FF:10570-108B3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00004734 | ||
|accession_numbers=CAGE;DRX007916;DRR008788;DRZ000213;DRZ001598 | |accession_numbers=CAGE;DRX007916;DRR008788;DRZ000213;DRZ001598;DRZ011563;DRZ012948 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000 | |ancestors_in_cell_lineage_facet=CL:0000000 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:46299539..46299620,+!p2@CREB3L1!1.61!66.55!CREB3L1;;chr11:46299199..46299233,+!p1@CREB3L1!1.47!140.87!CREB3L1;;chr7:27224842..27224872,-!p1@HOXA11!1.46!27.66!HOXA11;;chr11:65686802..65686818,+!p6@DRAP1!1.45!46.67!DRAP1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.93!ZBED1;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.06!HAND2;;chr7:27224795..27224840,-!p2@HOXA11!1.34!20.74!HOXA11;;chr2:19558373..19558392,-!p1@OSR1!1.33!54.45!OSR1;;chr16:86544113..86544145,+!p1@FOXF1!1.33!25.06!FOXF1;;chr2:176969228..176969260,+!p1@HOXD11!1.30!19.01!HOXD11;;chr3:141150883..141150961,+!p6@ZBTB38!1.24!16.42!ZBTB38;;chr11:65687362..65687436,+!p3@DRAP1!1.23!72.59!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!1.21!83.83!CREB3;;chr1:151032860..151032918,+!p1@MLLT11!1.15!152.97!MLLT11;;chr11:32457075..32457095,-!p1@WT1!1.14!12.96!WT1;;chr4:174450089..174450153,-!p2@HAND2!1.12!12.10!HAND2;;chr6:10412600..10412637,-!p1@TFAP2A!1.07!18.15!TFAP2A;;chr3:25470156..25470227,+!p2@RARB!1.06!10.37!RARB;;chr10:119303078..119303169,+!p2@EMX2!1.06!10.37!EMX2;;chr11:65687222..65687240,+!p7@DRAP1!1.02!12.10!DRAP1;;chr19:13134772..13134822,+!p2@NFIX!1.01!13.83!NFIX;;chr18:19749541..19749557,+!p1@GATA6!1.00!28.52!GATA6;;chr15:96876966..96877017,+!p12@NR2F2!1.00!12.96!NR2F2;;chr1:151032922..151032951,+!p2@MLLT11!0.96!13.83!MLLT11;;chr2:176969179..176969226,+!p2@HOXD11!0.94!7.78!HOXD11;;chr3:141151009..141151033,+!p10@ZBTB38!0.94!7.78!ZBTB38;;chr11:65686732..65686756,+!p2@DRAP1!0.93!32.84!DRAP1;;chr11:61520075..61520136,+!p1@C11orf9!0.93!16.42!C11orf9;;chr11:65687243..65687276,+!p8@DRAP1!0.93!10.37!DRAP1;;chr11:8102846..8102892,+!p1@TUB!0.92!10.37!TUB;;chr9:35732514..35732530,+!p5@CREB3!0.91!10.37!CREB3;;chr15:96869255..96869291,+!p6@NR2F2!0.90!12.96!NR2F2;;chr6:10415276..10415341,-!p2@TFAP2A!0.90!8.64!TFAP2A;;chr3:138665937..138665968,-!p1@FOXL2!0.90!6.91!FOXL2;;chr3:69811899..69811913,+!p11@MITF!0.90!6.91!MITF;;chr11:46299443..46299459,+!p4@CREB3L1!0.90!6.91!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!0.88!31.11!NR2F1;;chr15:42749722..42749739,-!p2@ZFP106!0.88!12.10!ZFP106;;chr5:72743793..72743855,-!p4@FOXD1!0.88!7.78!FOXD1;;chr5:92919375..92919438,+!p6@NR2F1!0.87!6.91!NR2F1;;chr1:151032782..151032801,+!p4@MLLT11!0.86!12.96!MLLT11;;chr12:124873357..124873401,-!p1@NCOR2!0.85!75.19!NCOR2;;chr3:128206762..128206781,-!p2@GATA2!0.85!40.62!GATA2;;chr3:69811882..69811898,+!p6@MITF!0.85!6.05!MITF;;chr4:174451350..174451363,-!p3@HAND2!0.85!6.05!HAND2;;chr6:28321909..28321965,-!p3@ZNF323!0.85!6.05!ZNF323;;chr2:239756671..239756732,+!p1@TWIST2!0.84!19.88!TWIST2;;chr15:96869222..96869251,+!p18@NR2F2!0.83!6.91!NR2F2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.82!427.79!TAX1BP3;;chr18:19749517..19749531,+!p3@GATA6!0.82!10.37!GATA6;;chr9:2158443..2158481,+!p2@SMARCA2!0.81!16.42!SMARCA2;;chr1:151032739..151032748,+!p6@MLLT11!0.81!6.91!MLLT11;;chr17:46126136..46126152,+!p1@NFE2L1!0.79!291.24!NFE2L1;;chr12:124873852..124873881,-!p3@NCOR2!0.79!33.70!NCOR2;;chr6:10412392..10412409,-!p4@TFAP2A!0.79!6.05!TFAP2A;;chr19:47523058..47523114,+!p1@NPAS1!0.79!5.19!NPAS1;;chr11:46333979..46333991,+!p7@CREB3L1!0.79!5.19!CREB3L1;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.19!ZNF668;;chr16:69419590..69419601,-!p5@TERF2!0.79!5.19!TERF2;;chr10:77161133..77161176,-!p3@ZNF503!0.77!11.23!ZNF503;;chr15:96869114..96869160,+!p11@NR2F2!0.77!6.91!NR2F2;;chr5:72744594..72744609,-!p1@FOXD1!0.75!23.33!FOXD1;;chr19:13134457..13134462,+!p5@NFIX!0.75!8.64!NFIX;;chr20:55204351..55204377,+!p1@TFAP2C!0.75!6.05!TFAP2C;;chr11:65687158..65687216,+!p4@DRAP1!0.74!28.52!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!0.73!148.65!HMGA1;;chr17:59477233..59477263,+!p1@TBX2!0.73!14.69!TBX2;;chr15:96869206..96869220,+!p21@NR2F2!0.73!4.32!NR2F2;;chr11:32457103..32457123,-!p3@WT1!0.73!4.32!WT1;;chr11:46333934..46333963,+!p5@CREB3L1!0.73!4.32!CREB3L1;;chr3:69811858..69811881,+!p5@MITF!0.73!4.32!MITF;;chr6:10412576..10412599,-!p5@TFAP2A!0.73!4.32!TFAP2A;;chr6:28321971..28321995,-!p1@ZNF323!0.73!4.32!ZNF323;;chr7:27192185..27192209,-!p1@HOXA3!0.73!4.32!HOXA3;;chr11:65686952..65686975,+!p5@DRAP1!0.70!25.06!