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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008494
|DRA_sample_Accession=CAGE@SAMD00005731
|accession_numbers=CAGE;DRX008602;DRR009474;DRZ000899;DRZ002284
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005731
|accession_numbers=CAGE;DRX008602;DRR009474;DRZ000899;DRZ002284;DRZ012249;DRZ013634
|accession_numbers_RNASeq=sRNA-Seq;DRX037314;DRR041680;DRZ007322
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0002204,UBERON:0001434
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0002204,UBERON:0001434
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|donor= biol_rep3 (A3 T0)
|expression_enrichment_score=chr6:45296048..45296082,+!p1@RUNX2!2.31!229.87!RUNX2;;chr12:53730126..53730146,-!p1@SP7!2.15!138.70!SP7;;chr12:53730147..53730177,-!p2@SP7!2.12!131.27!SP7;;chr7:96654133..96654150,-!p1@DLX5!2.00!99.09!DLX5;;chr2:200322654..200322707,-!p2@SATB2!1.88!107.67!SATB2;;chr5:88178983..88179012,-!p1@MEF2C!1.76!413.54!MEF2C;;chr17:48072574..48072597,-!p1@DLX3!1.74!54.29!DLX3;;chr6:45296191..45296203,+!p13@RUNX2!1.65!43.32!RUNX2;;chr1:25291475..25291511,-!p2@RUNX3!1.56!35.64!RUNX3;;chr2:172967621..172967637,-!p1@DLX2!1.51!81.44!DLX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.50!32.34!GLIS1;;chrX:82763292..82763317,+!p1@POU3F4!1.49!30.12!POU3F4;;chr11:46299199..46299233,+!p1@CREB3L1!1.43!130.94!CREB3L1;;chr9:132427883..132427951,+!p2@PRRX2!1.41!25.00!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.37!22.28!ZBED1;;chr1:151032860..151032918,+!p1@MLLT11!1.32!227.73!MLLT11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.32!19.72!HOXC5;;chr12:53730178..53730189,-!p3@SP7!1.31!19.31!SP7;;chr1:151032922..151032951,+!p2@MLLT11!1.26!28.05!MLLT11;;chr3:157824001..157824078,-!p2@SHOX2!1.25!16.67!SHOX2;;chr9:132427972..132428056,+!p1@PRRX2!1.24!21.45!PRRX2;;chrX:57619083..57619113,+!p1@ZXDB!1.24!16.25!ZXDB;;chr8:77593474..77593612,+!p1@ZFHX4!1.17!58.25!ZFHX4;;chr1:180199393..180199426,+!p1@LHX4!1.17!13.70!LHX4;;chr8:116681409..116681431,-!p2@TRPS1!1.15!36.22!TRPS1;;chr2:121493425..121493474,+!p1@GLI2!1.15!29.13!GLI2;;chr2:200323414..200323455,-!p1@SATB2!1.12!26.24!SATB2;;chr7:27205136..27205164,-!p1@HOXA9!1.10!11.63!HOXA9;;chr11:63684602..63684664,-!p1@RCOR2!1.09!22.61!RCOR2;;chr3:157823517..157823562,-!p1@SHOX2!1.08!11.80!SHOX2;;chr5:88179017..88179046,-!p2@MEF2C!1.07!43.65!MEF2C;;chr12:53729546..53729565,-!p4@SP7!1.07!10.81!SP7;;chr8:77593448..77593471,+!p2@ZFHX4!1.06!10.40!ZFHX4;;chr6:85474299..85474324,-!p1@TBX18!1.04!17.82!TBX18;;chr5:134369905..134369972,-!p1@PITX1!1.03!14.93!PITX1;;chr7:96635178..96635181,+!p1@DLX6!1.03!9.82!DLX6;;chr9:126774018..126774055,+!p1@LHX2!1.03!9.82!LHX2;;chrX:57936237..57936264,-!p1@ZXDA!1.03!9.74!ZXDA;;chr2:200322229..200322251,-!p3@SATB2!1.02!9.49!SATB2;;chr7:27224842..27224872,-!p1@HOXA11!1.02!9.41!HOXA11;;chr5:133450365..133450444,+!p1@TCF7!1.01!42.57!TCF7;;chr2:145277640..145277771,-!p1@ZEB2!1.00!123.52!ZEB2;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.91!HOXB6;;chr2:121493492..121493537,+!p2@GLI2!0.99!14.77!GLI2;;chr18:76739816..76739822,+!p1@SALL3!0.99!8.66!SALL