FFCP PHASE1:Mm9::chr8:89996682..89996693,+: Difference between revisions
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{{FFCP|EntrezGene=100040294|HGNC=|MCL_coexpression_id=42|UniProt=|association_with_transcript=-17bp_to_ENSMUST00000123808,ENSMUST00000146810,NR_033430,uc009mqs.1_5end|description=CAGE_peak_3_at_Gm2694_5end|id=chr8:89996682..89996693,+|ontology_enrichment_celltype=CL:0000117!1.08e-16!23;CL:0000337!1.08e-16!23;CL:0000221!1.29e-13!44;CL:0000133!1.29e-13!44;CL:0000540!5.17e-13!33;CL:0000047!5.17e-13!33;CL:0000031!5.17e-13!33;CL:0000404!5.17e-13!33;CL:0002319!8.60e-13!43;CL:0000393!9.10e-10!39;CL:0000211!9.10e-10!39;CL:0000055!1.08e-09!50;CL:0002609!6.08e-07!6|ontology_enrichment_celltype_v019_2=CL:0000117,5.94e-13,23;CL:0000337,5.94e-13,23;CL:0000540,1.44e-11,33;CL:0000047,1.44e-11,33;CL:0000031,1.44e-11,33;CL:0000404,1.44e-11,33;CL:0002319,5.24e-11,43;CL:0000221,9.81e-11,44;CL:0000133,9.81e-11,44;CL:0000393,1.14e-09,39;CL:0000211,1.14e-09,39;CL:0000120,1.21e-09,3;CL:0002374,8.50e-08,1;CL:0000202,8.50e-08,1;CL:0000199,8.50e-08,1;CL:0000855,8.50e-08,1;CL:0000589,8.50e-08,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.86e-20!75;UBERON:0001016!4.86e-20!75;UBERON:0001017!2.59e-19!73;UBERON:0005743!2.59e-19!73;UBERON:0004121!4.68e-17!102;UBERON:0000924!4.68e-17!102;UBERON:0006601!4.68e-17!102;UBERON:0000033!8.85e-16!63;UBERON:0000955!5.86e-14!50;UBERON:0006238!5.86e-14!50;UBERON:0001049!1.09e-13!52;UBERON:0005068!1.09e-13!52;UBERON:0006241!1.09e-13!52;UBERON:0007135!1.09e-13!52;UBERON:0002616!3.36e-13!49;UBERON:0002346!1.22e-11!71;UBERON:0003075!1.22e-11!71;UBERON:0007284!1.22e-11!71;UBERON:0003056!1.32e-10!49;UBERON:0003080!1.44e-09!40;UBERON:0001894!3.29e-09!10;UBERON:0006222!3.29e-09!10;UBERON:0002780!4.41e-09!39;UBERON:0001890!4.41e-09!39;UBERON:0006240!4.41e-09!39;UBERON:0000007!1.55e-08!8;UBERON:0003296!1.55e-08!8;UBERON:0010133!1.55e-08!8;UBERON:0007811!3.23e-08!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.59e-13,73;UBERON:0001016,6.38e-13,75;UBERON:0004121,6.75e-10,95;UBERON:0000924,6.75e-10,95;UBERON:0006601,6.75e-10,95;UBERON:0000073,1.71e-08,54;UBERON:0002037,1.43e-07,4;UBERON:0002680,1.43e-07,4;UBERON:0001895,1.43e-07,4;UBERON:0010092,1.43e-07,4;UBERON:0006215,1.43e-07,4;UBERON:0001049,5.08e-07,52;UBERON:0005068,5.08e-07,52;UBERON:0006241,5.08e-07,52;UBERON:0007135,5.08e-07,52|phase1_expression=1.60148847104794,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,0.765389611359628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43752564364972,0,0,0,0,0,0,2.22548106945558,1.5869729378161,0.633831403506179,0,0,0,0,0,0.299600110518405,0.384218305321555,0.518448061542388,0.540023753326763,0.841299845405528,0.571301968807607,0.220868540951614,0.61245399607477,0.575072826109418,2.75765635983006,1.10115880999389,0.510749352340751,0.307213066512487,0.131886287730194,0.548925861614458,1.56274011167028,1.11673199600552,0,0.61119299110724,0,0.142371680799103,1.3047961207771,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.985903938436763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0.485300549842228,0,0,0,1.75668478206928,5.86450779077674,0,0,0,0,0.299581278809645,0,0.125654352112864,0.173824320192276,0.255715457330331,0.20778804