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.70!17.28!FOSL1;;chr5:72744445..72744466,-!p2@FOXD1!0.69!6.91!FOXD1;;chr3:178789993..178790049,-!p5@ZMAT3!0.69!6.05!ZMAT3;;chr3:52001448..52001478,-!p2@PCBP4!0.68!60.50!PCBP4;;chr15:37390850..37390909,-!p3@MEIS2!0.67!7.78!MEIS2;;chr15:96874216..96874236,+!p13@NR2F2!0.67!6.05!NR2F2;;chr9:35732561..35732587,+!p3@CREB3!0.66!17.28!CREB3;;chr20:50721803..50721857,-!p2@ZFP64!0.66!6.05!ZFP64;;chr11:65686776..65686787,+!p9@DRAP1!0.66!4.32!DRAP1;;chr9:35732592..35732640,+!p1@CREB3!0.65!53.58!CREB3;;chr15:37392576..37392589,-!p12@MEIS2!0.65!4.32!MEIS2;;chr5:92919100..92919135,+!p3@NR2F1!0.65!4.32!NR2F1;;chr5:139492456..139492489,+!p7@PURA!0.65!3.46!PURA;;chr5:92918768..92918783,+!p8@NR2F1!0.65!3.46!NR2F1;;chr2:176994408..176994492,+!p1@HOXD8!0.65!3.46!HOXD8;;chr3:138665969..138665993,-!p2@FOXL2!0.65!3.46!FOXL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.65!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| |expression_enrichment_score=chr11:46299539..46299620,+!p2@CREB3L1!1.61!66.55!CREB3L1;;chr11:46299199..46299233,+!p1@CREB3L1!1.47!140.87!CREB3L1;;chr7:27224842..27224872,-!p1@HOXA11!1.46!27.66!HOXA11;;chr11:65686802..65686818,+!p6@DRAP1!1.45!46.67!DRAP1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.93!ZBED1;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.06!HAND2;;chr7:27224795..27224840,-!p2@HOXA11!1.34!20.74!HOXA11;;chr2:19558373..19558392,-!p1@OSR1!1.33!54.45!OSR1;;chr16:86544113..86544145,+!p1@FOXF1!1.33!25.06!FOXF1;;chr2:176969228..176969260,+!p1@HOXD11!1.30!19.01!HOXD11;;chr3:141150883..141150961,+!p6@ZBTB38!1.24!16.42!ZBTB38;;chr11:65687362..65687436,+!p3@DRAP1!1.23!72.59!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!1.21!83.83!CREB3;;chr1:151032860..151032918,+!p1@MLLT11!1.15!152.97!MLLT11;;chr11:32457075..32457095,-!p1@WT1!1.14!12.96!WT1;;chr4:174450089..174450153,-!p2@HAND2!1.12!12.10!HAND2;;chr6:10412600..10412637,-!p1@TFAP2A!1.07!18.15!TFAP2A;;chr3:25470156..25470227,+!p2@RARB!1.06!10.37!RARB;;chr10:119303078..119303169,+!p2@EMX2!1.06!10.37!EMX2;;chr11:65687222..65687240,+!p7@DRAP1!1.02!12.10!DRAP1;;chr19:13134772..13134822,+!p2@NFIX!1.01!13.83!NFIX;;chr18:19749541..19749557,+!p1@GATA6!1.00!28.52!GATA6;;chr15:96876966..96877017,+!p12@NR2F2!1.00!12.96!NR2F2;;chr1:151032922..151032951,+!p2@MLLT11!0.96!13.83!MLLT11;;chr2:176969179..176969226,+!p2@HOXD11!0.94!7.78!HOXD11;;chr3:141151009..141151033,+!p10@ZBTB38!0.94!7.78!ZBTB38;;chr11:65686732..65686756,+!p2@DRAP1!0.93!32.84!DRAP1;;chr11:61520075..61520136,+!p1@C11orf9!0.93!16.42!C11orf9;;chr11:65687243..65687276,+!p8@DRAP1!0.93!10.37!DRAP1;;chr11:8102846..8102892,+!p1@TUB!0.92!10.37!TUB;;chr9:35732514..35732530,+!p5@CREB3!0.91!10.37!CREB3;;chr15:96869255..96869291,+!p6@NR2F2!0.90!12.96!NR2F2;;chr6:10415276..10415341,-!p2@TFAP2A!0.90!8.64!TFAP2A;;chr3:138665937..138665968,-!p1@FOXL2!0.90!6.91!FOXL2;;chr3:69811899..69811913,+!p11@MITF!0.90!6.91!MITF;;chr11:46299443..46299459,+!p4@CREB3L1!0.90!6.91!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!0.88!31.11!NR2F1;;chr15:42749722..42749739,-!p2@ZFP106!0.88!12.10!ZFP106;;chr5:72743793..72743855,-!p4@FOXD1!0.88!7.78!FOXD1;;chr5:92919375..92919438,+!p6@NR2F1!0.87!6.91!NR2F1;;chr1:151032782..151032801,+!p4@MLLT11!0.86!12.96!MLLT11;;chr12:124873357..124873401,-!p1@NCOR2!0.85!75.19!NCOR2;;chr3:128206762..128206781,-!p2@GATA2!0.85!40.62!GATA2;;chr3:69811882..69811898,+!p6@MITF!0.85!6.05!MITF;;chr4:174451350..174451363,-!p3@HAND2!0.85!6.05!HAND2;;chr6:28321909..28321965,-!p3@ZNF323!0.85!6.05!ZNF323;;chr2:239756671..239756732,+!p1@TWIST2!0.84!19.88!TWIST2;;chr15:96869222..96869251,+!p18@NR2F2!0.83!6.91!NR2F2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.82!427.79!TAX1BP3;;chr18:19749517..19749531,+!p3@GATA6!0.82!10.37!GATA6;;chr9:2158443..2158481,+!p2@SMARCA2!0.81!16.42!SMARCA2;;chr1:151032739..151032748,+!p6@MLLT11!0.81!6.91!MLLT11;;chr17:46126136..46126152,+!p1@NFE2L1!0.79!291.24!NFE2L1;;chr12:124873852..124873881,-!p3@NCOR2!0.79!33.70!NCOR2;;chr6:10412392..10412409,-!p4@TFAP2A!0.79!6.05!TFAP2A;;chr19:47523058..47523114,+!p1@NPAS1!0.79!5.19!NPAS1;;chr11:46333979..46333991,+!p7@CREB3L1!0.79!5.19!CREB3L1;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.19!ZNF668;;chr16:69419590..69419601,-!p5@TERF2!0.79!5.19!TERF2;;chr10:77161133..77161176,-!p3@ZNF503!0.77!11.23!ZNF503;;chr15:96869114..96869160,+!p11@NR2F2!0.77!6.91!NR2F2;;chr5:72744594..72744609,-!p1@FOXD1!0.75!23.33!FOXD1;;chr19:13134457..13134462,+!p5@NFIX!0.75!8.64!NFIX;;chr20:55204351..55204377,+!p1@TFAP2C!0.75!6.05!TFAP2C;;chr11:65687158..65687216,+!p4@DRAP1!0.74!28.52!