FFCP PHASE1:Mm9::chr9:45792860..45792891,-: Difference between revisions
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{{FFCP|EntrezGene=18475|HGNC=|MCL_coexpression_id=483|UniProt=F8WIW7|association_with_transcript=0bp_to_ENSMUST00000003215_5end|description=CAGE_peak_2_at_Pafah1b2_5end|id=chr9:45792860..45792891,-|ontology_enrichment_celltype=CL:0000117!1.35e-12!23;CL:0000337!1.35e-12!23;CL:0000540!3.97e-11!33;CL:0000047!3.97e-11!33;CL:0000031!3.97e-11!33;CL:0000404!3.97e-11!33;CL:0000393!7.34e-11!39;CL:0000211!7.34e-11!39;CL:0000221!2.07e-07!44;CL:0000133!2.07e-07!44;CL:0002319!5.26e-07!43;CL:0000055!9.58e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.35e-12,23;CL:0000337,1.35e-12,23;CL:0000540,3.97e-11,33;CL:0000047,3.97e-11,33;CL:0000031,3.97e-11,33;CL:0000404,3.97e-11,33;CL:0000393,7.34e-11,39;CL:0000211,7.34e-11,39;CL:0000221,2.07e-07,44;CL:0000133,2.07e-07,44;CL:0002319,5.26e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.66e-21!71;UBERON:0003075!2.66e-21!71;UBERON:0007284!2.66e-21!71;UBERON:0001017!1.11e-19!73;UBERON:0005743!1.11e-19!73;UBERON:0000073!4.61e-19!75;UBERON:0001016!4.61e-19!75;UBERON:0001049!9.25e-19!52;UBERON:0005068!9.25e-19!52;UBERON:0006241!9.25e-19!52;UBERON:0007135!9.25e-19!52;UBERON:0000033!2.16e-18!63;UBERON:0004121!1.60e-17!102;UBERON:0000924!1.60e-17!102;UBERON:0006601!1.60e-17!102;UBERON:0000955!1.75e-17!50;UBERON:0006238!1.75e-17!50;UBERON:0002616!1.78e-17!49;UBERON:0003056!2.09e-16!49;UBERON:0000153!3.40e-15!94;UBERON:0003080!4.91e-15!40;UBERON:0002780!1.18e-14!39;UBERON:0001890!1.18e-14!39;UBERON:0006240!1.18e-14!39;UBERON:0007811!3.02e-13!86;UBERON:0002020!5.32e-12!34;UBERON:0002791!1.28e-09!29;UBERON:0003528!1.28e-09!29;UBERON:0001893!1.28e-09!29;UBERON:0000025!8.78e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.13e-20,64;UBERON:0003075,1.13e-20,64;UBERON:0007284,1.13e-20,64;UBERON:0010314,2.51e-20,92;UBERON:0000073,4.01e-20,54;UBERON:0001017,1.11e-19,73;UBERON:0001016,4.60e-19,75;UBERON:0001049,9.25e-19,52;UBERON:0005068,9.25e-19,52;UBERON:0006241,9.25e-19,52;UBERON:0007135,9.25e-19,52;UBERON:0010371,1.66e-17,73;UBERON:0004121,1.57e-16,95;UBERON:0000924,1.57e-16,95;UBERON:0006601,1.57e-16,95;UBERON:0003056,2.09e-16,49;UBERON:0000955,1.51e-15,47;UBERON:0006238,1.51e-15,47;UBERON:0002616,1.55e-15,46;UBERON:0003080,4.91e-15,40;UBERON:0002780,1.18e-14,39;UBERON:0001890,1.18e-14,39;UBERON:0006240,1.18e-14,39;UBERON:0002020,5.32e-12,34;UBERON:0003528,1.28e-09,29;UBERON:0002791,1.28e-09,29;UBERON:0001893,1.28e-09,29;UBERON:0000025,8.74e-07,114|phase1_expression=21.2997966649376,4.18770489167233,1.36499771816861,1.20985684522732,0.500895729946347,2.01455126294268,2.10251376535973,4.13194635013044,12.8117737158017,11.9372908424217,2.73948749160808,3.82906363177615,3.59521532855532,3.2345548895029,2.99798785634096,2.63217847606774,6.29605690315332,1.89277299214943,3.56497527374921,1.69755860719212,10.5453679787327,5.65958421845046,6.00759515019551,2.23989391910769,2.52350209173887,1.72269589234506,3.01533397311352,5.17130958446134,2.47030445293286,3.52842181663903,2.43903561720835,2.54012269383853,4.30545351309199,0,1.1554064790051,1.66234645358492,2.04169356262369,4.60384793810598,2.3440060335714,4.18818995179039,2.35292595212406,5.46436387966757,4.36959317728038,13.3450627054112,11.8611009526832,9.54443111240744,14.0830441982647,3.2703773457067,2.63623419281366,5.8328969722285,5.03951117851305,1.43752564364972,5.20126078778983,5.80289713609076,6.04968838456435,11.3194151855817,10.3152038377952,13.4074743992135,28.7289374420629,25.3915670050576,22.1840991227163,6.09920157724438,4.4464739805557,3.1496490104849,2.96659908770092