FFCP PHASE1:Mm9::chrX:20527723..20527739,-: Difference between revisions
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{{FFCP|EntrezGene=13712|HGNC=|MCL_coexpression_id=13|UniProt=P41969,C7C6A8|association_with_transcript=0bp_to_ENSMUST00000009550,ENSMUST00000148133,NM_007922,uc009suc.1,uc009sud.1_5end|description=CAGE_peak_2_at_Elk1_5end|id=chrX:20527723..20527739,-|ontology_enrichment_celltype=CL:0002319!1.02e-12!43;CL:0000221!1.65e-12!44;CL:0000133!1.65e-12!44;CL:0000055!8.56e-12!50;CL:0000117!6.76e-10!23;CL:0000337!6.76e-10!23;CL:0000393!9.37e-09!39;CL:0000211!9.37e-09!39;CL:0000540!1.06e-08!33;CL:0000047!1.06e-08!33;CL:0000031!1.06e-08!33;CL:0000404!1.06e-08!33|ontology_enrichment_celltype_v019_2=CL:0002319,8.19e-13,43;CL:0000221,1.33e-12,44;CL:0000133,1.33e-12,44;CL:0000117,4.47e-10,23;CL:0000337,4.47e-10,23;CL:0000393,8.69e-09,39;CL:0000211,8.69e-09,39;CL:0000540,1.01e-08,33;CL:0000047,1.01e-08,33;CL:0000031,1.01e-08,33;CL:0000404,1.01e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.92e-25!73;UBERON:0005743!1.92e-25!73;UBERON:0000073!2.10e-25!75;UBERON:0001016!2.10e-25!75;UBERON:0004121!2.82e-23!102;UBERON:0000924!2.82e-23!102;UBERON:0006601!2.82e-23!102;UBERON:0001049!1.36e-21!52;UBERON:0005068!1.36e-21!52;UBERON:0006241!1.36e-21!52;UBERON:0007135!1.36e-21!52;UBERON:0000033!8.14e-21!63;UBERON:0000955!2.31e-20!50;UBERON:0006238!2.31e-20!50;UBERON:0002346!6.03e-20!71;UBERON:0003075!6.03e-20!71;UBERON:0007284!6.03e-20!71;UBERON:0002616!1.16e-19!49;UBERON:0003056!1.42e-17!49;UBERON:0003080!8.80e-16!40;UBERON:0002780!3.81e-15!39;UBERON:0001890!3.81e-15!39;UBERON:0006240!3.81e-15!39;UBERON:0002020!6.08e-15!34;UBERON:0002791!2.44e-13!29;UBERON:0003528!2.44e-13!29;UBERON:0001893!2.44e-13!29;UBERON:0000025!4.52e-11!114;UBERON:0004111!1.84e-10!122;UBERON:0000153!1.42e-09!94;UBERON:0000956!1.53e-09!21;UBERON:0001869!1.53e-09!21;UBERON:0000203!1.53e-09!21;UBERON:0007811!6.10e-09!86;UBERON:0002619!4.11e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.68e-25,73;UBERON:0001016,1.81e-25,75;UBERON:0004121,9.19e-25,95;UBERON:0000924,9.19e-25,95;UBERON:0006601,9.19e-25,95;UBERON:0002346,2.67e-22,64;UBERON:0003075,2.67e-22,64;UBERON:0007284,2.67e-22,64;UBERON:0001049,1.00e-21,52;UBERON:0005068,1.00e-21,52;UBERON:0006241,1.00e-21,52;UBERON:0007135,1.00e-21,52;UBERON:0000073,1.32e-21,54;UBERON:0010314,1.92e-20,92;UBERON:0000955,3.54e-20,47;UBERON:0006238,3.54e-20,47;UBERON:0010371,3.59e-20,73;UBERON:0002616,1.84e-19,46;UBERON:0003056,1.21e-17,49;UBERON:0003080,8.38e-16,40;UBERON:0002020,3.13e-15,34;UBERON:0002780,3.72e-15,39;UBERON:0001890,3.72e-15,39;UBERON:0006240,3.72e-15,39;UBERON:0003528,1.36e-13,29;UBERON:0002791,1.36e-13,29;UBERON:0001893,1.36e-13,29;UBERON:0000025,4.97e-11,114;UBERON:0004111,2.67e-10,122;UBERON:0000956,1.03e-09,21;UBERON:0001869,1.03e-09,21;UBERON:0000203,1.03e-09,21;UBERON:0002619,2.96e-08,17|phase1_expression=1.60148847104794,0,0,0,0,0.33575854382378,0.233612640595526,1.42035655785734,0.140788722151667,0,0.34243593645101,0.319088