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!0.73!148.65!HMGA1;;chr17:59477233..59477263,+!p1@TBX2!0.73!14.69!TBX2;;chr15:96869206..96869220,+!p21@NR2F2!0.73!4.32!NR2F2;;chr11:32457103..32457123,-!p3@WT1!0.73!4.32!WT1;;chr11:46333934..46333963,+!p5@CREB3L1!0.73!4.32!CREB3L1;;chr3:69811858..69811881,+!p5@MITF!0.73!4.32!MITF;;chr6:10412576..10412599,-!p5@TFAP2A!0.73!4.32!TFAP2A;;chr6:28321971..28321995,-!p1@ZNF323!0.73!4.32!ZNF323;;chr7:27192185..27192209,-!p1@HOXA3!0.73!4.32!HOXA3;;chr11:65686952..65686975,+!p5@DRAP1!0.70!25.06!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.70!17.28!FOSL1;;chr5:72744445..72744466,-!p2@FOXD1!0.69!6.91!FOXD1;;chr3:178789993..178790049,-!p5@ZMAT3!0.69!6.05!ZMAT3;;chr3:52001448..52001478,-!p2@PCBP4!0.68!60.50!PCBP4;;chr15:37390850..37390909,-!p3@MEIS2!0.67!7.78!MEIS2;;chr15:96874216..96874236,+!p13@NR2F2!0.67!6.05!NR2F2;;chr9:35732561..35732587,+!p3@CREB3!0.66!17.28!CREB3;;chr20:50721803..50721857,-!p2@ZFP64!0.66!6.05!ZFP64;;chr11:65686776..65686787,+!p9@DRAP1!0.66!4.32!DRAP1;;chr9:35732592..35732640,+!p1@CREB3!0.65!53.58!CREB3;;chr15:37392576..37392589,-!p12@MEIS2!0.65!4.32!MEIS2;;chr5:92919100..92919135,+!p3@NR2F1!0.65!4.32!NR2F1;;chr5:139492456..139492489,+!p7@PURA!0.65!3.46!PURA;;chr5:92918768..92918783,+!p8@NR2F1!0.65!3.46!NR2F1;;chr2:176994408..176994492,+!p1@HOXD8!0.65!3.46!HOXD8;;chr3:138665969..138665993,-!p2@FOXL2!0.65!3.46!FOXL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.65!3.46!ZBTB38;;chr15:67418177..67418204,+!p9@SMAD3!0.65!3.46!SMAD3;;chr15:67430381..67430396,+!p21@SMAD3!0.65!3.46!SMAD3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.65!3.46!SEBOX;;chr19:13135582..13135600,+!p3@NFIX!0.65!3.46!NFIX;;chr11:46316699..46316719,+!p10@CREB3L1!0.65!3.46!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!0.65!3.46!HMGA2;;chr12:8186270..8186292,+!p3@FOXJ2!0.65!3.46!FOXJ2;;chr12:80085255..80085284,-!p9@PAWR!0.64!5.19!PAWR;;chrX:66763856..66763896,+!p1@AR!0.64!5.19!AR;;chr17:79881332..79881348,-!p3@MAFG!0.64!5.19!MAFG;;chr3:141121847..141121868,+!p5@ZBTB38!0.62!5.19!ZBTB38;;chr15:37391588..37391604,-!p11@MEIS2!0.62!4.32!MEIS2;;chr6:34205372..34205412,+!p5@HMGA1!0.60!18.15!HMGA1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.60!14.69!LRRFIP2;;chr18:74072572..74072588,-!p2@ZNF516!0.60!5.19!ZNF516;;chr11:46299186..46299195,+!p3@CREB3L1!0.60!3.46!CREB3L1;;chr3:178789522..178789564,-!p2@ZMAT3!0.58!25.06!ZMAT3;;chr17:47492252..47492265,-!p2@PHB!0.58!13.83!PHB;;chr3:25469724..25469773,+!p1@RARB!0.58!4.32!RARB;;chr13:45151259..45151326,-!p2@TSC22D1!0.57!19.88!TSC22D1;;chr12:26277956..26277980,-!p1@BHLHE41!0.56!11.23!BHLHE41;;chr5:92918894..92918912,+!p2@NR2F1!0.56!10.37!NR2F1;;chr7:1577899..1577943,+!p3@MAFK!0.56!2.59!MAFK;;chr7:27213893..27213954,-!p1@HOXA10!0.56!2.59!HOXA10;;chr7:27239740..27239759,-!p2@HOXA13!0.56!2.59!HOXA13;;chr2:176969124..176969155,+!p5@HOXD11!0.56!2.59!HOXD11;;chr2:176973498..176973524,+!p1@HOXD10!0.56!2.59!HOXD10;;chr2:85981008..85981025,+!p7@ATOH8!0.56!2.59!ATOH8;;chr2:85981027..85981047,+!p8@ATOH8!0.56!2.59!ATOH8;;chr2:85981073..85981091,+!p5@ATOH8!0.56!2.59!ATOH8;;chr3:128207349..128207386,-!p3@GATA2!0.56!2.59!GATA2;;chr3:178789220..178789255,-!p6@ZMAT3!0.56!2.59!ZMAT3;;chr15:96869165..96869183,+!p20@NR2F2!0.56!2.59!NR2F2;;chr17:46128217..46128243,+!p11@NFE2L1!0.56!2.59!NFE2L1;;chr17:59477403..59477414,+!p4@TBX2!0.56!2.59!TBX2;;chr19:2867325..2867348,+!p1@ZNF556!0.56!2.59!ZNF556;;chr19:3381943..3381961,+!p8@NFIC!0.56!2.59!NFIC;;chr1:151032957..151032968,+!p7@MLLT11!0.56!2.59!MLLT11;;chr10:119302268..119302282,+!p4@EMX2!0.56!2.59!EMX2;;chr10:119302508..119302559,+!p5@EMX2!0.56!2.59!EMX2;;chr11:46333883..46333900,+!p8@CREB3L1!0.56!2.59!CREB3L1;;chr12:26277798..26277809,-!p5@BHLHE41!0.56!2.59!BHLHE41;;chr12:66218923..66218934,+!p14@HMGA2!0.56!2.59!HMGA2;;chr13:45150455..45150472,-!p8@TSC22D1!0.56!2.59!TSC22D1;;chrX:24167086..24167111,+!p4@ZFX!0.56!2.59!ZFX;;chr19:44669221..44669274,+!p1@ZNF226,p1@ZNF234!0.55!33.70!ZNF226