FFCP PHASE1:Mm9::chr9:40263737..40263761,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=235283|HGNC=|MCL_coexpression_id=2493|UniProt=Q80TI0|association_with_transcript=-388bp_to_ENSMUST00000045682,NM_172768,uc009ozq.1_5end|description=CAGE_peak_3_at_Gramd1b_5end|id=chr9:40263737..40263761,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000893,4.31e-09,6;CL:0002489,4.31e-09,6;CL:0000898,4.31e-09,6;CL:0000809,4.31e-09,6;CL:0000810,4.31e-09,6;CL:0000895,4.31e-09,6;CL:0000808,4.31e-09,6;CL:0000894,4.31e-09,6;CL:0000806,4.31e-09,6;CL:0000807,4.31e-09,6;CL:0000805,4.31e-09,6;CL:0002425,4.31e-09,6;CL:0002436,4.31e-09,6;CL:0002427,4.31e-09,6;CL:0002428,4.31e-09,6;CL:0002429,4.31e-09,6;CL:0002433,4.31e-09,6;CL:0002431,4.31e-09,6;CL:0002432,4.31e-09,6;CL:0000624,1.17e-08,8;CL:0000791,1.57e-07,9;CL:0000789,1.57e-07,9;CL:0002420,1.57e-07,9;CL:0002419,1.57e-07,9;CL:0000790,1.57e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000991!2.58e-09!18;UBERON:0005564!2.58e-09!18;UBERON:0004176!9.96e-09!17;UBERON:0009196!9.96e-09!17;UBERON:0009117!9.96e-09!17;UBERON:0003135!3.39e-08!15;UBERON:0000473!5.16e-08!14;UBERON:0003101!3.52e-07!16;UBERON:0000079!3.52e-07!16;UBERON:0003133!3.80e-07!24;UBERON:0005156!8.96e-07!26;UBERON:0000990!8.96e-07!26|ontology_enrichment_uberon_v019_2=UBERON:0000926,2.27e-14,120;UBERON:0004120,2.27e-14,120;UBERON:0006603,2.27e-14,120;UBERON:0000991,5.95e-12,18;UBERON:0005564,5.95e-12,18;UBERON:0000473,1.67e-11,14;UBERON:0002369,2.28e-11,7;UBERON:0006858,2.28e-11,7;UBERON:0004176,7.34e-11,17;UBERON:0009196,7.34e-11,17;UBERON:0009117,7.34e-11,17;UBERON:0003135,1.57e-10,15;UBERON:0007100,1.92e-10,18;UBERON:0000948,1.92e-10,18;UBERON:0005498,1.92e-10,18;UBERON:0004140,1.92e-10,18;UBERON:0009881,1.92e-10,18;UBERON:0004141,1.92e-10,18;UBERON:0003084,1.92e-10,18;UBERON:0007005,1.92e-10,18;UBERON:0004139,1.92e-10,18;UBERON:0004291,1.92e-10,18;UBERON:0003101,1.11e-09,16;UBERON:0000079,1.11e-09,16;UBERON:0003133,4.96e-08,24;UBERON:0004535,1.97e-07,23;UBERON:0001009,1.97e-07,23;UBERON:0005156,3.85e-07,26;UBERON:0000990,3.85e-07,26;UBERON:0002368,4.16e-07,60;UBERON:0010314,9.34e-07,92|phase1_expression=0,1.74487703819681,0,1.20985684522732,1.00179145989269,0.16787927191189,0.233612640595526,1.80772652818207,37.0274339258884,51.2601312645166,33.216285835748,24.6495971295589,1.54080656938085,1.48614684112296,0.666219523631325,0.404950534779652,0,0.157731082679119,0.137114433605739,0,0.680346321208558,0.0992909512008853,0.261199789138935,0,0,0,0,0.215471232685889,0.190023419456374,0,0,0,0,0,0,0.166234645358492,0.204169356262369,2.51118978442145,0,1.57057123192139,1.17646297606203,3.41522742479223,1.45653105909346,0,0.202753862439029,0,0.782391344348039,0,0.219686182734472,0,0,0,0,0,0.336093799142464,0,0.286533439938757,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0.518448061542388,0.270011876663381,0,0,0,0.61245399607477,0.0958454710182364,0,0,0,0.153606533256243,0.791317726381163,0.182975287204819,0,0,0.56276261003168,0.30559649555362,0,0,0,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0.258937883647172,29.2431013957705,9.02123699183906,34.404599049272,26.0595511899346,24.5677904100775,47.0354828542