3;;chr5:321810..321877,+!p1@AHRR!0.98!27.64!AHRR;;chr7:35293685..35293718,-!p1@TBX20!0.98!8.58!TBX20;;chr7:27205106..27205134,-!p2@HOXA9!0.97!8.33!HOXA9;;chr17:48046881..48046905,+!p5@DLX4!0.97!8.33!DLX4;;chr17:48046642..48046667,+!p3@DLX4!0.97!8.25!DLX4;;chr7:96654026..96654061,-!p2@DLX5!0.95!7.84!DLX5;;chr6:45296266..45296277,+!p34@RUNX2!0.93!7.59!RUNX2;;chr7:27196267..27196311,-!p1@HOXA7!0.93!7.51!HOXA7;;chr11:44331576..44331650,-!p1@ALX4!0.93!7.43!ALX4;;chr5:3595977..3595999,+!p1@IRX1!0.92!7.34!IRX1;;chr5:88185134..88185147,-!p15@MEF2C!0.92!7.34!MEF2C;;chr5:3595934..3595957,+!p2@IRX1!0.91!7.10!IRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.90!33.17!FOXD1;;chr17:46622440..46622477,-!p5@HOXB2!0.90!7.92!HOXB2;;chr7:96634878..96634900,+!p2@DLX6!0.90!6.93!DLX6;;chr7:27192185..27192209,-!p1@HOXA3!0.89!6.68!HOXA3;;chr2:172950227..172950249,+!p2@DLX1!0.89!6.68!DLX1;;chr6:20402102..20402152,+!p1@E2F3!0.88!28.22!E2F3;;chr8:145669791..145669834,-!p1@TONSL!0.88!19.55!TONSL;;chr3:114343826..114343869,-!p4@ZBTB20!0.88!13.78!ZBTB20;;chr1:23857325..23857416,-!p2@E2F2!0.88!7.76!E2F2;;chrX:82763265..82763283,+!p2@POU3F4!0.88!6.60!POU3F4;;chr12:53729525..53729541,-!p5@SP7!0.88!6.52!SP7;;chr1:23857698..23857733,-!p1@E2F2!0.87!12.29!E2F2;;chr20:22565185..22565223,-!p3@FOXA2!0.87!6.35!FOXA2;;chr9:124976328..124976372,-!p2@LHX6!0.87!6.35!LHX6;;chr17:48046543..48046575,+!p2@DLX4!0.87!6.35!DLX4;;chr6:31126291..31126399,+!p1@TCF19!0.86!63.37!TCF19;;chr2:200322723..200322739,-!p6@SATB2!0.86!6.27!SATB2;;chr2:42721205..42721307,+!p4@MTA3!0.86!6.19!MTA3;;chr9:114287433..114287513,+!p1@ZNF483!0.84!16.09!ZNF483;;chr6:85473156..85473210,-!p2@TBX18!0.84!7.26!TBX18;;chr19:58095501..58095535,+!p1@ZIK1!0.83!21.53!ZIK1;;chrX:84499081..84499115,+!p2@ZNF711!0.83!8.75!ZNF711;;chr19:38720294..38720348,-!p1@DPF1!0.83!7.34!DPF1;;chr6:45296028..45296034,+!p24@RUNX2!0.83!5.78!RUNX2;;chr3:114343870..114343887,-!p9@ZBTB20!0.82!5.61!ZBTB20;;chr16:54964740..54964789,+!p1@IRX5!0.81!8.17!IRX5;;chr6:28321909..28321965,-!p3@ZNF323!0.81!5.53!ZNF323;;chr7:27213893..27213954,-!p1@HOXA10!0.81!5.53!HOXA10;;chr12:54393880..54393962,+!p1@HOXC9!0.81!5.45!HOXC9;;chr2:200320768..200320800,-!p4@SATB2!0.81!5.45!SATB2;;chr20:39317868..39317884,-!p1@MAFB!0.80!67.91!MAFB;;chr8:124286775..124286860,-!p2@ZHX1!0.80!24.92!ZHX1;;chr5:174151553..174151610,+!p1@MSX2!0.80!9.16!MSX2;;chr2:176973498..176973524,+!p1@HOXD10!0.80!5.28!HOXD10;;chr19:58111241..58111292,+!p1@ZNF530!0.79!18.89!ZNF530;;chr2:71127699..71127744,+!p1@VAX2!0.79!11.30!VAX2;;chr11:4629953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Line 40: Line 44:
|fonse_treatment_closure=EFO:0000369,FF:0000332,FF:0000593,FF:12858-137D5
|fonse_treatment_closure=EFO:0000369,FF:0000332,FF:0000593,FF:12858-137D5
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|id=FF:12858-137D5
|id=FF:12858-137D5
|is_a=EFO:0002091;;FF:0000593
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|is_obsolete=
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|library_id=CNhs12952
|library_id=CNhs12952
|name=Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)
|library_id_phase_based=2:CNhs12952
