374766239057;NFE2L2:0.361476655008;GFI1B:0.36106070004;SREBF1,2:0.346843949627;ALX4:0.341369811405;CDC5L:0.338004959901;GTF2I:0.336613170792;ZBTB6:0.326226289045;ESRRA:0.321215906046;MTE{core}:0.3178787243;TP53:0.317176292285;MZF1:0.311029253009;NR5A1,2:0.283929983336;KLF4:0.275226615142;AHR_ARNT_ARNT2:0.274107839376;PPARG:0.270273207679;TFAP2B:0.216414507371;ZIC1..3:0.192403684245;ZNF384:0.191717180401;HNF4A_NR2F1,2:0.158522398737;HLF:0.123623753388;ONECUT1,2:0.122657154977;HNF1A:0.116460683418;XCPE1{core}:0.112376440706;STAT5{A,B}:0.106777387901;POU1F1:0.1038191554;NHLH1,2:0.0923708837062;ZNF148:0.0894416793985;ARID5B:0.0620895889956;MYFfamily:0.057114486233;PRRX1,2:0.0506341326378;STAT2,4,6:0.0502144717288;TBP:0.0448497883786;NKX2-3_NKX2-5:0.043580311549;NR1H4:0.0332244341843;ZBTB16:0.0320560248156;HES1:0.028576227102;TLX2:0.0159794347222;IRF1,2:-0.0149529609611;ALX1:-0.027612638943;SMAD1..7,9:-0.0423286307804;HIF1A:-0.0556627650096;AR:-0.0636734275742;EGR1..3:-0.0661992967403;CDX1,2,4:-0.0682360435563;DBP:-0.0743634632723;ZNF423:-0.0835868757431;GATA4:-0.08518643531;ZNF143:-0.0864068564436;SOX5:-0.0929090370297;STAT1,3:-0.0981259045621;ELK1,4_GABP{A,B1}:-0.121695781926;FOXL1:-0.134943959867;PAX3,7:-0.139129550649;GFI1:-0.146211321347;BACH2:-0.147426045626;ZFP161:-0.153606441518;YY1:-0.156517043306;GCM1,2:-0.160946919948;FOSL2:-0.164160309553;HOX{A4,D4}:-0.164289690968;IRF7:-0.165330888454;HAND1,2:-0.165637658551;TFDP1:-0.172072129551;PAX2:-0.192099113294;NRF1:-0.198439001614;PRDM1:-0.221966703854;NFIX:-0.223664657108;NKX3-2:-0.226199716176;FOS_FOS{B,L1}_JUN{B,D}:-0.257501962972;RUNX1..3:-0.258427771953;ETS1,2:-0.268228257398;PAX6:-0.268713522879;REST:-0.27335003971;NFE2:-0.292935334994;MEF2{A,B,C,D}:-0.299408774012;CEBPA,B_DDIT3:-0.305523779182;NFKB1_REL_RELA:-0.317553516412;LMO2:-0.33883448353;NKX6-1,2:-0.348057050218;MED-1{core}:-0.348848639642;NFY{A,B,C}:-0.360831674955;FOXP3:-0.376081682535;CRX:-0.377486503383;JUN:-0.378248319962;FOX{I1,J2}:-0.382873852199;POU5F1:-0.400819279177;HOX{A6,A7,B6,B7}:-0.422770316498;ATF2:-0.434216667443;LEF1_TCF7_TCF7L1,2:-0.434361177098;PAX8:-0.434794472107;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.435048146763;RORA:-0.44318494723;TGIF1:-0.448519974314;FOXD3:-0.463129291696;RREB1:-0.467092375332;ELF1,2,4:-0.474436319745;MTF1:-0.478067932043;FOXA2:-0.486289399685;FOXM1:-0.486773582034;RFX1:-0.488844477669;DMAP1_NCOR{1,2}_SMARC:-0.498494135318;SPIB:-0.509178289762;BREu{core}:-0.515319218819;GATA6:-0.524090567669;FOXN1:-0.537326514152;NFIL3:-0.549241709892;OCT4_SOX2{dimer}:-0.549264378257;MYB:-0.584642325698;NANOG:-0.586791104051;RBPJ:-0.592853028707;SNAI1..3:-0.605051739;FOX{D1,D2}:-0.608864542659;SPI1:-0.609121557951;FOXP1:-0.614241867229;FOX{F1,F2,J1}:-0.634407928243;ATF5_CREB3:-0.639161696697;FOXO1,3,4:-0.668677278048;PAX4:-0.668763081865;POU6F1:-0.668880594379;CREB1:-0.703903780118;RFX2..5_RFXANK_RFXAP:-0.723122576691;E2F1..5:-0.743812799403;CUX2:-0.803965474454;SOX2:-0.809258405757;PITX1..3:-0.80929513057;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.812140720061;HBP1_HMGB_SSRP1_UBTF:-0.813618006839;EP300:-0.831045431823;ATF4:-0.841801041789;PBX1:-0.891706700679;VSX1,2:-0.896957312555;ZEB1:-0.89767098106;IKZF2:-0.939015194095;SOX{8,9,10}:-0.943287163259;BPTF:-0.953133311634;MYOD1:-1.0501701313;POU2F1..3:-1.05126951475;T:-1.10111829843;FOXQ1:-1.1115118833;PDX1:-1.37477207495
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11391-118C5;search_select_hide=table117:FF:11391-118C5
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Smooth Muscle Cells - Brain Vascular, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12004
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stagefetus
sexunknown
agefetal
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number4342
catalog numberSC1105
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005430
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12004 CAGE DRX008477 DRR009349
Accession ID Hg19