819,28.7776494144957,0,0.289198713839823,0,0,0.220841518460394,0,0,1.17112318804619,1.25668024088073,0,0,0,0.127070227073065,0.149790639404823,0,0.502617408451458,0.173824320192276,0.255715457330331,0.20778804455956,0.811206315338788,0.509196819251581,0.248813941220186,0.758168275301024,0.420883711772948,0.260240885925407,0,0.540186389416048,0,0.272145996605311,0.12811372028485,0.187403449119458,0.517406741478031,0,0.378212160335639,0.175951124163949,0,0.556094498451196,0.696504333044333,0,2.58744546864041,0,0,0,2.07125772535502,1.40715635988658,1.80062061461015,1.18372367792605,2.16440654922144,1.07986979021165,1.62773761325285,1.3413670069981,2.21854150497622,1.15191894939436,0.32833492815819,2.26992666728396,1.90059983652932,1.09775057645525,1.61047702512446,0.210289948564127,1.02904612379284,0,0,0.213288250535234,0.464473343720877,0,0,0,0,0,0.164698954724011,0,0,0.19496408711912,0.898819408654221,0,0.199141273254367,0.189667900953082,2.28497025219458,1.1270773567308,0.203651327845314,0.193952487167626,0.561086559122548,0.442655759869801,0.442830443938806,0.31399745568275,0.740382983530803,0,0,0.393117990226406,0,0,0,0.25462585178142,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.189491411770485,0,0.169745085775188,0.938760993154008,0.335012514883631,0.952174563544055,0.390267295715598,0.157635144106191,0.44292937929755,0.159454768657487,0.655453258862952,0.690739927463582,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0,18.8780313326997,0.534196811001766,0.488660878060728,0.989820737835213,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,1.44048875225048,1.68166288917581,1.28602221018955,1.41872186913819,1.07021290561242,0.658196082408484,1.8267896946876,0.938686832254841,0,0,0.49465875882444,0,0.120625849856312,0.119372344003136,0.164140899745061,0,0.18542530201051,0.170870880797853,0,0,0,0.27338845544205,0.457556346413045,0.169978429993855,0,0,0.954670618015114,0.158167996790568,0,0.216010681643603,0.209088296014469,0.218362563746178,0.134864346384821,0.247960367176008,0.523511883968059,0.129614973291793,0,2.81846469342095,14.6526215123099,13.4021377270249,16.7228021975881,14.0784207590727,18.247261553004,23.1193760132135,13.020438484395,10.6956531314225,2.41584120826006,4.89651010638371,0.948033361884535,0.405450430580328,0,0.129920822977795,0,0.39736270956253,1.08175904567972,1.03382669022204,0.706765149637033,0.914481679859998,1.10908803650525,1.55932609183604,0.865906574762965,1.75315353272353,0.453460767230423,0,0.179427713218951,0,0.19318959403219,0,0.36630324853453,0,0.501572104035363,1.12950368523413,0,1.14579102687879,0.859265911718438,0.685082519770642,0.755393897389701,0.675022500231806,0.45032120322422,0.453142408984205,2.07104124700728,0.207574695168353,0.798049746802062,0.853668028770671,0.243106717068294,0,0,1.77797382241292,0.206035057238894,0.962757628775446,0,0,0.943131706930381,0.561849044819294,0.256100609619477,0.459483751644906,0,0.695305955669133,0.192909220463705,0.824171801606613,0.294397840268795,0.342869252385415,0.354951612318675,0.476872379894642,0.290692833264657,0.376437521661322,0.592302255241736,0,0,0.407412341537585,0.561142271657738,0.237270036248348,0.394017929502254,0.818462086339379,0.309873682371932,1.35034627686799,0.999242311751784,0.233931608445408,1.50409737833809,0.57386499620653,0.661774257358546,0|short_description=p3@Gramd1b}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=235283 | |||