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10065.GTTTCG.12858
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12858
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10065.GTTTCG.12858
|name=Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification
|namespace=FANTOM5
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Line 64: Line 81:
|rna_sample_type=
|rna_sample_type=
|rna_tube_id=137D5
|rna_tube_id=137D5
|rna_weight_ug=5.30
|rna_weight_ug=5.3
|rnaseq_library_id=SRhi10065.GTTTCG
|sample_age=
|sample_age=
|sample_category=time courses
|sample_category=time courses
Line 86: Line 104:
|sample_strain=
|sample_strain=
|sample_tissue=
|sample_tissue=
|time= 00hr00min
|timecourse=Saos_calcification
|top_motifs=PDX1:3.34856306467;TFDP1:2.00479404236;PITX1..3:1.824789371;VSX1,2:1.82285913951;E2F1..5:1.72389785631;HOX{A4,D4}:1.716375558;NFY{A,B,C}:1.67571996921;PRRX1,2:1.62248633576;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58047538917;NRF1:1.56915253589;POU1F1:1.50436344848;NKX2-3_NKX2-5:1.49272384955;ZNF143:1.25700381361;FOXA2:1.16285553122;NKX3-1:1.14511895242;GFI1:1.12885732654;YY1:1.09517099654;EN1,2:1.07061535412;FOXP1:1.0156728378;CUX2:0.948017872695;TOPORS:0.938449582549;MEF2{A,B,C,D}:0.923044675382;SOX17:0.906532900886;HIC1:0.893481246557;BREu{core}:0.855944916673;NANOG:0.850730077912;EVI1:0.778542666747;NFIX:0.745257423361;CDC5L:0.734446447709;TGIF1:0.703217365233;HIF1A:0.685538593457;NKX6-1,2:0.678865522454;STAT5{A,B}:0.674982335554;FOXQ1:0.670332603821;NKX2-1,4:0.669600406314;PBX1:0.661003773974;FOX{F1,F2,J1}:0.660523250562;LEF1_TCF7_TCF7L1,2:0.586047309503;MYB:0.571412454823;ELK1,4_GABP{A,B1}:0.534980099618;AHR_ARNT_ARNT2:0.532550309193;PAX2:0.485851803527;HES1:0.480225866788;PAX8:0.479328191766;T:0.465366494983;MZF1:0.450910874129;SOX{8,9,10}:0.437796282483;POU3F1..4:0.43420464522;SREBF1,2:0.429828820965;NFE2L2:0.427215900089;PAX4:0.420114355837;LHX3,4:0.416891272161;ATF4:0.403428585431;SP1:0.403052217796;PAX1,9:0.392490883767;PAX6:0.391211082541;ZNF384:0.372429610305;ZFP161:0.361242305883;ONECUT1,2:0.350796897378;TEAD1:0.285986353564;ATF6:0.28140347985;PAX3,7:0.262952781293;RUNX1..3:0.257816152633;FOX{I1,J2}:0.253274484518;RBPJ:0.234289813922;ZNF423:0.227612989714;FOXD3:0.225584278883;JUN:0.217894192633;MYBL2:0.216530159613;RORA:0.212874688947;DBP:0.202811649965;STAT1,3:0.199142069362;CDX1,2,4:0.19203615022;ZBTB16:0.185904049265;IKZF2:0.149509749605;RREB1:0.141869484314;TFAP2B:0.140333037193;GTF2I:0.140310622128;ATF5_CREB3:0.130102283415;OCT4_SOX2{dimer}:0.125901555075;FOXM1:0.118738886951;NR3C1:0.111556556927;NR1H4:0.0928335710051;HOX{A5,B5}:0.0783543677506;XCPE1{core}:0.0738398069923;POU6F1:0.0462695035528;IKZF1:0.0417631018968;ADNP_IRX_SIX_ZHX:0.0414091331149;TEF:0.0387390161162;EGR1..3:0.032068342969;HOXA9_MEIS1:0.0238284633509;RFX1:0.00943879657165;TBX4,5:-0.000137778184734;CREB1:-0.000451496978721;XBP1:-0.00134397830103;bHLH_family:-0.0139489673546;AIRE:-0.0224114650458;FOXN1:-0.0287028652026;AR:-0.043790796759;HNF1A:-0.0465188614363;RXR{A,B,G}:-0.0611319043853;PATZ1:-0.0720533671655;NFE2:-0.0733327636794;SOX2:-0.0758739656992;NR6A1:-0.0962340579678;ARID5B:-0.110301356634;MYFfamily:-0.116310123681;ESR1:-0.125727331342;ZBTB6:-0.127697781047;NR5A1,2:-0.130756664964;POU5F1:-0.142366460344;MED-1{core}:-0.159446573664;FOSL2:-0.171297911915;MAZ:-0.183419516947;ESRRA:-0.189382400097;ELF1,2,4:-0.190117088793;NHLH1,2:-0.195460615543;ZIC1..3:-0.195906006843;BACH2:-0.209323939154;IRF7:-0.211160920955;PAX5:-0.213658754462;GZF1:-0.216903708285;MTE{core}:-0.217533901855;GATA6:-0.221592995602;CRX:-0.242117461352;PRDM1:-0.247918160764;FOS_FOS{B,L1}_JUN{B,D}:-0.257539168813;RFX2..5_RFXANK_RFXAP:-0.283624140397;FOXP3:-0.284886985002;FOXL1:-0.297984460668;TFAP4:-0.299895327421;GCM1,2:-0.300716633111;DMAP1_NCOR{1,2}_SMARC:-0.304620783907;HLF:-0.308421155361;ZNF238:-0.308811759511;GTF2A1,2:-0.315443915464;EBF1:-0.330110419471;HNF4A_NR2F1,2:-0.330398195349;NKX2-2,8:-0.340440423202;GFI1B:-0.346787471318;REST:-0.36313308099;SOX5:-0.371877598641;NFE2L1:-0.382116561605;SMAD1..7,9:-0.382601114897;TP53:-0.387131061981;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.388307807188;TLX1..3_NFIC{dimer}:-0.391071528956;ALX4:-0.422732335365;GLI1..3:-0.443035429652;BPTF:-0.454996283265;ZNF148:-0.465552456924;IRF1,2:-0.467708124161;KLF4:-0.47590656397;UFEwm:-0.484715345029;FOX{D1,D2}:-0.522356956836;SPIB:-0.529030118118;NFIL3:-0.529878177035;PPARG:-0.531014924529;MAFB:-0.535299458695;NFKB1_REL_RELA:-0.538148270524;NKX3-2:-0.538761711655;TFCP2:-0.542211894152;SRF:-0.579209151632;SNAI1..3:-0.579754618306;SPI1:-0.622813114415;ATF2:-0.637379662022;ZEB1:-0.673682489895;HAND1,2:-0.675086503799;LMO2:-0.676319754395;SPZ1:-0.680037809295;POU2F1..3:-0.689253809596;HBP1_HMGB_SSRP1_UBTF:-0.706801088756;TAL1_TCF{3,4,12}:-0.71749602553;ETS1,2:-0.720976567806;MYOD1:-0.750290398678;CEBPA,B_DDIT3:-0.758654223828;HOX{A6,A7,B6,B7}:-0.760129837711;MTF1:-0.765491223085;GATA4:-0.768748416423;TFAP2{A,C}:-0.770339822235;ALX1:-0.797282047652;HMX1:-0.812575201483;NANOG{mouse}:-0.863728046227;NFATC1..3:-0.96393133644;STAT2,4,6:-0.969590526198;RXRA_VDR{dimer}:-1.08301928377;TLX2:-1.10367273623;HMGA1,2:-1.11380430917;HSF1,2:-1.15222904573;EP300:-1.19893519348;TBP:-1.27245278536;FOXO1,3,4:-1.37577963964
|top_motifs=PDX1:3.34856306467;TFDP1:2.00479404236;PITX1..3:1.824789371;VSX1,2:1.82285913951;E2F1..5:1.72389785631;HOX{A4,D4}:1.716375558;NFY{A,B,C}:1.67571996921;PRRX1,2:1.62248633576;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58047538917;NRF1:1.56915253589;POU1F1:1.50436344848;NKX2-3_NKX2-5:1.49272384955;ZNF143:1.25700381361;FOXA2:1.16285553122;NKX3-1:1.14511895242;GFI1:1.12885732654;YY1:1.09517099654;EN1,2:1.07061535412;FOXP1:1.0156728378;CUX2:0.948017872695;TOPORS:0.938449582549;MEF2{A,B,C,D}:0.923044675382;SOX17:0.906532900886;HIC1:0.893481246557;BREu{core}:0.855944916673;NANOG:0.850730077912;EVI1:0.778542666747;NFIX:0.745257423361;CDC5L:0.734446447709;TGIF1:0.703217365233;HIF1A:0.685538593457;NKX6-1,2:0.678865522454;STAT5{A,B}:0.674982335554;FOXQ1:0.670332603821;NKX2-1,4:0.669600406314;PBX1:0.661003773974;FOX{F1,F2,J1}:0.660523250562;LEF1_TCF7_TCF7L1,2:0.586047309503;MYB:0.571412454823;ELK1,4_GABP{A,B1}:0.534980099618;AHR_ARNT_ARNT2:0.532550309193;PAX2:0.485851803527;HES1:0.480225866788;PAX8:0.479328191766;T:0.465366494983;MZF1:0.450910874129;SOX{8,9,10}:0.437796282483;POU3F1..4:0.43420464522;SREBF1,2:0.429828820965;NFE2L2:0.427215900089;PAX4:0.420114355837;LHX3,4:0.416891272161;ATF4:0.403428585431;SP1:0.403052217796;PAX1,9:0.392490883767;PAX6:0.391211082541;ZNF384:0.372429610305;ZFP161:0.361242305883;ONECUT1,2:0.350796897378;TEAD1:0.285986353564;ATF6:0.28140347985;PAX3,7:0.262952781293;RUNX1..3:0.257816152633;FOX{I1,J2}:0.253274484518;RBPJ:0.234289813922;ZNF423:0.227612989714;FOXD3:0.225584278883;JUN:0.217894192633;MYBL2:0.216530159613;RORA:0.212874688947;DBP:0.202811649965;STAT1,3:0.199142069362;CDX1,2,4:0.19203615022;ZBTB16:0.185904049265;IKZF2:0.149509749605;RREB1:0.141869484314;TFAP2B:0.140333037193;GTF2I:0.140310622128;ATF5_CREB3:0.130102283415;OCT4_SOX2{dimer}:0.125901555075;FOXM1:0.118738886951;NR3C1:0.111556556927;NR1H4:0.0928335710051;HOX{A5,B5}:0.0783543677506;XCPE1{core}:0.0738398069923;POU6F1:0.0462695035528;IKZF1:0.0417631018968;ADNP_IRX_SIX_ZHX:0.0414091331149;TEF:0.0387390161162;EGR1..3:0.032068342969;HOXA9_MEIS1:0.0238284633509;RFX1:0.00943879657165;TBX4,5:-0.000137778184734;CREB1:-0.000451496978721;XBP1:-0.00134397830103;bHLH_family:-0.0139489673546;AIRE:-0.0224114650458;FOXN1:-0.0287028652026;AR:-0.043790796759;HNF1A:-0.0465188614363;RXR{A,B,G}:-0.0611319043853;PATZ1:-0.0720533671655;NFE2:-0.0733327636794;SOX2:-0.0758739656992;NR6A1:-0.0962340579678;ARID5B:-0.110301356634;MYFfamily:-0.116310123681;ESR1:-0.125727331342;ZBTB6:-0.127697781047;NR5A1,2:-0.130756664964;POU5F1:-0.142366460344;MED-1{core}:-0.159446573664;FOSL2:-0.171297911915;MAZ:-0.183419516947;ESRRA:-0.189382400097;ELF1,2,4:-0.190117088793;NHLH1,2:-0.195460615543;ZIC1..3:-0.195906006843;BACH2:-0.209323939154;IRF7:-0.211160920955;PAX5:-0.213658754462;GZF1:-0.216903708285;MTE{core}:-0.217533901855;GATA6:-0.221592995602;CRX:-0.242117461352;PRDM1:-0.247918160764;FOS_FOS{B,L1}_JUN{B,D}:-0.257539168813;RFX2..5_RFXANK_RFXAP:-0.283624140397;FOXP3:-0.284886985002;FOXL1:-0.297984460668;TFAP4:-0.299895327421;GCM1,2:-0.300716633111;DMAP1_NCOR{1,2}_SMARC:-0.304620783907;HLF:-0.308421155361;ZNF238:-0.308811759511;GTF2A1,2:-0.315443915464;EBF1:-0.330110419471;HNF4A_NR2F1,2:-0.330398195349;NKX2-2,8:-0.340440423202;GFI1B:-0.346787471318;REST:-0.36313308099;SOX5:-0.371877598641;NFE2L1:-0.382116561605;SMAD1..7,9:-0.382601114897;TP53:-0.387131061981;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.388307807188;TLX1..3_NFIC{dimer}:-0.391071528956;ALX4:-0.422732335365;GLI1..3:-0.443035429652;BPTF:-0.454996283265;ZNF148:-0.465552456924;IRF1,2:-0.467708124161;KLF4:-0.47590656397;UFEwm:-0.484715345029;FOX{D1,D2}:-0.522356956836;SPIB:-0.529030118118;NFIL3:-0.529878177035;PPARG:-0.531014924529;MAFB:-0.535299458695;NFKB1_REL_RELA:-0.538148270524;NKX3-2:-0.538761711655;TFCP2:-0.542211894152;SRF:-0.579209151632;SNAI1..3:-0.579754618306;SPI1:-0.622813114415;ATF2:-0.637379662022;ZEB1:-0.673682489895;HAND1,2:-0.675086503799;LMO2:-0.676319754395;SPZ1:-0.680037809295;POU2F1..3:-0.689253809596;HBP1_HMGB_SSRP1_UBTF:-0.706801088756;TAL1_TCF{3,4,12}:-0.71749602553;ETS1,2:-0.720976567806;MYOD1:-0.750290398678;CEBPA,B_DDIT3:-0.758654223828;HOX{A6,A7,B6,B7}:-0.760129837711;MTF1:-0.765491223085;GATA4:-0.768748416423;TFAP2{A,C}:-0.770339822235;ALX1:-0.797282047652;HMX1:-0.812575201483;NANOG{mouse}:-0.863728046227;NFATC1..3:-0.96393133644;STAT2,4,6:-0.969590526198;RXRA_VDR{dimer}:-1.08301928377;TLX2:-1.10367273623;HMGA1,2:-1.11380430917;HSF1,2:-1.15222904573;EP300:-1.19893519348;TBP:-1.27245278536;FOXO1,3,4:-1.37577963964
