FFCP PHASE1:Mm9::chrX:34529518..34529532,-: Difference between revisions
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{{FFCP|EntrezGene=56526|HGNC=|UniProt=|association_with_transcript=-4bp_to_uc009sxy.2_5end|description=CAGE_peak_3_at_Sept6_5end|id=chrX:34529518..34529532,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.40e-10!71;UBERON:0003075!3.40e-10!71;UBERON:0007284!3.40e-10!71;UBERON:0003056!3.10e-08!49;UBERON:0001017!7.99e-08!73;UBERON:0005743!7.99e-08!73;UBERON:0001049!9.29e-08!52;UBERON:0005068!9.29e-08!52;UBERON:0006241!9.29e-08!52;UBERON:0007135!9.29e-08!52;UBERON:0000033!1.12e-07!63;UBERON:0000153!1.63e-07!94;UBERON:0000073!3.03e-07!75;UBERON:0001016!3.03e-07!75;UBERON:0002020!4.42e-07!34;UBERON:0004121!9.43e-07!102;UBERON:0000924!9.43e-07!102;UBERON:0006601!9.43e-07!102;UBERON:0003080!9.62e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.08e-12,92;UBERON:0002346,1.14e-09,64;UBERON:0003075,1.14e-09,64;UBERON:0007284,1.14e-09,64;UBERON:0000073,3.65e-08,54;UBERON:0003056,4.88e-08,49;UBERON:0001049,5.44e-08,52;UBERON:0005068,5.44e-08,52;UBERON:0006241,5.44e-08,52;UBERON:0007135,5.44e-08,52;UBERON:0010371,8.64e-08,73;UBERON:0001017,1.11e-07,73;UBERON:0002020,2.46e-07,34;UBERON:0001016,6.23e-07,75;UBERON:0002021,6.56e-07,10;UBERON:0000411,6.56e-07,10;UBERON:0001950,6.56e-07,10;UBERON:0003080,9.95e-07,40|phase1_expression=2.40223270657191,0,0,0,0,0,0.233612640595526,0.645616617207881,2.956563165185,3.5109678948299,0.34243593645101,1.59544317990673,0.513602189793617,0.437102012094987,0,0.202475267389826,0,0.788655413395594,1.91960207048034,2.12194825899015,1.27564935226605,1.58865521921416,2.08959831311148,0.159992422793407,0.45881856213434,0.57423196411502,0,0,0,0,0,0.635030673459631,1.84519436275371,0,0,0.166234645358492,0.204169356262369,0.418531630736908,2.3440060335714,1.0470474879476,4.70585190424811,2.04913645487534,3.39857247121808,1.00717454380462,1.11514624341466,2.75320128242522,0,0.218025156380447,0.219686182734472,0.388859798148567,1.95980990275508,0,0.671130424230945,0.725362142011344,1.68046899571232,1.02903774414379,0.286533439938757,0.515672092277442,3.43937983461316,4.23192783417626,3.1691570175309,2.37191172448392,0,0.449949858640699,0,0,0.599200221036809,0.384218305321555,0.829516898467821,1.4850653216486,1.47227472945967,1.42825492201902,2.87129103237098,1.22490799214954,2.58782771749238,0,1.10115880999389,3.31987079021488,3.68655679814984,5.01167893374737,4.29991924931325,2.08365348222704,1.95428099300967,1.68828783009504,2.13917546887534,5.30331453852602,2.98980529678116,5.77838282058432,0.302904773332736,0.755715601067855,0.579728977403356,0,0,0,0,0,0.421333260395256,1.53387290320252,1.29893002301434,2.47337702157238,3.09855523508697,2.56652954828636,0,0,0.216491041011214,1.77351905832569,0.505524445014783,0.45673551887624,1.03575153458869,1.48442139064825,3.81667718885499,2.13125834818499,2.30615497256059,1.65794904607885,1.52865319276416,1.25666591329675,0,1.3013942122792,0,1.61766849947409,0.662524555381181,0.484875253135222,0,2.63502717310392,1.46612694769419,0.510914110417183,1.43778149407104,1.79970819298022,0.381210681219194,1.79748767285787,1.37250180845588,3.8952849154988,4.69325664519146,2.30143911597297,2.70124457927428,1.78465389374533,1.93494791315601,0.746441823660558,0,0.631325567659422,4.16385417480652,3.67843367093557,4.14142898552303,3.61691562805716,2.78949646520444,2.562274405697,2.06143794031403,0.517406741478031,10.1316956678436,9.64441008855878,8.62160508403349,5.91828477554452,7.78532297831674,5.92028683087683,1.64625709126355,1.99034266818493,2.80885274925294,0.51469581422943,0.568326998791185,3.31401236056803,5.39409937956521,5.22179978236943,7.10234206755631,5.3126342571799,3.23960937063494,4.41814495025775,3.75582761959467,3.03589890154641,2.30383789878873,1.97000956894914,1.05389452409612,0.146199987425332,1.09775057645525,0.402619256281115,3.15434922846191,1.85228302282712,0,0,4.47905326123991,1.62565670302307,2.57734922644187,2.01683524623343,1.33426826306922,0.190225626112559,0.474529061544512,1.4822905925161,1.25667604400135,0.198956472041151,0.19496408711912,0,0.216138