Library idBAMCTSS
CNhs12004 DRZ000774 DRZ002159
Accession ID Hg38

Library idBAMCTSS
CNhs12004 DRZ012124 DRZ013509
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005430
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.TAGCTT sRNA-Seq DRX037019 DRR041385
Accession ID Hg19

Library idBAMCTSS
SRhi10003.TAGCTT DRZ007027


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.143
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.103
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.246
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0117
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.118
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.135
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.434
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.204
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.387
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.461
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0758
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0758
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.234
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.129
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.14
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0758
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.565
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.246
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.746
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.715
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.463
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12004

Jaspar motifP-value
MA0002.20.152
MA0003.10.229
MA0004.10.642
MA0006.10.0515
MA0007.10.105
MA0009.10.295
MA0014.10.775
MA0017.10.538
MA0018.22.59631e-4
MA0019.10.831
MA0024.15.70974e-6
MA0025.10.00165
MA0027.10.296
MA0028.10.102
MA0029.10.203
MA0030.10.0877
MA0031.10.0122
MA0035.20.377
MA0038.10.805
MA0039.20.794
MA0040.10.957
MA0041.10.221
MA0042.10.421
MA0043.15.03715e-4
MA0046.10.638
MA0047.20.276
MA0048.10.515
MA0050.10.216
MA0051.10.534
MA0052.17.70665e-4
MA0055.10.439
MA0057.10.78
MA0058.10.677
MA0059.10.189
MA0060.10.0179
MA0061.10.0053
MA0062.29.55257e-6
MA0065.20.288
MA0066.10.572
MA0067.10.00865
MA0068.10.841
MA0069.10.26
MA0070.10.955
MA0071.10.285
MA0072.10.393
MA0073.10.739
MA0074.10.178
MA0076.10.0109
MA0077.10.702
MA0078.10.325
MA0079.20.4
MA0080.29.40174e-10
MA0081.10.00858
MA0083.19.1041e-4
MA0084.10.173
MA0087.10.0706
MA0088.10.63
MA0090.19.70695e-6
MA0091.10.0197
MA0092.10.233
MA0093.10.772
MA0099.20.00304
MA0100.10.171
MA0101.10.0188
MA0102.20.711
MA0103.10.00439
MA0104.20.0143
MA0105.10.0188
MA0106.10.56
MA0107.10.0131
MA0108.20.209
MA0111.10.974
MA0112.20.227
MA0113.10.403
MA0114.10.372
MA0115.10.168
MA0116.10.0537
MA0117.10.236
MA0119.10.298
MA0122.10.846
MA0124.10.502
MA0125.10.945
MA0131.10.15
MA0135.10.118
MA0136.14.22951e-13
MA0137.20.754
MA0138.20.327
MA0139.10.42
MA0140.10.638
MA0141.10.966
MA0142.10.458
MA0143.10.681
MA0144.10.194
MA0145.10.216
MA0146.10.3
MA0147.10.0119
MA0148.10.642
MA0149.10.356
MA0150.10.112
MA0152.10.86
MA0153.10.215
MA0154.10.221
MA0155.10.185
MA0156.16.61796e-8
MA0157.10.0431
MA0159.10.314
MA0160.10.353
MA0162.10.0227
MA0163.10.746
MA0164.10.619
MA0258.10.724
MA0259.10.113



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12004

Novel motifP-value
10.32
100.221
1000.701
1010.452
1020.0619
1030.628
1040.575
1050.158
1060.451
1070.128
1080.365
1090.619
110.992
1100.895
1110.129
1120.349
1130.649
1140.654
1150.145
1160.033
1170.54
1180.299
1190.742
120.189
1200.363
1210.67
1220.0175
1230.0102
1240.289
1250.0584
1260.976
1270.758
1280.22
1290.334
130.321
1300.446
1310.935
1320.445
1330.494
1340.439
1350.254
1360.234
1370.0261
1380.891
1390.512
140.209
1400.338
1410.128
1420.743
1430.46
1440.51
1450.394
1460.799
1470.109
1480.64
1490.315
150.544
1500.413
1510.358
1520.0286
1530.568
1540.415
1550.00645
1560.3
1570.384
1580.0114
1590.405
160.077
1600.781
1610.806
1620.358
1630.131
1640.299
1650.0491
1660.231
1670.511
1680.103
1690.225
170.86
180.958
190.253
20.431
200.34
210.88
220.249
230.37
240.46
250.0384
260.312
270.505
280.194
290.779
30.948
300.38
310.366
322.96932e-18
330.849
340.513
350.145
360.0378
370.684
380.372
390.586
40.0694
400.286
410.0824
420.353
430.56
440.282
450.94
460.718
470.728
480.852
490.103
50.614
500.834
510.521
520.723
530.152
540.66
550.245
560.788
570.896
580.0246
590.699
60.569
600.462
610.938
620.0655
630.938
640.542
650.831
660.904
670.273
680.864
690.667
70.215
700.322
710.505
720.975
730.0243
740.834
750.116
760.494
770.245
780.961
790.0801
80.373
800.135
810.868
820.813
830.92
840.855
850.458
860.964
870.0272
880.997
890.693
90.791
900.38
910.776
920.158
930.118
940.619
950.442
960.389
970.418
980.0872
992.03874e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12004


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002590 (smooth muscle cell of the brain vasculature)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0002049 (vasculature)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001016 (nervous system)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000170 (human smooth muscle cell of the brain vasculature sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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