455956,0.162241263067758,0,0,0,0,0,0,0.180062129805349,0.452114453507145,0.476255494059295,0.512454881139399,0.281105173679186,0,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0.219550115291051,0,0,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0.123397163921801,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0,0,0,0,0.222798674082394,0.283076530788832,0,0,0,0.642642632843614,0,0.35613120733451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02131881726136,0.36012218806262,0.388076051348264,0.643011105094777,0.886701168211368,0.891844088010353,0.822745103010605,1.2178597964584,0,0,0,0,0.161464426695906,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0.496375471371293,0.388902376688095,0.387479470433193,0.506868376472335,0.352071715937262,0.911430693907651,0.419437377702843,0,1.44015003128933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448569283047378,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.798049746802062,0.512200817262403,0,0,0.183843508450014,0,0,0.320919209591815,0.252697211763798,0,0,0.0936415074698824,0.0640251524048693,0.402048282689293,0,0.115884325944855,0.38581844092741,0.412085900803307,0,0.342869252385415,0,0.476872379894642,0,0.282328141245992,0.169229215783353,0.365855945745545,0,0.271608227691724,0,0,0,0.409231043169689,0.309873682371932,0,0,0,0.214871054048298,0,0,0|short_description=p3@Gm2694}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100040294 | |||
|HGNC= | |||
|MCL_coexpression_id=42 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-17bp_to_ENSMUST00000123808,ENSMUST00000146810,NR_033430,uc009mqs.1_5end | |||
|cluster_id=chr8:89996682..89996693,+ | |||
|description=CAGE_peak_3_at_Gm2694_5end | |||
|id=chr8:89996682..89996693,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.08e-16!23;CL:0000337!1.08e-16!23;CL:0000221!1.29e-13!44;CL:0000133!1.29e-13!44;CL:0000540!5.17e-13!33;CL:0000047!5.17e-13!33;CL:0000031!5.17e-13!33;CL:0000404!5.17e-13!33;CL:0002319!8.60e-13!43;CL:0000393!9.10e-10!39;CL:0000211!9.10e-10!39;CL:0000055!1.08e-09!50;CL:0002609!6.08e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.94e-13,23;CL:0000337,5.94e-13,23;CL:0000540,1.44e-11,33;CL:0000047,1.44e-11,33;CL:0000031,1.44e-11,33;CL:0000404,1.44e-11,33;CL:0002319,5.24e-11,43;CL:0000221,9.81e-11,44;CL:0000133,9.81e-11,44;CL:0000393,1.14e-09,39;CL:0000211,1.14e-09,39;CL:0000120,1.21e-09,3;CL:0002374,8.50e-08,1;CL:0000202,8.50e-08,1;CL:0000199,8.50e-08,1;CL:0000855,8.50e-08,1;CL:0000589,8.50e-08,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.86e-20!75;UBERON:0001016!4.86e-20!75;UBERON:0001017!2.59e-19!73;UBERON:0005743!2.59e-19!73;UBERON:0004121!4.68e-17!102;UBERON:0000924!4.68e-17!102;UBERON:0006601!4.68e-17!102;UBERON:0000033!8.85e-16!63;UBERON:0000955!5.86e-14!50;UBERON:0006238!5.86e-14!50;UBERON:0001049!1.09e-13!52;UBERON:0005068!1.09e-13!52;UBERON:0006241!1.09e-13!52;UBERON:0007135!1.09e-13!52;UBERON:0002616!3.36e-13!49;UBERON:0002346!1.22e-11!71;UBERON:0003075!1.22e-11!71;UBERON:0007284!1.22e-11!71;UBERON:0003056!1.32e-10!49;UBERON:0003080!1.44e-09!40;UBERON:0001894!3.29e-09!10;UBERON:0006222!3.29e-09!10;UBERON:0002780!4.41e-09!39;UBERON:0001890!4.41e-09!39;UBERON:0006240!4.41e-09!39;UBERON:0000007!1.55e-08!8;UBERON:0003296!1.55e-08!8;UBERON:0010133!1.55e-08!8;UBERON:0007811!3.23e-08!