049874694,0.398282546508734,2.65535061334314,2.97046132785295,1.1270773567308,1.62921062276251,1.74557238450863,1.8936671370386,1.20149420536089,0.295220295959204,0.156998727841375,0.863780147452604,0,0.500535317148282,0.982794975566015,1.12431056192427,0.405720242777006,0.964708639009667,1.01850340712568,0.287696137450811,0.810676133875177,0.549122826376163,0,1.11642284300551,0,0,0.179397413521912,0,0.554259570499814,3.22135400009824,2.28150967018836,1.69745085775188,2.58159273117352,1.34005005953453,2.14239276797412,0.585400943573396,1.26108115284953,1.10732344824387,0.637819074629948,0.655453258862952,0.863424909329478,0.144649058581512,0,0.54390568381871,0,0,2.0871576698413,1.64096361229084,2.62295912602681,1.00988370881749,1.57754109708128,1.95219372148319,2.36965737506079,0.955875191810208,0.222798674082394,0.849229592366497,1.21443210502468,1.16902343164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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=56526 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-4bp_to_uc009sxy.2_5end | |||
|cluster_id=chrX:34529518..34529532,- | |||
|description=CAGE_peak_3_at_Sept6_5end | |||
|id=chrX:34529518..34529532,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.40e-10!71;UBERON:0003075!3.40e-10!71;UBERON:0007284!3.40e-10!71;UBERON:0003056!3.10e-08!49;UBERON:0001017!7.99e-08!73;UBERON:0005743!7.99e-08!73;UBERON:0001049!9.29e-08!52;UBERON:0005068!9.29e-08!52;UBERON:0006241!9.29e-08!52;UBERON:0007135!9.29e-08!52;UBERON:0000033!1.12e-07!63;UBERON:0000153!1.63e-07!94;UBERON:0000073!3.03e-07!75;UBERON:0001016!3.03e-07!75;UBERON:0002020!4.42e-07!34;UBERON:0004121!9.43e-07!102;UBERON:0000924!9.43e-07!102;UBERON:0006601!9.43e-07!102;UBERON:0003080!9.62e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.08e-12,92;UBERON:0002346,1.14e-09,64;UBERON:0003075,1.14e-09,64;UBERON:0007284,1.14e-09,64;UBERON:0000073,3.65e-08,54;UBERON:0003056,4.88e-08,49;UBERON:0001049,5.44e-08,52;UBERON:0005068,5.44e-08,52;UBERON:0006241,5.44e-08,52;UBERON:0007135,5.44e-08,52;UBERON:0010371,8.64e-08,73;UBERON:0001017,1.11e-07,73;UBERON:0002020,2.46e-07,34;UBERON:0001016,6.23e-07,75;UBERON:0002021,6.56e-07,10;UBERON:0000411,6.56e-07,10;UBERON:0001950,6.56e-07,10;UBERON:0003080,9.95e-07,40 | |||
|phase1_expression=2.40223270657191,0,0,0,0,0,0.233612640595526,0.645616617207881,2.956563165185,3.5109678948299,0.34243593645101,1.59544317990673,0.513602189793617,0.437102012094987,0,0.202475267389826,0,0.788655413395594,1.91960207048034,2.12194825899015,1.27564935226605,1.58865521921416,2.08959831311148,0.159992422793407,0.45881856213434,0.57423196411502,0,0,0,0,0,0.635030673459631,1.84519436275371,0,0,0.166234645358492,0.204169356262369,0.418531630736908,2.3440060335714,1.0470474879476,4.70585190424811,2.04913645487534,3.39857247121808,1.00717454380462,1.11514624341466,2.75320128242522,0,0.218025156380447,0.219686182734472,0.388859798148567,1.95980990275508,0,0.671130424230945,0.725362142011344,1.68046899571232,1.02903774414379,0.286533439938757,0.515672092277442,3.43937983461316,4.23192783417626,3.1691570175309,2.37191172448392,0,0.449949858640699,0,0,0.599200221036809,0.384218305321555,0.829516898467821,1.4850653216486,1.47227472945967,1.42825492201902,2.87129103237098,1.22490799214954,2.58782771749238,0,1.10115880999389,3.31987079021488,3.68655679814984,5.01167893374737,4.29991924931325,2.08365348222704,1.95428099300967,1.68828783009504,2.13917546887534,5.30331453852602,2.98980529678116,5.77838282058432,0.302904773332736,0.755715601067855,0.579728977403356,0,0,0,0,0,0.421333260395256,1.53387290320252,1.29893002301434,2.47337702157238,3.09855523508697,2.56652954828636,0,0,0.216491041011214,1.77351905832569,0.505524445014783,0.45673551887624,1.03575153458869,1.48442139064825,3.81667718885499,2.13125834818499,2.30615497256059,1.65794904607885,1.52865319276416,1.25666591329675,0,1.3013942122792,0,1.61766849947409,0.662524555381181,0.484875253135222,0,2.63502717310392,1.46612694769419,0.510914110417183,1.43778149407104,1.79970819298022,0.381210681219194,1.79748767285787,1.37250180845588,3.8952849154988,4.69325664519146,2.30143