;;chr8:49833948..49833973,-!p2@SNAI2!0.55!19.88!SNAI2;;chr19:53636125..53636178,-!p1@ZNF415!0.55!8.64!ZNF415;;chr12:104531823..104531849,-!p5@NFYB!0.55!6.05!NFYB;;chr1:158985493..158985535,+!p4@IFI16!0.55!4.32!IFI16;;chr2:148779187..148779222,+!p5@MBD5!0.55!3.46!MBD5;;chr15:37392724..37392757,-!p1@MEIS2!0.54!13.83!MEIS2;;chr7:100076723..100076737,-!p3@TSC22D4!0.54!4.32!TSC22D4;;chr8:49833978..49833996,-!p1@SNAI2!0.53!63.09!SNAI2;;chr3:114343768..114343822,-!p1@ZBTB20!0.53!12.96!ZBTB20;;chr15:96874244..96874259,+!p5@NR2F2!0.53!6.91!NR2F2;;chr5:139487608..139487663,+!p3@PURA!0.53!6.05!PURA;;chr12:26277817..26277863,-!p2@BHLHE41!0.53!3.46!BHLHE41;;chr20:48807456..48807475,+!p3@CEBPB!0.52!5.19!CEBPB;;chr19:50431999..50432026,+!p4@ATF5!0.52!3.46!ATF5;;chr6:32095523..32095564,-!p2@ATF6B!0.52!3.46!ATF6B;;chr15:37392703..37392717,-!p8@MEIS2!0.51!3.46!MEIS2;;chr16:3333546..3333558,+!p5@ZNF263!0.51!2.59!ZNF263;;chr14:24837368..24837401,+!p1@NFATC4!0.50!6.05!NFATC4;;chr12:26277929..26277955,-!p3@BHLHE41!0.50!3.46!BHLHE41;;chr18:19749386..19749404,+!p2@GATA6!0.50!3.46!GATA6;;chr16:8962202..8962222,-!p3@CARHSP1!0.49!4.32!CARHSP1;;chr3:52001396..52001425,-!p4@PCBP4!0.49!4.32!PCBP4;;chr11:65667846..65667868,-!p1@FOSL1!0.48!72.59!FOSL1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.48!30.25!TAX1BP3;;chr6:21597765..21597779,+!p2@SOX4!0.48!21.61!SOX4;;chr10:77161533..77161546,-!p2@ZNF503!0.48!10.37!ZNF503;;chr17:7492684..7492778,-!p2@SOX15!0.48!5.19!SOX15;;chr1:23696308..23696339,-!p2@ZNF436!0.48!5.19!ZNF436;;chr5:132299572..132299623,-!p6@AFF4!0.48!4.32!AFF4;;chr5:92919068..92919082,+!p5@NR2F1!0.48!2.59!NR2F1;;chr12:104532062..104532071,-!p6@NFYB!0.48!2.59!NFYB;;chr22:38598086..38598105,+!p1@MAFF!0.47!28.52!MAFF;;chr17:38256822..38256851,-!p1@NR1D1!0.47!20.74!NR1D1;;chrX:48900782..48900793,-!p3@TFE3!0.47!4.32!TFE3;;chr5:134369905..134369972,-!p1@PITX1!0.47!3.46!PITX1;;chr8:99956662..99956684,+!p1@OSR2!0.47!3.46!OSR2;;chr5:72744562..72744573,-!p3@FOXD1!0.47!2.59!FOXD1;;chr6:43140095..43140145,+!p5@SRF!0.47!2.59!SRF;;chr15:37390374..37390422,-!p9@MEIS2!0.47!2.59!MEIS2;;chr19:37998036..37998098,+!p2@ZNF793!0.47!2.59!ZNF793;;chr2:70314849..70314860,+!p3@PCBP1!0.46!38.89!PCBP1;;chr6:20403916..20403965,+!p3@E2F3!0.46!11.23!E2F3;;chr11:62369383..62369399,-!p6@MTA2!0.46!5.19!MTA2;;chr1:26496459..26496470,+!p2@ZNF593!0.46!4.32!ZNF593;;chr12:80085061..80085119,-!p6@PAWR!0.46!3.46!PAWR;;chr6:21597370..21597408,+!p5@SOX4!0.46!3.46!SOX4;;chr3:178789648..178789661,-!p4@ZMAT3!0.46!3.46!ZMAT3;;chr17:2049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3!0.18!0.86!SMAD3;;chr15:67418047..67418093,+!p4@SMAD3!0.18!0.86!SMAD3;;chr16:30583204..30583233,-!p5@ZNF688!0.18!0.86!ZNF688;;chr16:69600209..69600234,+!p4@NFAT5!0.18!0.86!NFAT5;;chr17:61919812..61919833,-!p6@SMARCD2!0.18!0.86!SMARCD2;;chr7:14029312..14029325,-!p4@ETV1!0.18!0.86!ETV1;;chr8:37963466..37963506,+!p3@ASH2L!0.18!0.86!ASH2L;;chr6:21593973..21593988,+!p1@SOX4!0.17!47.53!SOX4;;chr16:3333443..3333545,+!p1@ZNF263!0.17!15.56!ZNF263;;chr19:58011258..58011317,+!p1@ZNF773!0.17!9.51!ZNF773;;chr19:37701396..37701453,-!p1@ZNF585B!0.17!6.91!ZNF585B;;chr19:57862622..57862686,+!p1@ZNF304!0.17!6.05!ZNF304;;chr8:144766617..144766664,+!p1@ZNF707!0.17!6.05!ZNF707;;chr19:44529479..44529542,+!p1@ZNF222,p1@ZNF284!0.17!5.19!ZNF222;;chr16:73092898..73092931,-!p1@ZFHX3!0.17!4.32!ZFHX3;;chr2:66662249..66662267,+!p2@MEIS1!0.17!4.32!MEIS1;;chr10:35484804..35484902,+!p2@CREM!0.17!4.32!CREM;;chr10:51565156..51565167,+!p5@NCOA4!0.17!3.46!NCOA4;;chr19:58220517..58220583,-!p1@ZNF154!0.17!3.46!ZNF154;;chr5:321810..321877,+!p1@AHRR!0.17!3.46!AHRR;;chr19:31840313..31840380,-!p1@TSHZ3!0.17!2.59!TSHZ3;;chr19:45250948..45250998,+!p3@BCL3!0.17!2.59!BCL3;;chr12:53853054..53853092,+!p6@PCBP2!0.17!1.73!PCBP2;;chr12:66218183..66218209,+!p4@HMGA2!0.17!1.73!HMGA2;;chr18:3449527..3449582,+!p6@TGIF1!0.17!1.73!TGIF1;;chr18:51750414..51750449,-!p5@MBD2!0.17!1.73!MBD2;;chr14:89029323..89029329,+!p4@ZC3H14!0.17!0.86!ZC3H14;;chr18:3450334..3450341,+!p15@TGIF1!0.17!0.86!TGIF1;;chr19:38183208..38183225,-!p1@ZNF781!0.17!0.86!ZNF781;;chr1:41157641..41157665,+!p7@NFYC!0.17!0.86!NFYC;;chr1:45805907..45805918,+!p5@TOE1!0.17!0.86!TOE1;;chr9:117150303..117150312,-!p3@AKNA!0.17!0.86!AKNA;;chr11:62369806..62369837,-!p8@MTA2!0.17!0.86!MTA2;;chr12:125003087..125003141,-!p4@NCOR2!0.17!0.86!NCOR2;;chr12:24715376..24