635981346,0.684802919724823,0.786783621770977,0.666219523631325,0.202475267389826,0,0.788655413395594,0.274228867211478,0.42438965179803,1.9559956734746,0.297872853602656,0,0.47997726838022,0.22940928106717,0,1.7230479846363,0,0.380046838912748,0.252030129759931,0.221730510655305,0,3.69038872550742,0,1.1554064790051,0.332469290716985,0.204169356262369,0,0,1.57057123192139,0.588231488031014,0,0,1.51076181570693,2.33166941804883,2.56965453026354,12.5182615095686,6.5407546914134,3.95435128922049,4.6663175777828,5.31948402176378,2.87505128729943,0.671130424230945,0.725362142011344,0,2.31533492432352,1.43266719969378,2.57836046138721,4.04632921719196,3.1739458756322,6.33831403506179,3.38844532069132,4.4464739805557,2.2497492932035,2.96659908770092,2.1314403448383,3.59520132622086,4.2264013585371,2.59224030771194,4.45519596494579,2.3135745748652,4.57041575046086,3.75476519617743,3.06226998037385,4.98396449294829,8.27296907949019,1.10115880999389,3.83062014255563,3.37934373163736,3.29715719325485,5.6722339033494,4.16730696445408,3.62937898701795,4.50210088025344,3.66715794664344,2.94628585473668,2.98980529678116,2.05039390407831,1.81742863999642,2.41828992341714,0.289864488701678,0,0,0,1.94932925234301,0.896053774194671,0.842666520790511,1.70430322578058,0.779358013808606,2.47337702157238,1.83096445709685,1.28326477414318,2.54805239706646,0,0.649473123033642,0.506719730950197,0,1.1418387971906,1.29468941823586,2.07818994690755,1.21439728736295,1.52232739156071,2.07553947530453,1.05505848386836,1.52865319276416,1.50799909595611,0.741584903203122,2.02439099687876,0,0.970601099684455,1.10420759230197,0.484875253135222,1.86391761218122,8.49064311333487,7.12118803165747,0.510914110417183,0,0,0.127070227073065,5.54225365797844,2.28750301409313,8.04187853522332,7.30062144807561,3.58001640262463,5.61027720310812,4.2182728397617,2.74966282395854,1.11966273549084,1.51633655060205,2.73574412652416,2.21204753036596,1.60931473103431,2.16074555766419,2.41127708537144,3.81004395247436,2.562274405697,3.84177070694888,3.62184719034622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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13712 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=P41969,C7C6A8 | |||
|association_with_transcript=0bp_to_ENSMUST00000009550,ENSMUST00000148133,NM_007922,uc009suc.1,uc009sud.1_5end | |||
|cluster_id=chrX:20527723..20527739,- | |||
|description=CAGE_peak_2_at_Elk1_5end | |||
|id=chrX:20527723..20527739,- | |||
|ontology_enrichment_celltype=CL:0002319!1.02e-12!43;CL:0000221!1.65e-12!44;CL:0000133!1.65e-12!44;CL:0000055!8.56e-12!50;CL:0000117!6.76e-10!23;CL:0000337!6.76e-10!23;CL:0000393!9.37e-09!39;CL:0000211!9.37e-09!39;CL:0000540!1.06e-08!33;CL:0000047!1.06e-08!33;CL:0000031!1.06e-08!33;CL:0000404!1.06e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,8.19e-13,43;CL:0000221,1.33e-12,44;CL:0000133,1.33e-12,44;CL:0000117,4.47e-10,23;CL:0000337,4.47e-10,23;CL:0000393,8.69e-09,39;CL:0000211,8.69e-09,39;CL:0000540,1.01e-08,33;CL:0000047,1