|HGNC= | |||
|MCL_coexpression_id=2493 | |||
|TSSclassifier=NA | |||
|UniProt=Q80TI0 | |||
|association_with_transcript=-388bp_to_ENSMUST00000045682,NM_172768,uc009ozq.1_5end | |||
|cluster_id=chr9:40263737..40263761,- | |||
|description=CAGE_peak_3_at_Gramd1b_5end | |||
|id=chr9:40263737..40263761,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000893,4.31e-09,6;CL:0002489,4.31e-09,6;CL:0000898,4.31e-09,6;CL:0000809,4.31e-09,6;CL:0000810,4.31e-09,6;CL:0000895,4.31e-09,6;CL:0000808,4.31e-09,6;CL:0000894,4.31e-09,6;CL:0000806,4.31e-09,6;CL:0000807,4.31e-09,6;CL:0000805,4.31e-09,6;CL:0002425,4.31e-09,6;CL:0002436,4.31e-09,6;CL:0002427,4.31e-09,6;CL:0002428,4.31e-09,6;CL:0002429,4.31e-09,6;CL:0002433,4.31e-09,6;CL:0002431,4.31e-09,6;CL:0002432,4.31e-09,6;CL:0000624,1.17e-08,8;CL:0000791,1.57e-07,9;CL:0000789,1.57e-07,9;CL:0002420,1.57e-07,9;CL:0002419,1.57e-07,9;CL:0000790,1.57e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000991!2.58e-09!18;UBERON:0005564!2.58e-09!18;UBERON:0004176!9.96e-09!17;UBERON:0009196!9.96e-09!17;UBERON:0009117!9.96e-09!17;UBERON:0003135!3.39e-08!15;UBERON:0000473!5.16e-08!14;UBERON:0003101!3.52e-07!16;UBERON:0000079!3.52e-07!16;UBERON:0003133!3.80e-07!24;UBERON:0005156!8.96e-07!26;UBERON:0000990!8.96e-07!26 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,2.27e-14,120;UBERON:0004120,2.27e-14,120;UBERON:0006603,2.27e-14,120;UBERON:0000991,5.95e-12,18;UBERON:0005564,5.95e-12,18;UBERON:0000473,1.67e-11,14;UBERON:0002369,2.28e-11,7;UBERON:0006858,2.28e-11,7;UBERON:0004176,7.34e-11,17;UBERON:0009196,7.34e-11,17;UBERON:0009117,7.34e-11,17;UBERON:0003135,1.57e-10,15;UBERON:0007100,1.92e-10,18;UBERON:0000948,1.92e-10,18;UBERON:0005498,1.92e-10,18;UBERON:0004140,1.92e-10,18;UBERON:0009881,1.92e-10,18;UBERON:0004141,1.92e-10,18;UBERON:0003084,1.92e-10,18;UBERON:0007005,1.92e-10,18;UBERON:0004139,1.92e-10,18;UBERON:0004291,1.92e-10,18;UBERON:0003101,1.11e-09,16;UBERON:0000079,1.11e-09,16;UBERON:0003133,4.96e-08,24;UBERON:0004535,1.97e-07,23;UBERON:0001009,1.97e-07,23;UBERON:0005156,3.85e-07,26;UBERON:0000990,3.85e-07,26;UBERON:0002368,4.16e-07,60;UBERON:0010314,9.34e-07,92 | |||
|phase1_expression=0,1.74487703819681,0,1.20985684522732,1.00179145989269,0.16787927191189,0.233612640595526,1.80772652818207,37.0274339258884,51.2601312645166,33.216285835748,24.6495971295589,1.54080656938085,1.48614684112296,0.666219523631325,0.404950534779652,0,0.157731082679119,0.137114433605739,0,0.680346321208558,0.0992909512008853,0.261199789138935,0,0,0,0,0.215471232685889,0.190023419456374,0,0,0,0,0,0,0.166234645358492,0.204169356262369,2.51118978442145,0,1.57057123192139,1.17646297606203,3.41522742479223,1.45653105909346,0,0.202753862439029,0,0.782391344348039,0,0.219686182734472,0,0,0,0,0,0.336093799142464,0,0.286533439938757,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0.518448061542388,0.270011876663381,0,0,0,0.61245399607477,0.0958454710182364,0,0,0,0