715432,-!p1@SOX5!0.17!0.86!SOX5;;chr12:80084137..80084165,-!p10@PAWR!0.17!0.86!PAWR;;chr22:41697484..41697496,+!p3@ZC3H7B!0.17!0.86!ZC3H7B;;chr2:176033066..176033087,-!p2@ATF2!0.17!0.86!ATF2;;chr3:129158696..129158703,-!p4@MBD4!0.17!0.86!MBD4;;chr3:44626359..44626387,+!p4@ZNF197!0.17!0.86!ZNF197;;chr7:64467057..64467078,-!p1@ZNF117!0.16!24.20!ZNF117;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.16!12.10!ZNF576;;chr18:32870148..32870223,-!p1@ZSCAN30!0.16!8.64!ZSCAN30;;chr3:150126759..150126784,+!p2@TSC22D2!0.16!5.19!TSC22D2;;chr20:3388541..3388575,-!p2@C20orf194!0.16!4.32!C20orf194;;chr17:38256877..38256900,-!p2@NR1D1!0.16!3.46!NR1D1;;chr19:20150301..20150321,-!p1@ZNF682!0.16!2.59!ZNF682;;chr1:161736125..161736136,+!p5@ATF6!0.16!2.59!ATF6;;chr17:61920116..61920131,-!p5@SMARCD2!0.16!1.73!SMARCD2;;chr19:12405606..12405629,-!p2@ZNF44!0.16!1.73!ZNF44;;chr11:615570..615721,-!p2@IRF7!0.16!1.73!IRF7;;chr12:12764947..12764986,+!p2@CREBL2!0.16!1.73!CREBL2;;chr11:6947720..6947812,+!p1@ZNF215!0.16!0.86!ZNF215;;chr12:12764917..12764931,+!p4@CREBL2!0.16!0.86!CREBL2;;chr12:72056773..72056796,+!p3@THAP2!0.16!0.86!THAP2;;chr13:46542074..46542106,-!p6@ZC3H13!0.16!0.86!ZC3H13;;chr14:105886290..105886299,+!p5@MTA1!0.16!0.86!MTA1;;chr14:35873101..35873119,-!p6@NFKBIA!0.16!0.86!NFKBIA;;chr14:69261310..69261326,-!p5@ZFP36L1!0.16!0.86!ZFP36L1;;chr2:46612334..46612349,+!p6@EPAS1!0.16!0.86!EPAS1;;chr4:87928085..87928097,+!p17@AFF1!0.16!0.86!AFF1;;chr6:151712968..151712992,-!p5@ZBTB2!0.16!0.86!ZBTB2;;chr7:149470540..149470596,-!p2@ZNF467!0.16!0.86!ZNF467;;chr7:74072288..74072299,+!p7@GTF2I!0.16!0.86!GTF2I;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.16!0.86!GLIS2;;chr18:3449330..3449344,+!p10@TGIF1!0.16!0.86!TGIF1;;chr19:12163769..12163798,-!p1@ZNF878!0.16!0.86!ZNF878;;chr19:52531585..52531596,-!p2@ZNF614!0.16!0.86!ZNF614;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.15!73.46!PCBP4;;chr6:134274354..134274371,+!p1@TBPL1!0.15!33.70!TBPL1;;chr17:79885576..79885624,-!p1@MAFG!0.15!13.83!MAFG;;chr6:32095968..32096032,-!p1@ATF6B!0.15!10.37!ATF6B;;chr3:141868293..141868355,-!p2@TFDP2!0.15!10.37!TFDP2;;chr2:178128149..178128198,-!p2@NFE2L2!0.15!6.05!NFE2L2;;chr12:48298785..48298828,-!p1@VDR!0.15!6.05!VDR;;chr1:161736072..161736093,+!p2@ATF6!0.15!5.19!ATF6;;chr17:7382856..7382889,-!p3@ZBTB4!0.15!4.32!ZBTB4;;chr19:53758058..53758088,-!p2@ZNF677!0.15!3.46!ZNF677;;chr21:36262032..36262062,-!p5@RUNX1!0.15!2.59!RUNX1;;chr13:20357110..20357121,-!p2@PSPC1!0.15!2.59!PSPC1;;chr3:5021191..5021202,+!p3@BHLHE40!0.15!2.59!BHLHE40;;chr7:42276787..42276815,-!p1@GLI3!0.15!2.59!GLI3;;chr8:23540441..23540466,-!p1@NKX3-1!0.15!1.73!NKX3-1;;chrX:77041657..77041668,-!p2@ATRX!0.15!1.73!ATRX;;chr3:114343826..114343869,-!p4@ZBTB20!0.15!1.73!ZBTB20;;chr22:21356345..21356367,-!p3@THAP7!0.15!0.86!THAP7;;chr4:87968291..87968314,+!p14@AFF1!0.15!0.86!AFF1;;chr5:178287112..178287133,+!p4@ZNF354B!0.15!0.86!ZNF354B;;chr6:136599737..136599767,-!p2@BCLAF1!0.15!0.86!BCLAF1;;chr12:133706975..133707013,-!p3@ZNF891!0.15!0.86!ZNF891;;chr13:74708269..74708291,-!p7@KLF12!0.15!0.86!KLF12;;chr19:57078386..57078407,+!p3@ZNF470!0.15!0.86!ZNF470;;chr1:40627028..40627037,+!p2@RLF!0.15!0.86!RLF;;chr20:49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| ||
Line 40: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15242A.CNhs11723.10570-108B3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15242A.CNhs11723.10570-108B3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15242A.CNhs11723.10570-108B3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15242A.CNhs11723.10570-108B3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15242A.CNhs11723.10570-108B3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10570-108B3 | |id=FF:10570-108B3 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0102694 | |is_a=EFO:0002091;;FF:0000210;;FF:0102694 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11723 | |library_id=CNhs11723 | ||
| | |library_id_phase_based=2:CNhs11723 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10570 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10570 | |||
|name=leiomyoma cell line:15242A | |name=leiomyoma cell line:15242A | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11723,LSID819,release009,COMPLETED | |profile_hcage=CNhs11723,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 89: | Line 100: | ||