.01e-08,33;CL:0000031,1.01e-08,33;CL:0000404,1.01e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.92e-25!73;UBERON:0005743!1.92e-25!73;UBERON:0000073!2.10e-25!75;UBERON:0001016!2.10e-25!75;UBERON:0004121!2.82e-23!102;UBERON:0000924!2.82e-23!102;UBERON:0006601!2.82e-23!102;UBERON:0001049!1.36e-21!52;UBERON:0005068!1.36e-21!52;UBERON:0006241!1.36e-21!52;UBERON:0007135!1.36e-21!52;UBERON:0000033!8.14e-21!63;UBERON:0000955!2.31e-20!50;UBERON:0006238!2.31e-20!50;UBERON:0002346!6.03e-20!71;UBERON:0003075!6.03e-20!71;UBERON:0007284!6.03e-20!71;UBERON:0002616!1.16e-19!49;UBERON:0003056!1.42e-17!49;UBERON:0003080!8.80e-16!40;UBERON:0002780!3.81e-15!39;UBERON:0001890!3.81e-15!39;UBERON:0006240!3.81e-15!39;UBERON:0002020!6.08e-15!34;UBERON:0002791!2.44e-13!29;UBERON:0003528!2.44e-13!29;UBERON:0001893!2.44e-13!29;UBERON:0000025!4.52e-11!114;UBERON:0004111!1.84e-10!122;UBERON:0000153!1.42e-09!94;UBERON:0000956!1.53e-09!21;UBERON:0001869!1.53e-09!21;UBERON:0000203!1.53e-09!21;UBERON:0007811!6.10e-09!86;UBERON:0002619!4.11e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.68e-25,73;UBERON:0001016,1.81e-25,75;UBERON:0004121,9.19e-25,95;UBERON:0000924,9.19e-25,95;UBERON:0006601,9.19e-25,95;UBERON:0002346,2.67e-22,64;UBERON:0003075,2.67e-22,64;UBERON:0007284,2.67e-22,64;UBERON:0001049,1.00e-21,52;UBERON:0005068,1.00e-21,52;UBERON:0006241,1.00e-21,52;UBERON:0007135,1.00e-21,52;UBERON:0000073,1.32e-21,54;UBERON:0010314,1.92e-20,92;UBERON:0000955,3.54e-20,47;UBERON:0006238,3.54e-20,47;UBERON:0010371,3.59e-20,73;UBERON:0002616,1.84e-19,46;UBERON:0003056,1.21e-17,49;UBERON:0003080,8.38e-16,40;UBERON:0002020,3.13e-15,34;UBERON:0002780,3.72e-15,39;UBERON:0001890,3.72e-15,39;UBERON:0006240,3.72e-15,39;UBERON:0003528,1.36e-13,29;UBERON:0002791,1.36e-13,29;UBERON:0001893,1.36e-13,29;UBERON:0000025,4.97e-11,114;UBERON:0004111,2.67e-10,122;UBERON:0000956,1.03e-09,21;UBERON:0001869,1.03e-09,21;UBERON:0000203,1.03e-09,21;UBERON:0002619,2.96e-08,17 | |||
|phase1_expression=1.60148847104794,0,0,0,0,0.33575854382378,0.233612640595526,1.42035655785734,0.140788722151667,0,0.34243593645101,0.319088635981346,0.684802919724823,0.786783621770977,0.666219523631325,0.202475267389826,0,0.788655413395594,0.274228867211478,0.42438965179803,1.9559956734746,0.297872853602656,0,0.47997726838022,0.22940928106717,0,1.7230479846363,0,0.380046838912748,0.252030129759931,0.221730510655305,0,3.69038872550742,0,1.1554064790051,0.332469290716985,0.204169356262369,0,0,1.57057123192139,0.588231488031014,0,0,1.51076181570693,2.33166941804883,2.56965453026354,12.5182615095686,6.5407546914134,3.95435128922049,4.6663175777828,5.31948402176378,2.87505128729943,0.671130424230945,0.725362142011344,0,2.31533492432352,1.43266719969378,2.57836046138721,4.04632921719196,3.1739458756322,6.33831403506179,3.38844532069132,4.4464739805557,2.2497492932035,2.96659908770092,2.1314403448383,3.59520132622086,4.2264013585371,2.59224030771194,4.45519596494579,2.3135745748652,4.57041575046086,3.75476519617743,3.06226998037385,4.