,2.8419204597844,5.39280198933128,8.4528027170742,20.5305432370786,16.605730414798,18.9292465216244,17.9960120174396,22.5285911770646,16.6587486932338,18.3064849644831,12.8690630125403,28.6301290598411,24.6436562504412,23.962619187974,25.5859398196576,25.0676143470602,29.6920621217353,20.6595419261022,15.757353080887,22.9197371665215,18.2669722993674,19.2201769078789,26.8415201988433,8.17842887998388,7.02815508993105,7.8263411949453,3.44169550792555,3.39985666853875,0,1.29955283489534,0.448026887097336,3.08977724289854,3.2381761289831,2.85764605063156,3.18005617059306,20.703982707172,7.69958864485907,5.09610479413291,14.2213340630666,5.41227602528035,3.04031838570118,2.52762222507392,1.7127581957859,1.29468941823586,7.57054909230606,19.7773272513395,14.6143429589828,15.912469310668,13.1128697280782,14.1106448562846,6.40899615781345,9.64060374164058,2.16899035379867,7.07688441559899,11.6472131962135,6.8460870722722,4.84875253135222,0,12.296793474485,12.3573557019938,2.55457055208591,6.4700167233197,5.39912457894067,4.57452817463033,17.5255048103643,16.0125210986519,14.1989417887537,13.3844726548053,15.0872119824895,15.9996794310861,18.3332627266566,21.7936238639677,4.35424397135326,4.54900965180614,4.62972082950243,17.9566211288531,21.6107978167465,21.9675798362526,18.0845781402858,12.7908618404496,16.6547836370305,12.7434345401231,9.05461797586555,15.3053274982318,17.2086532952716,17.595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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18475 | |||
|HGNC= | |||
|MCL_coexpression_id=483 | |||
|TSSclassifier=NA | |||
|UniProt=F8WIW7 | |||
|association_with_transcript=0bp_to_ENSMUST00000003215_5end | |||
|cluster_id=chr9:45792860..45792891,- | |||
|description=CAGE_peak_2_at_Pafah1b2_5end | |||
|id=chr9:45792860..45792891,- | |||
|ontology_enrichment_celltype=CL:0000117!1.35e-12!23;CL:0000337!1.35e-12!23;CL:0000540!3.97e-11!33;CL:0000047!3.97e-11!33;CL:0000031!3.97e-11!33;CL:0000404!3.97e-11!33;CL:0000393!7.34e-11!39;CL:0000211!7.34e-11!39;CL:0000221!2.07e-07!44;CL:0000133!2.07e-07!44;CL:0002319!5.26e-07!43;CL:0000055!9.58e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.35e-12,23;CL:0000337,1.35e-12,23;CL:0000540,3.97e-11,33;CL:0000047,3.97e-11,33;CL:0000031,3.97e-11,33;CL:0000404,3.97e-11,33;CL:0000393,7.34e-11,39;CL:0000211,7.34e-11,39;CL:0000221,2.07e-07,44;CL:0000133,2.07e-07,44;CL:0002319,5.26e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.66e-21!71;UBERON:0003075!2.66e-21!71;UBERON:0007284!2.66e-21!71;UBERON:0001017!1.11e-19!73;UBERON:0005743!1.11e-19!73;UBERON:0000073!4.61e-19!75;UBERON:0001016!4.61e-19!75;UBERON:0001049!9.25e-19!52;UBERON:0005068!9.25e-19!52;UBERON:0006241!9.25e-19!52;UBERON:0007135!9.25e-19!52;UBERON:0000033!2.16e-18!63;UBERON:0004121!1.60e-17!102;UBERON:0000924!1.60e-17!102;UBERON:0006601!1.60e-17!102;UBERON:0000955!1.75e-17!50;UBERON:0006238!1.75e-17!50;UBERON:0002616!1.78e-17!49;UBERON:0003056!2.09e-16!49;UBERON:0000153!3.40e-15!94;UBERON:0003080!4.91e-15!40;UBERON:0002780!1.18e-14!39;UBERON:0001890!1.18e-14!39;UBERON:0006240!1.18e-14!39;UBERON:0007811!3.02e-13!86;UBERON:0002020!5.32e-12!34;UBERON:0002791!1.28e-09!29;UBERON:0003528!1.28e-09!29;UBERON:0001893!1.28e-09!29;UBERON:0000025!8.78e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.13e-20,64;UBERON:0003075,1.13e-20,64;UBERON:0007284,1.13e-20,64;UBERON:0010314,2.51e-20,92;UBERON:0000073,4.01e-20,54;UBERON:0001017,1.11e-19,73;UBERON:0001016,4.60e-19,75;UBERON:0001049,9.25e-19,52;UBERON:0005068,9.25e-19,52;UBERON:0006241,9.25e-19,52;UBERON:0007135,9.25e-19,52;UBERON:0010371,1.66e-17,73;UBERON:0004121,1.57e-16,95;UBERON:0000924,1.57e-16,95;UBERON:0006601,1.57e-16,95;UBERON:0003056,2.09e-16,49;UBERON:0000955,1.51e-15,47;UBERON:0006238,1.51e-15,47;UBERON:0002616,1.55e-15,46;UBERON:0003080,4.91e-15,40;UBERON:0002780,1.18e-14,39;UBERON:0001890,1.18e-14,39;UBERON:0006240,1.18e-14,39;UBERON:0002020,5.32e-12,34;UBERON:0003528,1.28e-09,29;UBERON:0002791,1.28e-09,29;UBERON:0001893,1.28e-09,29;UBERON:0000025,8.74e-07,114 | |||