|top_motifs=HSF1,2:2.13537874896;UFEwm:1.7303270437;GZF1:1.72925382988;ZBTB6:1.65354804226;NFE2L1:1.64214295529;EN1,2:1.61636135464;HOXA9_MEIS1:1.60213161544;NKX3-1:1.55917387126;KLF4:1.51446732881;NR1H4:1.5098598341;RXRA_VDR{dimer}:1.45154535197;ESR1:1.45118260336;PAX6:1.43330636545;NKX2-2,8:1.38033200035;ALX4:1.33244816191;HES1:1.30360665103;ATF6:1.29340905921;HMX1:1.2196113195;SMAD1..7,9:1.20305055536;HOX{A4,D4}:1.20181633657;POU6F1:1.15613633373;GLI1..3:1.11359550222;SRF:1.07345074951;RXR{A,B,G}:1.03625159142;HOX{A5,B5}:0.98667892565;ZNF238:0.959863762639;GCM1,2:0.957685534242;CRX:0.916804863685;IKZF1:0.916040324685;HIF1A:0.891741580424;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.885091088955;TLX1..3_NFIC{dimer}:0.875102587992;TFAP4:0.865180326074;NR3C1:0.84815225905;ESRRA:0.837247070889;TBX4,5:0.830877160127;SPZ1:0.830252388924;TFCP2:0.81313806192;TEAD1:0.801414017647;TP53:0.798228594474;XBP1:0.777887232222;ZIC1..3:0.771753668371;CDC5L:0.720871090875;HOX{A6,A7,B6,B7}:0.719554546473;ARID5B:0.718293006483;TBP:0.714440163787;GFI1B:0.691692900246;NKX3-2:0.656634222008;MAFB:0.652322184947;NFE2L2:0.61036121084;POU3F1..4:0.568128396097;PPARG:0.566401324659;NR5A1,2:0.493590518271;TAL1_TCF{3,4,12}:0.455438242398;MYBL2:0.443626874684;HMGA1,2:0.430345886901;NFATC1..3:0.417954371008;ONECUT1,2:0.403353825321;MYFfamily:0.397080988074;AIRE:0.367899275781;YY1:0.351596412906;PAX5:0.309557500779;EBF1:0.289380679173;NFIX:0.280476130304;FOSL2:0.279302862764;FOX{I1,J2}:0.253437972217;PRDM1:0.211267304728;HAND1,2:0.199427984593;AR:0.19266164985;GTF2I:0.1906451971;BACH2:0.187190686133;ELK1,4_GABP{A,B1}:0.174142966796;HLF:0.171135208257;GTF2A1,2:0.169214534474;FOS_FOS{B,L1}_JUN{B,D}:0.156347725444;PAX4:0.120264220664;bHLH_family:0.0871568853987;EVI1:0.0869341425883;MTE{core}:0.0498129191781;CDX1,2,4:0.0458376530776;HIC1:0.0357899537035;PAX3,7:0.0323050629106;NR6A1:0.0303497359759;GATA4:0.0277278741641;JUN:-0.037669232998;FOXL1:-0.0645323235196;SOX17:-0.0664034650809;HNF1A:-0.0684607746165;PAX2:-0.104649828449;NKX2-1,4:-0.10892554048;NFE2:-0.118874365146;TFAP2{A,C}:-0.121229587816;STAT5{A,B}:-0.1332813795;LMO2:-0.139373602972;FOXD3:-0.159865631353;MYOD1:-0.185694979118;LEF1_TCF7_TCF7L1,2:-0.185951271801;RFX1:-0.192542551875;SREBF1,2:-0.21337858962;MEF2{A,B,C,D}:-0.244963600402;ZNF148:-0.247478914449;REST:-0.253080407398;HNF4A_NR2F1,2:-0.254348745199;MZF1:-0.262066810241;SOX2:-0.26480876224;STAT2,4,6:-0.275326389665;TFAP2B:-0.282569081005;LHX3,4:-0.333332359598;NHLH1,2:-0.337732589004;RFX2..5_RFXANK_RFXAP:-0.355495884822;ZBTB16:-0.359727968159;SNAI1..3:-0.363494175254;MAZ:-0.37074754173;TEF:-0.389494423602;DMAP1_NCOR{1,2}_SMARC:-0.389956348588;CEBPA,B_DDIT3:-0.393731355906;NRF1:-0.40928288166;T:-0.43691538281;ALX1:-0.447201024084;FOXP3:-0.456683709037;NANOG{mouse}:-0.463951545041;ZNF384:-0.468813993352;SP1:-0.478189616314;DBP:-0.484010395852;IRF1,2:-0.48682085637;XCPE1{core}:-0.495042261139;FOXM1:-0.496394420701;NFKB1_REL_RELA:-0.520371588968;ZNF423:-0.522387029899;MTF1:-0.523683646362;ETS1,2:-0.537827429668;FOXN1:-0.546671464129;SPIB:-0.55980314733;OCT4_SOX2{dimer}:-0.560641058683;IRF7:-0.579939357617;SPI1:-0.589016486916;RUNX1..3:-0.594275130491;FOX{D1,D2}:-0.595244044207;ZEB1:-0.606335530284;SOX5:-0.610912207537;GFI1:-0.621347628888;AHR_ARNT_ARNT2:-0.627022781242;RREB1:-0.637138412619;TOPORS:-0.641546789705;PAX1,9:-0.653522631772;ADNP_IRX_SIX_ZHX:-0.693477281525;TLX2:-0.701014408572;TGIF1:-0.703692494452;PATZ1:-0.717048027647;PRRX1,2:-0.718341881697;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.745856518227;PAX8:-0.771938386816;NKX2-3_NKX2-5:-0.785986426688;EGR1..3:-0.792474318922;MED-1{core}:-0.810791268943;CREB1:-0.817776025562;PBX1:-0.828075759804;PDX1:-0.828696969761;NANOG:-0.856769245185;NFIL3:-0.857116330416;ELF1,2,4:-0.86272466833;ZNF143:-0.863674971923;ATF5_CREB3:-0.866932529691;POU1F1:-0.909446264964;GATA6:-0.925130246285;ZFP161:-0.975051717357;RORA:-0.984710440203;FOXO1,3,4:-0.992421539568;NKX6-1,2:-0.995820670705;ATF2:-1.00632575569;MYB:-1.0974729912;POU5F1:-1.14393762419;CUX2:-1.20097599899;VSX1,2:-1.26720653696;FOX{F1,F2,J1}:-1.26984288024;E2F1..5:-1.28304624368;EP300:-1.2912787268;FOXP1:-1.32760144615;IKZF2:-1.33092149183;FOXQ1:-1.3343177507;SOX{8,9,10}:-1.34047619678;HBP1_HMGB_SSRP1_UBTF:-1.34494454437;PITX1..3:-1.47144708277;RBPJ:-1.48349503961;STAT1,3:-1.57474677276;NFY{A,B,C}:-1.58726145709;POU2F1..3:-1.68789807236;FOXA2:-1.70366436377;ATF4:-1.80370792396;TFDP1:-1.81509134777;BPTF:-1.85773850953;BREu{core}:-2.17734883539 | |top_motifs=HSF1,2:2.13537874896;UFEwm:1.7303270437;GZF1:1.72925382988;ZBTB6:1.65354804226;NFE2L1:1.64214295529;EN1,2:1.61636135464;HOXA9_MEIS1:1.60213161544;NKX3-1:1.55917387126;KLF4:1.51446732881;NR1H4:1.5098598341;RXRA_VDR{dimer}:1.45154535197;ESR1:1.45118260336;PAX6:1.43330636545;NKX2-2,8:1.38033200035;ALX4:1.33244816191;HES1:1.30360665103;ATF6:1.29340905921;HMX1:1.2196113195;SMAD1..7,9:1.20305055536;HOX{A4,D4}:1.20181633657;POU6F1:1.15613633373;GLI1..3:1.11359550222;SRF:1.07345074951;RXR{A,B,G}:1.03625159142;HOX{A5,B5}:0.98667892565;ZNF238:0.959863762639;GCM1,2:0.957685534242;CRX:0.916804863685;IKZF1:0.916040324685;HIF1A:0.891741580424;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.885091088955;TLX1..3_NFIC{dimer}:0.875102587992;TFAP4:0.865180326074;NR3C1:0.84815225905;ESRRA:0.837247070889;TBX4,5:0.830877160127;SPZ1:0.830252388924;TFCP2:0.81313806192;TEAD1:0.801414017647;TP53:0.798228594474;XBP1:0.777887232222;ZIC1..3:0.771753668371;CDC5L:0.720871090875;HOX{A6,A7,B6,B7}:0.719554546473;ARID5B:0.718293006483;TBP:0.714440163787;GFI1B:0.691692900246;NKX3-2:0.656634222008;MAFB:0.652322184947;NFE2L2:0.61036121084;POU3F1..4:0.568128396097;PPARG:0.566401324659;NR5A1,2:0.493590518271;TAL1_TCF{3,4,12}:0.455438242398;MYBL2:0.443626874684;HMGA1,2:0.430345886901;NFATC1..3:0.417954371008;ONECUT1,2:0.403353825321;MYFfamily:0.397080988074;AIRE:0.367899275781;YY1:0.351596412906;PAX5:0.309557500779;EBF1:0.289380679173;NFIX:0.280476130304;FOSL2:0.279302862764;FOX{I1,J2}:0.253437972217;PRDM1:0.211267304728;HAND1,2:0.199427984593;AR:0.19266164985;GTF2I:0.1906451971;BACH2:0.187190686133;ELK1,4_GABP{A,B1}:0.174142966796;HLF:0.171135208257;GTF2A1,2:0.169214534474;FOS_FOS{B,L1}_JUN{B,D}:0.156347725444;PAX4:0.120264220664;bHLH_family:0.0871568853987;EVI1:0.0869341425883;MTE{core}:0.0498129191781;CDX1,2,4:0.0458376530776;HIC1:0.0357899537035;PAX3,7:0.0323050629106;NR6A1:0.0303497359759;GATA4:0.0277278741641;JUN:-0.037669232998;FOXL1:-0.0645323235196;SOX17:-0.0664034650809;HNF1A:-0.0684607746165;PAX2:-0.104649828449;NKX2-1,4:-0.10892554048;NFE2:-0.118874365146;TFAP2{A,C}:-0.121229587816;STAT5{A,B}:-0.1332813795;LMO2:-0.139373602972;FOXD3:-0.159865631353;MYOD1:-0.185694979118;LEF1_TCF7_TCF7L1,2:-0.185951271801;RFX1:-0.192542551875;SREBF1,2:-0.21337858962;MEF2{A,B,C,D}:-0.244963600402;ZNF148:-0.247478914449;REST:-0.253080407398;HNF4A_NR2F1,2:-0.254348745199;MZF1:-0.262066810241;SOX2:-0.26480876224;STAT2,4,6:-0.275326389665;TFAP2B:-0.282569081005;LHX3,4:-0.333332359598;NHLH1,2:-0.337732589004;RFX2..5_RFXANK_RFXAP:-0.355495884822;ZBTB16:-0.359727968159;SNAI1..3:-0.363494175254;MAZ:-0.37074754173;TEF:-0.389494423602;DMAP1_NCOR{1,2}_SMARC:-0.389956348588;CEBPA,B_DDIT3:-0.393731355906;NRF1:-0.40928288166;T:-0.43691538281;ALX1:-0.447201024084;FOXP3:-0.456683709037;NANOG{mouse}:-0.463951545041;ZNF384:-0.468813993352;SP1:-0.478189616314;DBP:-0.484010395852;IRF1,2:-0.48682085637;XCPE1{core}:-0.495042261139;FOXM1:-0.496394420701;NFKB1_REL_RELA:-0.520371588968;ZNF423:-0.522387029899;MTF1:-0.523683646362;ETS1,2:-0.537827429668;FOXN1:-0.546671464129;SPIB:-0.55980314733;OCT4_SOX2{dimer}:-0.560641058683;IRF7:-0.579939357617;SPI1:-0.589016486916;RUNX1..3:-0.594275130491;FOX{D1,D2}:-0.595244044207;ZEB1:-0.606335530284;SOX5:-0.610912207537;GFI1:-0.621347628888;AHR_ARNT_ARNT2:-0.627022781242;RREB1:-0.637138412619;TOPORS:-0.641546789705;PAX1,9:-0.653522631772;ADNP_IRX_SIX_ZHX:-0.693477281525;TLX2:-0.701014408572;TGIF1:-0.703692494452;PATZ1:-0.717048027647;PRRX1,2:-0.718341881697;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.745856518227;PAX8:-0.771938386816;NKX2-3_NKX2-5:-0.785986426688;EGR1..3:-0.792474318922;MED-1{core}:-0.810791268943;CREB1:-0.817776025562;PBX1:-0.828075759804;PDX1:-0.828696969761;NANOG:-0.856769245185;NFIL3:-0.857116330416;ELF1,2,4:-0.86272466833;ZNF143:-0.863674971923;ATF5_CREB3:-0.866932529691;POU1F1:-0.909446264964;GATA6:-0.925130246285;ZFP161:-0.975051717357;RORA:-0.984710440203;FOXO1,3,4:-0.992421539568;NKX6-1,2:-0.995820670705;ATF2:-1.00632575569;MYB:-1.0974729912;POU5F1:-1.14393762419;CUX2:-1.20097599899;VSX1,2:-1.26720653696;FOX{F1,F2,J1}:-1.26984288024;E2F1..5:-1.28304624368;EP300:-1.2912787268;FOXP1:-1.32760144615;IKZF2:-1.33092149183;FOXQ1:-1.3343177507;SOX{8,9,10}:-1.34047619678;HBP1_HMGB_SSRP1_UBTF:-1.34494454437;PITX1..3:-1.47144708277;RBPJ:-1.48349503961;STAT1,3:-1.57474677276;NFY{A,B,C}:-1.58726145709;POU2F1..3:-1.68789807236;FOXA2:-1.70366436377;ATF4:-1.80370792396;TFDP1:-1.81509134777;BPTF:-1.85773850953;BREu{core}:-2.17734883539 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10570-108B3;search_select_hide=table117:FF:10570-108B3 | |||