98396449294829,8.27296907949019,1.10115880999389,3.83062014255563,3.37934373163736,3.29715719325485,5.6722339033494,4.16730696445408,3.62937898701795,4.50210088025344,3.66715794664344,2.94628585473668,2.98980529678116,2.05039390407831,1.81742863999642,2.41828992341714,0.289864488701678,0,0,0,1.94932925234301,0.896053774194671,0.842666520790511,1.70430322578058,0.779358013808606,2.47337702157238,1.83096445709685,1.28326477414318,2.54805239706646,0,0.649473123033642,0.506719730950197,0,1.1418387971906,1.29468941823586,2.07818994690755,1.21439728736295,1.52232739156071,2.07553947530453,1.05505848386836,1.52865319276416,1.50799909595611,0.741584903203122,2.02439099687876,0,0.970601099684455,1.10420759230197,0.484875253135222,1.86391761218122,8.49064311333487,7.12118803165747,0.510914110417183,0,0,0.127070227073065,5.54225365797844,2.28750301409313,8.04187853522332,7.30062144807561,3.58001640262463,5.61027720310812,4.2182728397617,2.74966282395854,1.11966273549084,1.51633655060205,2.73574412652416,2.21204753036596,1.60931473103431,2.16074555766419,2.41127708537144,3.81004395247436,2.562274405697,3.84177070694888,3.62184719034622,2.80238390812695,3.59301552318857,2.11141348996739,3.28793598641362,1.11218899690239,2.43776516565517,1.64625709126355,2.9855140022774,0,0,0.284163499395593,2.07125772535502,2.11073453982987,2.70093092191522,2.3674473558521,2.55793501271625,2.1597395804233,1.86027155800326,1.87791380979733,3.15266424391358,2.79751744852917,2.29834449710733,3.32382119138008,1.46199987425332,1.97595103761946,1.47627060636409,6.09840850835969,5.04232600658494,0,0.528901133327089,2.34617075588757,1.39342003116263,2.19074684247559,1.4117846723634,1.55664630691409,2.09248188723815,0.949058123089023,1.81168850196412,1.50801125280162,1.79060824837036,0.779856348476481,2.69645822596266,0.216138049874694,0.796565093017469,2.27601481143698,1.94222471436539,4.50830942692322,2.24016460629846,2.32742984601151,2.52488951605147,1.89709611372772,1.03327103585722,1.255989822731,1.1105744752962,1.1858105083486,0.333690211432188,0.786235980452812,0.674586337154561,1.42002084971952,0.72353147925725,0.763877555344259,0.863088412352432,1.29708181420028,0.549122826376163,0,1.48856379067401,1.24815069245824,2.02063102357689,0.358794827043824,2.41221760681684,1.66277871149944,1.89491411770485,2.28150967018836,1.35796068620151,1.64283173801951,2.1775813467436,2.38043640886014,1.56106918286239,1.7339865851681,2.43611158613652,2.39182152986231,2.13022309130459,1.20879487306127,1.01254341007058,0,2.17562273527484,0.983528546038072,1.37968373152366,3.85321415970701,2.57865710502847,1.80328439914343,2.27223834483936,1.57754109708128,0.780877488593277,2.15423397732799,1.67278158566786,1.33679204449436,3.11384183867716,2.83367491172426,2.92255857911312,2.37172666767914,6.74774764485795,2.55492153374884,2.84904965867608,2.93196526836437,2.8044920905331,2.65490276679926,1.94224508923985,1.51161778482376,0.943025398779491,1.77181135728464,1.22974059177571,0.775284879504663,2.18120237686503,0.