.153606533256243,0.791317726381163,0.182975287204819,0,0,0.56276261003168,0.30559649555362,0,0,0,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0.258937883647172,29.2431013957705,9.02123699183906,34.404599049272,26.0595511899346,24.5677904100775,47.0354828542819,28.7776494144957,0,0.289198713839823,0,0,0.220841518460394,0,0,1.17112318804619,1.25668024088073,0,0,0,0.127070227073065,0.149790639404823,0,0.502617408451458,0.173824320192276,0.255715457330331,0.20778804455956,0.811206315338788,0.509196819251581,0.248813941220186,0.758168275301024,0.420883711772948,0.260240885925407,0,0.540186389416048,0,0.272145996605311,0.12811372028485,0.187403449119458,0.517406741478031,0,0.378212160335639,0.175951124163949,0,0.556094498451196,0.696504333044333,0,2.58744546864041,0,0,0,2.07125772535502,1.40715635988658,1.80062061461015,1.18372367792605,2.16440654922144,1.07986979021165,1.62773761325285,1.3413670069981,2.21854150497622,1.15191894939436,0.32833492815819,2.26992666728396,1.90059983652932,1.09775057645525,1.61047702512446,0.210289948564127,1.02904612379284,0,0,0.213288250535234,0.464473343720877,0,0,0,0,0,0.164698954724011,0,0,0.19496408711912,0.898819408654221,0,0.199141273254367,0.189667900953082,2.28497025219458,1.1270773567308,0.203651327845314,0.193952487167626,0.561086559122548,0.442655759869801,0.442830443938806,0.31399745568275,0.740382983530803,0,0,0.393117990226406,0,0,0,0.25462585178142,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.189491411770485,0,0.169745085775188,0.938760993154008,0.335012514883631,0.952174563544055,0.390267295715598,0.157635144106191,0.44292937929755,0.159454768657487,0.655453258862952,0.690739927463582,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0,18.8780313326997,0.534196811001766,0.488660878060728,0.989820737835213,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,1.44048875225048,1.68166288917581,1.28602221018955,1.41872186913819,1.07021290561242,0.658196082408484,1.8267896946876,0.938686832254841,0,0,0.49465875882444,0,0.120625849856312,0.119372344003136,0.164140899745061,0,0.18542530201051,0.170870880797853,0,0,0,0.27338845544205,0.457556346413045,0.169978429993855,0,0,0.954670618015114,0.158167996790568,0,0.216010681643603,0.209088296014469,0.218362563746178,0.134864346384821,0.247960367176008,0.523511883968059,0.129614973291793,0,2.81846469342095,14.6526215123099,13.4021377270249,16.7228021975881,14.0784207590727,18.247261553004,23.1193760132135,13.020438484395,10.6956531314225,2.41584120826006,4.89651010638371,0.948033361884535,0.405450430580328,0,0.129920822977795,0,0.39736270956253,1.08175904567972,1.03382669022204,0.706765149637033,0.914481679859998,1.10908803650525,1.55932609183604,0.865906574762965,1.75315353272353,0.453460767230423,0,0.179427713218951,0,0.19318959403219,0,0.36630324853453,0,0.501572104035363,1.12950368523413,0,1.14579102687879,0.859265911718438,0.685082519770642,0.755393897389701,0.675022500231806,0.45032120322422,0.453142408984205,2.07104124700728,0.207574695168353,0.798049746802062,0.853668028770671,0.243106717068294,0,0,1.77797382241292,0.206035057238894,0.962757628775446,0,0,0.943131706930381,0.561849044819294,0.256100609619477,0.459483751644906,0,0.695305955669133,0.192909220463705,0.824171801606613,0.294397840268795,0.342869252385415,0.354951612318675,0.476872379894642,0.290692833264657,0.376437521661322,0.592302255241736,0,0,0.407412341537585,0.561142271657738,0.237270036248348,0.394017929502254,0.818462086339379,0.309873682371932,1.35034627686799,0.999242311751784,0.233931608445408,1.50409737833809,0.57386499620653,0.661774257358546,0 | |||