}} | }} |
Latest revision as of 14:29, 3 June 2020
Name: | leiomyoma cell line:15242A |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11723 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11723
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11723
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0734 |
10 | 10 | 0.576 |
100 | 100 | 0.799 |
101 | 101 | 0.887 |
102 | 102 | 0.966 |
103 | 103 | 0.0222 |
104 | 104 | 0.816 |
105 | 105 | 0.114 |
106 | 106 | 0.0767 |
107 | 107 | 0.299 |
108 | 108 | 0.251 |
109 | 109 | 0.195 |
11 | 11 | 0.0448 |
110 | 110 | 0.185 |
111 | 111 | 0.655 |
112 | 112 | 0.0283 |
113 | 113 | 0.359 |
114 | 114 | 0.0122 |
115 | 115 | 0.0808 |
116 | 116 | 0.0579 |
117 | 117 | 0.268 |
118 | 118 | 0.281 |
119 | 119 | 0.197 |
12 | 12 | 0.776 |
120 | 120 | 0.23 |
121 | 121 | 0.731 |
122 | 122 | 0.398 |
123 | 123 | 0.0427 |
124 | 124 | 0.564 |
125 | 125 | 0.301 |
126 | 126 | 0.924 |
127 | 127 | 0.569 |
128 | 128 | 0.229 |
129 | 129 | 0.829 |
13 | 13 | 0.717 |
130 | 130 | 0.617 |
131 | 131 | 0.415 |
132 | 132 | 0.926 |
133 | 133 | 0.524 |
134 | 134 | 0.303 |
135 | 135 | 0.783 |
136 | 136 | 0.771 |
137 | 137 | 0.649 |
138 | 138 | 0.809 |
139 | 139 | 0.00804 |
14 | 14 | 0.609 |
140 | 140 | 0.935 |
141 | 141 | 0.71 |
142 | 142 | 0.888 |
143 | 143 | 0.03 |
144 | 144 | 0.644 |
145 | 145 | 0.363 |
146 | 146 | 0.962 |
147 | 147 | 0.0518 |
148 | 148 | 0.0612 |
149 | 149 | 0.0217 |
15 | 15 | 0.287 |
150 | 150 | 0.511 |
151 | 151 | 0.524 |
152 | 152 | 0.0593 |
153 | 153 | 0.877 |
154 | 154 | 0.655 |
155 | 155 | 0.162 |
156 | 156 | 0.503 |
157 | 157 | 0.974 |
158 | 158 | 0.0846 |
159 | 159 | 0.257 |
16 | 16 | 0.0188 |
160 | 160 | 0.245 |
161 | 161 | 0.609 |
162 | 162 | 0.487 |
163 | 163 | 0.277 |
164 | 164 | 0.166 |
165 | 165 | 0.683 |
166 | 166 | 0.231 |
167 | 167 | 0.849 |
168 | 168 | 0.93 |
169 | 169 | 0.00964 |
17 | 17 | 0.236 |
18 | 18 | 0.0599 |
19 | 19 | 0.0546 |
2 | 2 | 0.396 |
20 | 20 | 0.499 |
21 | 21 | 0.499 |
22 | 22 | 0.0903 |
23 | 23 | 0.174 |
24 | 24 | 0.465 |
25 | 25 | 0.632 |
26 | 26 | 0.503 |
27 | 27 | 0.153 |
28 | 28 | 0.721 |
29 | 29 | 0.189 |
3 | 3 | 0.146 |
30 | 30 | 0.619 |
31 | 31 | 0.189 |
32 | 32 | 8.11325e-5 |
33 | 33 | 0.949 |
34 | 34 | 0.792 |
35 | 35 | 0.236 |
36 | 36 | 0.352 |
37 | 37 | 0.0173 |
38 | 38 | 0.745 |
39 | 39 | 0.243 |
4 | 4 | 0.843 |
40 | 40 | 0.542 |
41 | 41 | 0.654 |
42 | 42 | 0.674 |
43 | 43 | 0.133 |
44 | 44 | 0.00535 |
45 | 45 | 0.555 |
46 | 46 | 0.0399 |
47 | 47 | 0.106 |
48 | 48 | 0.264 |
49 | 49 | 0.427 |
5 | 5 | 0.526 |
50 | 50 | 0.896 |
51 | 51 | 0.47 |
52 | 52 | 0.812 |
53 | 53 | 0.424 |
54 | 54 | 0.385 |
55 | 55 | 0.162 |
56 | 56 | 0.524 |
57 | 57 | 0.703 |
58 | 58 | 0.742 |
59 | 59 | 0.023 |
6 | 6 | 0.809 |
60 | 60 | 0.482 |
61 | 61 | 0.295 |
62 | 62 | 0.33 |
63 | 63 | 0.278 |
64 | 64 | 0.408 |
65 | 65 | 0.233 |
66 | 66 | 0.49 |
67 | 67 | 0.25 |
68 | 68 | 0.849 |
69 | 69 | 0.0585 |
7 | 7 | 0.734 |
70 | 70 | 0.00802 |
71 | 71 | 0.114 |
72 | 72 | 0.66 |
73 | 73 | 0.0149 |
74 | 74 | 0.454 |
75 | 75 | 0.163 |
76 | 76 | 0.881 |
77 | 77 | 0.0106 |
78 | 78 | 0.786 |
79 | 79 | 0.0157 |
8 | 8 | 0.0293 |
80 | 80 | 0.643 |
81 | 81 | 0.234 |
82 | 82 | 0.00962 |
83 | 83 | 0.748 |
84 | 84 | 0.505 |
85 | 85 | 0.0147 |
86 | 86 | 0.665 |
87 | 87 | 0.0635 |
88 | 88 | 0.897 |
89 | 89 | 0.00256 |
9 | 9 | 0.591 |
90 | 90 | 0.879 |
91 | 91 | 0.311 |
92 | 92 | 0.19 |
93 | 93 | 0.994 |
94 | 94 | 0.48 |
95 | 95 | 0.317 |
96 | 96 | 0.339 |
97 | 97 | 0.688 |
98 | 98 | 0.601 |
99 | 99 | 0.056 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11723
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102694 leiomyoma cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
14566 (disease of cellular proliferation)
0060072 (benign neoplasm)
0060084 (cell type benign neoplasm)
127 (leiomyoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102694 (leiomyoma cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)