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12858-137D5;search_select_hide=table117:FF:12858-137D5
}}
}}

Latest revision as of 18:46, 4 June 2020

Name:Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification
Species:Human (Homo sapiens)
Library ID:CNhs12952
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexfemale
ageNA
cell typeosteoblast
cell lineSaos-2
companyNA
collaborationKim Summers (Roslin Institute)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005731
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12952 CAGE DRX008602 DRR009474
Accession ID Hg19

Library idBAMCTSS
CNhs12952 DRZ000899 DRZ002284
Accession ID Hg38

Library idBAMCTSS
CNhs12952 DRZ012249 DRZ013634
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005731
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10065.GTTTCG sRNA-Seq DRX037314 DRR041680
Accession ID Hg19

Library idBAMCTSS
SRhi10065.GTTTCG DRZ007322


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.048
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.631
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0344
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0344
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.018
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.115
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0176
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.044
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0839
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340.0961
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.134
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.362
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0663
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0228
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.569
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0344
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0663
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80.74
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12952

Jaspar motifP-value
MA0002.20.88
MA0003.10.227
MA0004.10.53
MA0006.10.383
MA0007.10.453
MA0009.10.813
MA0014.10.725
MA0017.10.00253
MA0018.20.0101
MA0019.10.718
MA0024.11.50387e-7
MA0025.10.685
MA0027.10.497
MA0028.10.229
MA0029.10.763
MA0030.10.829
MA0031.10.692
MA0035.20.148
MA0038.15.39959e-4
MA0039.20.925
MA0040.10.146
MA0041.10.196
MA0042.10.484
MA0043.10.377
MA0046.10.74
MA0047.20.29
MA0048.10.216
MA0050.10.0466
MA0051.10.423
MA0052.12.65962e-4
MA0055.10.124
MA0057.10.409
MA0058.10.415
MA0059.10.925
MA0060.16.05018e-13
MA0061.10.0188
MA0062.20.284
MA0065.20.00322
MA0066.10.25
MA0067.10.356
MA0068.10.421
MA0069.10.697
MA0070.10.0276