|short_description=p3@Gramd1b | |||
}} |
Latest revision as of 15:18, 26 September 2015
Short description: | p3@Gramd1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gramd1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:2493 |
Association with transcript: | -388bp_to_ENSMUST00000045682, NM_172768, uc009ozq.1_5end |
EntrezGene: | Gramd1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymocyte | 4.31e-09 | 6 |
double negative thymocyte | 4.31e-09 | 6 |
naive T cell | 4.31e-09 | 6 |
double-positive, alpha-beta thymocyte | 4.31e-09 | 6 |
CD4-positive, alpha-beta thymocyte | 4.31e-09 | 6 |
naive thymus-derived CD4-positive, alpha-beta T cell | 4.31e-09 | 6 |
DN4 thymocyte | 4.31e-09 | 6 |
DN1 thymic pro-T cell | 4.31e-09 | 6 |
DN2 thymocyte | 4.31e-09 | 6 |
DN3 thymocyte | 4.31e-09 | 6 |
immature single positive thymocyte | 4.31e-09 | 6 |
early T lineage precursor | 4.31e-09 | 6 |
mature CD4 single-positive thymocyte | 4.31e-09 | 6 |
resting double-positive thymocyte | 4.31e-09 | 6 |
double-positive blast | 4.31e-09 | 6 |
CD69-positive double-positive thymocyte | 4.31e-09 | 6 |
CD69-positive, CD4-positive single-positive thymocyte | 4.31e-09 | 6 |
CD4-positive, CD8-intermediate double-positive thymocyte | 4.31e-09 | 6 |
CD24-positive, CD4 single-positive thymocyte | 4.31e-09 | 6 |
CD4-positive, alpha-beta T cell | 1.17e-08 | 8 |
mature alpha-beta T cell | 1.57e-07 | 9 |
alpha-beta T cell | 1.57e-07 | 9 |
immature T cell | 1.57e-07 | 9 |
mature T cell | 1.57e-07 | 9 |
immature alpha-beta T cell | 1.57e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 2.27e-14 | 120 |
mesoderm-derived structure | 2.27e-14 | 120 |
presumptive mesoderm | 2.27e-14 | 120 |
gonad | 5.95e-12 | 18 |
gonad primordium | 5.95e-12 | 18 |
testis | 1.67e-11 | 14 |
adrenal gland | 2.28e-11 | 7 |
adrenal/interrenal gland | 2.28e-11 | 7 |
external genitalia | 7.34e-11 | 17 |
indifferent external genitalia | 7.34e-11 | 17 |
indifferent gonad | 7.34e-11 | 17 |
male reproductive organ | 1.57e-10 | 15 |
primary circulatory organ | 1.92e-10 | 18 |
heart | 1.92e-10 | 18 |
primitive heart tube | 1.92e-10 | 18 |
primary heart field | 1.92e-10 | 18 |
anterior lateral plate mesoderm | 1.92e-10 | 18 |
heart tube | 1.92e-10 | 18 |
heart primordium | 1.92e-10 | 18 |
cardiac mesoderm | 1.92e-10 | 18 |
cardiogenic plate | 1.92e-10 | 18 |
heart rudiment | 1.92e-10 | 18 |
male organism | 1.11e-09 | 16 |
male reproductive system | 1.11e-09 | 16 |
reproductive organ | 4.96e-08 | 24 |
cardiovascular system | 1.97e-07 | 23 |
circulatory system | 1.97e-07 | 23 |
reproductive structure | 3.85e-07 | 26 |
reproductive system | 3.85e-07 | 26 |
endocrine gland | 4.16e-07 | 60 |
structure with developmental contribution from neural crest | 9.34e-07 | 92 |