|phase1_expression=21.2997966649376,4.18770489167233,1.36499771816861,1.20985684522732,0.500895729946347,2.01455126294268,2.10251376535973,4.13194635013044,12.8117737158017,11.9372908424217,2.73948749160808,3.82906363177615,3.59521532855532,3.2345548895029,2.99798785634096,2.63217847606774,6.29605690315332,1.89277299214943,3.56497527374921,1.69755860719212,10.5453679787327,5.65958421845046,6.00759515019551,2.23989391910769,2.52350209173887,1.72269589234506,3.01533397311352,5.17130958446134,2.47030445293286,3.52842181663903,2.43903561720835,2.54012269383853,4.30545351309199,0,1.1554064790051,1.66234645358492,2.04169356262369,4.60384793810598,2.3440060335714,4.18818995179039,2.35292595212406,5.46436387966757,4.36959317728038,13.3450627054112,11.8611009526832,9.54443111240744,14.0830441982647,3.2703773457067,2.63623419281366,5.8328969722285,5.03951117851305,1.43752564364972,5.20126078778983,5.80289713609076,6.04968838456435,11.3194151855817,10.3152038377952,13.4074743992135,28.7289374420629,25.3915670050576,22.1840991227163,6.09920157724438,4.4464739805557,3.1496490104849,2.96659908770092,2.8419204597844,5.39280198933128,8.4528027170742,20.5305432370786,16.605730414798,18.9292465216244,17.9960120174396,22.5285911770646,16.6587486932338,18.3064849644831,12.8690630125403,28.6301290598411,24.6436562504412,23.962619187974,25.5859398196576,25.0676143470602,29.6920621217353,20.6595419261022,15.757353080887,22.9197371665215,18.2669722993674,19.2201769078789,26.8415201988433,8.17842887998388,7.02815508993105,7.8263411949453,3.44169550792555,3.39985666853875,0,1.29955283489534,0.448026887097336,3.08977724289854,3.2381761289831,2.85764605063156,3.18005617059306,20.703982707172,7.69958864485907,5.09610479413291,14.2213340630666,5.41227602528035,3.04031838570118,2.52762222507392,1.7127581957859,1.29468941823586,7.57054909230606,19.7773272513395,14.6143429589828,15.912469310668,13.1128697280782,14.1106448562846,6.40899615781345,9.64060374164058,2.16899035379867,7.07688441559899,11.6472131962135,6.8460870722722,4.84875253135222,0,12.296793474485,12.3573557019938,2.55457055208591,6.4700167233197,5.39912457894067,4.57452817463033,17.5255048103643,16.0125210986519,14.1989417887537,13.3844726548053,15.0872119824895,15.9996794310861,18.3332627266566,21.7936238639677,4.35424397135326,4.54900965180614,4.62972082950243,17.9566211288531,21.6107978167465,21.9675798362526,18.0845781402858,12.7908618404496,16.6547836370305,12.7434345401231,9.05461797586555,15.3053274982318,17.2086532952716,17.5951124163949,19.9468116509093,25.8583941779806,17.0643561595862,15.0220959577799,18.7092210809384,2.80885274925294,2.57347907114715,3.6941254921427,16.5700618028402,18.9966108584688,16.3856475929524,15.3884078130387,14.9540816128027,12.9584374825398,12.0917651270212,12.0723030629829,9.80828875884224,10.2027106946358,5.08919138645195,3.72916523910936,2.77779976108131,3.51280184465681,3.35516046900929,19.5569652164638,19.8605901892019,2.64335026387038,2.3800550999719,20.049095550312,19.9723537799977,13.5310834388198,10.8909103296605,12.2307924114679,12.5548913234289,3.32170343081158,11.5289268306808,8.54539709920916,9.74886713001639,8.96834800747953,2.69645822596266,2.80979464837102,1.59313018603494,21.8118086096044,16.2232887905815,16