MA0071.10.48
MA0072.10.318
MA0073.10.398
MA0074.10.204
MA0076.10.128
MA0077.10.27
MA0078.10.835
MA0079.20.817
MA0080.22.87398e-9
MA0081.10.0634
MA0083.10.179
MA0084.10.197
MA0087.10.377
MA0088.10.354
MA0090.10.639
MA0091.10.0515
MA0092.10.195
MA0093.10.391
MA0099.22.80924e-4
MA0100.10.239
MA0101.10.0402
MA0102.20.0356
MA0103.10.0239
MA0104.20.352
MA0105.10.00653
MA0106.10.187
MA0107.10.0102
MA0108.20.0632
MA0111.10.841
MA0112.20.00107
MA0113.10.621
MA0114.10.0996
MA0115.10.202
MA0116.10.0176
MA0117.10.461
MA0119.10.145
MA0122.10.632
MA0124.10.624
MA0125.10.0181
MA0131.10.252
MA0135.10.0903
MA0136.11.22422e-7
MA0137.20.144
MA0138.20.0303
MA0139.10.25
MA0140.10.319
MA0141.10.139
MA0142.10.118
MA0143.10.965
MA0144.10.0545
MA0145.10.0971
MA0146.10.0955
MA0147.10.409
MA0148.10.0891
MA0149.10.553
MA0150.10.252
MA0152.10.11
MA0153.10.296
MA0154.10.023
MA0155.10.2
MA0156.10.0212
MA0157.10.15
MA0159.10.0135
MA0160.10.2
MA0162.10.147
MA0163.15.20067e-4
MA0164.10.979
MA0258.10.0481
MA0259.10.29



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12952

Novel motifP-value
10.398
100.888
1000.403
1010.858
1020.539
1030.0209
1040.699
1050.666
1061.99431e-4
1070.0311
1080.607
1090.171
110.112
1100.407
1110.353
1120.023
1130.462
1140.027
1150.135
1160.814
1170.674
1180.427
1190.0757
120.728
1200.21
1210.388
1220.621
1230.975
1240.413
1250.117
1260.254
1270.644
1280.00678
1290.198
130.607
1300.0516
1310.268
1320.311
1330.692
1340.922
1350.108
1360.556
1370.23
1380.663
1390.00354
140.463
1400.235
1410.452
1420.871
1430.0189
1440.514
1450.128
1460.754
1470.838
1480.0655
1490.0935
150.519
1500.545
1510.207
1520.0203
1530.181
1540.614
1550.601
1560.518
1570.463
1580.759
1590.572
160.195
1600.339
1610.941
1620.835
1630.865
1640.664
1650.683
1660.696
1670.0908
1680.151
1690.0335
170.12
180.0704
190.141
20.232
200.287
210.793
220.189
230.0131
240.77
250.935
260.527
270.0227
280.903
290.547
30.104
300.426
310.491
320.0689
330.627
340.334
350.238
360.689
370.136
380.32
390.105
40.432
400.489
410.144
420.326
430.158
440.0168
450.13
460.137
470.355
480.527
490.253
50.388
500.411
510.517
520.148
530.843
540.301
550.078
560.456
570.839
580.185
590.0785
60.492
600.0322
610.987
620.0876
630.161
640.495
650.0233
660.145
670.653
680.602
690.686
70.774
700.00708
710.29
720.0684
730.0511
740.299
750.544
760.698
770.107
780.666
790.00291
80.311
800.197
810.431
820.0257
830.775
840.842
850.00148
860.364
870.699
880.376
890.00809
90.174
900.363
910.402
920.127
930.828
940.0333
950.343
960.414
970.973
980.237
990.524



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12952


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0002204 (musculoskeletal system)
0001434 (skeletal system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000332 (calcification induced with ascorbate and BPG sample)
0100971 (SAOS-2 cell sample)
0100385 (bone cancer cell line sample)
0100407 (osteosarcoma cell line sample)
0000593 (human Saos2 osteosarcoma cell line 0min after induction of calcification with ascorbate and BPG sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)

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