712994756769443,0.948110273807448,1.05418608574999,2.06271086496374,3.40439605753788,1.62054984628179,2.8458910432206,2.14337035031592,2.83744373827638,3.0322698992352,0.987294123612726,3.65357938937519,1.64270195644597,0.847328283455281,0.882113592219848,2.96795255294664,1.77610869365496,2.11095237248546,2.02932984805332,1.64140899745061,0.582961673259701,3.15223013417866,0.341741761595705,1.03193433981611,0.740778109478847,0.565105371014073,0.27338845544205,0.457556346413045,0.169978429993855,1.39951452323658,0.552799895217695,0.954670618015114,2.53068794864908,0.813277868507395,2.26811215725783,0.836353184057875,1.52853794622324,1.61837215661785,2.23164330458407,1.30877970992015,1.03691978633434,1.86401793926078,0,2.0932316446157,2.31641886639937,3.11121901350476,2.45403664607689,3.04121025883401,1.76035857968631,3.6457227756306,2.72634295506848,1.20792060413003,1.15212002503146,1.89606672376907,1.21635129174099,1.1298205288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| |||
|short_description=p2@Elk1 | |||
}} |
Latest revision as of 19:40, 1 October 2015
Short description: | p2@Elk1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Elk1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000009550, ENSMUST00000148133, NM_007922, uc009suc.1, uc009sud.1_5end |
EntrezGene: | Elk1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 8.19e-13 | 43 |
ectodermal cell | 1.33e-12 | 44 |
neurectodermal cell | 1.33e-12 | 44 |
CNS neuron (sensu Vertebrata) | 4.47e-10 | 23 |
neuroblast (sensu Vertebrata) | 4.47e-10 | 23 |
electrically responsive cell | 8.69e-09 | 39 |
electrically active cell | 8.69e-09 | 39 |
neuron | 1.01e-08 | 33 |
neuronal stem cell | 1.01e-08 | 33 |
neuroblast | 1.01e-08 | 33 |
electrically signaling cell | 1.01e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.68e-25 | 73 |
nervous system | 1.81e-25 | 75 |
ectoderm-derived structure | 9.19e-25 | 95 |
ectoderm | 9.19e-25 | 95 |
presumptive ectoderm | 9.19e-25 | 95 |
neurectoderm | 2.67e-22 | 64 |
neural plate | 2.67e-22 | 64 |
presumptive neural plate | 2.67e-22 | 64 |
neural tube | 1.00e-21 | 52 |
neural rod | 1.00e-21 | 52 |
future spinal cord | 1.00e-21 | 52 |
neural keel | 1.00e-21 | 52 |
regional part of nervous system | 1.32e-21 | 54 |
structure with developmental contribution from neural crest | 1.92e-20 | 92 |
brain | 3.54e-20 | 47 |
future brain | 3.54e-20 | 47 |
ecto-epithelium | 3.59e-20 | 73 |
regional part of brain | 1.84e-19 | 46 |
pre-chordal neural plate | 1.21e-17 | 49 |
anterior neural tube | 8.38e-16 | 40 |
gray matter | 3.13e-15 | 34 |
regional part of forebrain | 3.72e-15 | 39 |
forebrain | 3.72e-15 | 39 |
future forebrain | 3.72e-15 | 39 |
brain grey matter | 1.36e-13 | 29 |
regional part of telencephalon | 1.36e-13 | 29 |
telencephalon | 1.36e-13 | 29 |
tube | 4.97e-11 | 114 |
anatomical conduit | 2.67e-10 | 122 |
cerebral cortex | 1.03e-09 | 21 |
cerebral hemisphere | 1.03e-09 | 21 |
pallium | 1.03e-09 | 21 |
regional part of cerebral cortex | 2.96e-08 | 17 |