.9061603509621,7.94240178596726,12.2190066915604,10.8009162631091,6.19718063817721,3.09981310757165,2.98297582898612,3.57851775373222,1.1858105083486,10.8449318715461,10.2210677458866,13.4917267430912,13.7944882544182,13.9882752656402,7.38414970166117,5.17853047411459,5.67473293712624,4.66754402419738,5.75072826109418,2.60498663367952,2.18426371180192,3.78868316920668,2.33216637578486,1.92977408545347,4.24932337383191,19.7071068241304,13.3631280682461,10.0149600607361,11.7345124144251,9.38035041674168,5.71304738126433,8.00047956216975,7.25121662888479,6.42247599981447,7.17546458958692,4.09658286789345,5.00786447411097,4.91806799177139,4.52373851817817,2.17562273527484,1.47529281905711,4.41498794087572,22.3165320083031,25.5521476771003,13.7705354116407,2.01976741763498,12.6203287766503,12.4940398174924,15.2950612390287,8.60287672629187,6.90675889655422,8.49229592366497,10.5250782435473,8.18316402151673,11.4633455604492,12.5315313404505,3.83238230062325,21.9020692510724,21.3381916753185,4.61916344323099,1.32745138339963,16.9946445308487,12.9999129494843,9.05304382828311,9.7449624650655,12.604841065701,11.1124166062335,7.99774204850512,10.6949213515416,5.05658812697306,5.27093042874994,2.06271086496374,23.1498931912576,19.4465981553815,18.3689330971511,25.0774330986963,23.4089108407801,21.0475204770443,25.6696472139309,24.0527309800533,7.74416636610244,4.66030555900404,3.30792597082443,2.4732937941222,8.23468576149118,7.72005439080395,5.96861720015682,3.77524069413641,6.12109756922687,24.1052892613663,2.39219233116994,14.0343070214991,11.2968661695524,5.65105371014073,3.41735569302563,2.51655990527175,13.9382312594961,16.2343684695443,13.4053974590291,0.954670618015114,14.3932877079417,13.2157653632452,16.7408278273792,1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| |||
|short_description=p2@Pafah1b2 | |||
}} |
Latest revision as of 17:59, 26 September 2015
Short description: | p2@Pafah1b2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pafah1b2_5end |
Coexpression cluster: | MCL_coexpression_mm9:483 |
Association with transcript: | 0bp_to_ENSMUST00000003215_5end |
EntrezGene: | Pafah1b2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.35e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.35e-12 | 23 |
neuron | 3.97e-11 | 33 |
neuronal stem cell | 3.97e-11 | 33 |
neuroblast | 3.97e-11 | 33 |
electrically signaling cell | 3.97e-11 | 33 |
electrically responsive cell | 7.34e-11 | 39 |
electrically active cell | 7.34e-11 | 39 |
ectodermal cell | 2.07e-07 | 44 |
neurectodermal cell | 2.07e-07 | 44 |
neural cell | 5.26e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.13e-20 | 64 |
neural plate | 1.13e-20 | 64 |
presumptive neural plate | 1.13e-20 | 64 |
structure with developmental contribution from neural crest | 2.51e-20 | 92 |
regional part of nervous system | 4.01e-20 | 54 |
central nervous system | 1.11e-19 | 73 |
nervous system | 4.60e-19 | 75 |
neural tube | 9.25e-19 | 52 |
neural rod | 9.25e-19 | 52 |
future spinal cord | 9.25e-19 | 52 |
neural keel | 9.25e-19 | 52 |
ecto-epithelium | 1.66e-17 | 73 |
ectoderm-derived structure | 1.57e-16 | 95 |
ectoderm | 1.57e-16 | 95 |
presumptive ectoderm | 1.57e-16 | 95 |
pre-chordal neural plate | 2.09e-16 | 49 |
brain | 1.51e-15 | 47 |
future brain | 1.51e-15 | 47 |
regional part of brain | 1.55e-15 | 46 |
anterior neural tube | 4.91e-15 | 40 |
regional part of forebrain | 1.18e-14 | 39 |
forebrain | 1.18e-14 | 39 |
future forebrain | 1.18e-14 | 39 |
gray matter | 5.32e-12 | 34 |
brain grey matter | 1.28e-09 | 29 |
regional part of telencephalon | 1.28e-09 | 29 |
telencephalon | 1.28e-09 | 29 |
tube | 8.74e-07 | 114 |