911597297,2.70124457927428,1.78465389374533,1.93494791315601,0.746441823660558,0,0.631325567659422,4.16385417480652,3.67843367093557,4.14142898552303,3.61691562805716,2.78949646520444,2.562274405697,2.06143794031403,0.517406741478031,10.1316956678436,9.64441008855878,8.62160508403349,5.91828477554452,7.78532297831674,5.92028683087683,1.64625709126355,1.99034266818493,2.80885274925294,0.51469581422943,0.568326998791185,3.31401236056803,5.39409937956521,5.22179978236943,7.10234206755631,5.3126342571799,3.23960937063494,4.41814495025775,3.75582761959467,3.03589890154641,2.30383789878873,1.97000956894914,1.05389452409612,0.146199987425332,1.09775057645525,0.402619256281115,3.15434922846191,1.85228302282712,0,0,4.47905326123991,1.62565670302307,2.57734922644187,2.01683524623343,1.33426826306922,0.190225626112559,0.474529061544512,1.4822905925161,1.25667604400135,0.198956472041151,0.19496408711912,0,0.216138049874694,0.398282546508734,2.65535061334314,2.97046132785295,1.1270773567308,1.62921062276251,1.74557238450863,1.8936671370386,1.20149420536089,0.295220295959204,0.156998727841375,0.863780147452604,0,0.500535317148282,0.982794975566015,1.12431056192427,0.405720242777006,0.964708639009667,1.01850340712568,0.287696137450811,0.810676133875177,0.549122826376163,0,1.11642284300551,0,0,0.179397413521912,0,0.554259570499814,3.22135400009824,2.28150967018836,1.69745085775188,2.58159273117352,1.34005005953453,2.14239276797412,0.585400943573396,1.26108115284953,1.10732344824387,0.637819074629948,0.655453258862952,0.863424909329478,0.144649058581512,0,0.54390568381871,0,0,2.0871576698413,1.64096361229084,2.62295912602681,1.00988370881749,1.57754109708128,1.95219372148319,2.36965737506079,0.955875191810208,0.222798674082394,0.849229592366497,1.21443210502468,1.16902343164525,2.37172666767914,1.60660658210904,1.41940085208269,2.67098405500883,2.60619134965722,1.15479086080775,0,1.94224508923985,3.32555912661226,0.377210159511796,0.590603785761546,1.22974059177571,0,1.45413491791002,0,0.316036757935816,0,1.03135543248187,0.340439605753788,3.42116078659489,1.81102157295856,3.64372959553707,3.19212420556092,3.0322698992352,2.30368628842969,0.913394847343798,0.23467170806371,0,0,0,1.29171541356724,1.14594557363496,0.954978752025092,0.820704498725306,0,3.8939313422207,0.170870880797853,1.03193433981611,2.03713980106683,0.565105371014073,0.27338845544205,1.37266903923914,1.69978429993855,1.6794174278839,1.93479963326193,0,4.4287039101359,2.03319467126849,1.40406943068342,1.88179466413022,1.31017538247707,1.88810084938749,1.32245529160537,1.04702376793612,0.259229946583586,0,0.56369293868419,2.24274819065968,1.15820943319968,1.94451188344048,3.09983576346555,2.19642963138012,3.16864544343536,1.95306577265925,2.30690557736564,1.69108884578204,0.576060012515731,0.316011120628178,1.21635129174099,2.67048488628551,1.81889152168913,1.07416017400489,1.19208812868759,1.08175904567972,0.738447635872886,1.00966449948148,0.990688486514998,1.10908803650525,1.46186821109629,1.05833025804362,0.584384510907845,0.680191150845634,0,0.179427713218951,0,0.579568782096571,0.750729901804728,1.09890974560359,0,0.5015721040353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| |||
|short_description=p3@Sept6 | |||
}} |
Latest revision as of 20:03, 1 October 2015
Short description: | p3@Sept6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Sept6_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_uc009sxy.2_5end |
EntrezGene: | Sept6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.08e-12 | 92 |
neurectoderm | 1.14e-09 | 64 |
neural plate | 1.14e-09 | 64 |
presumptive neural plate | 1.14e-09 | 64 |
regional part of nervous system | 3.65e-08 | 54 |
pre-chordal neural plate | 4.88e-08 | 49 |
neural tube | 5.44e-08 | 52 |
neural rod | 5.44e-08 | 52 |
future spinal cord | 5.44e-08 | 52 |
neural keel | 5.44e-08 | 52 |
ecto-epithelium | 8.64e-08 | 73 |
central nervous system | 1.11e-07 | 73 |
gray matter | 2.46e-07 | 34 |
nervous system | 6.23e-07 | 75 |
occipital lobe | 6.56e-07 | 10 |
visual cortex | 6.56e-07 | 10 |
neocortex | 6.56e-07 | 10 |
anterior neural tube | 9.95e-07 | 40 |