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.59e-13,73;UBERON:0001016,6.38e-13,75;UBERON:0004121,6.75e-10,95;UBERON:0000924,6.75e-10,95;UBERON:0006601,6.75e-10,95;UBERON:0000073,1.71e-08,54;UBERON:0002037,1.43e-07,4;UBERON:0002680,1.43e-07,4;UBERON:0001895,1.43e-07,4;UBERON:0010092,1.43e-07,4;UBERON:0006215,1.43e-07,4;UBERON:0001049,5.08e-07,52;UBERON:0005068,5.08e-07,52;UBERON:0006241,5.08e-07,52;UBERON:0007135,5.08e-07,52 | |||
|phase1_expression=1.60148847104794,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,0.765389611359628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43752564364972,0,0,0,0,0,0,2.22548106945558,1.5869729378161,0.633831403506179,0,0,0,0,0,0.299600110518405,0.384218305321555,0.518448061542388,0.540023753326763,0.841299845405528,0.571301968807607,0.220868540951614,0.61245399607477,0.575072826109418,2.75765635983006,1.10115880999389,0.510749352340751,0.307213066512487,0.131886287730194,0.548925861614458,1.56274011167028,1.11673199600552,0,0.61119299110724,0,0.142371680799103,1.3047961207771,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.985903938436763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0.485300549842228,0,0,0,1.75668478206928,5.86450779077674,0,0,0,0,0.299581278809645,0,0.125654352112864,0.173824320192276,0.255715457330331,0.20778804455956,0.162241263067758,0,0,0,0,0,0,0.180062129805349,0.452114453507145,0.476255494059295,0.512454881139399,0.281105173679186,0,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0.219550115291051,0,0,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0.123397163921801,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0,0,0,0,0.222798674082394,0.283076530788832,0,0,0,0.642642632843614,0,0.35613120733451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02131881726136,0.36012218806262,0.388076051348264,0.643011105094777,0.886701168211368,0.891844088010353,0.822745103010605,1.2178597964584,0,0,0,0,0.161464426695906,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0.496375471371293,0.388902376688095,0.387479470433193,0.506868376472335,0.352071715937262,0.911430693907651,0.419437377702843,0,1.44015003128933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448569283047378,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.798049746802062,0.512200817262403,0,0,0.183843508450014,0,0,0.320919209591815,0.252697211763798,0,0,0.0936415074698824,0.0640251524048693,0.402048282689293,0,0.115884325944855,0.38581844092741,0.412085900803307,0,0.342869252385415,0,0.476872379894642,0,0.282328141245992,0.169229215783353,0.365855945745545,0,0.271608227691724,0,0,0,0.409231043169689,0.309873682371932,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p3@Gm2694 | |||
}} |
Latest revision as of 23:00, 25 September 2015
Short description: | p3@Gm2694 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gm2694_5end |
Coexpression cluster: | MCL_coexpression_mm9:42 |
Association with transcript: | -17bp_to_ENSMUST00000123808, ENSMUST00000146810, NR_033430, uc009mqs.1_5end |
EntrezGene: | Gm2694 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.94e-13 | 23 |
neuroblast (sensu Vertebrata) | 5.94e-13 | 23 |
neuron | 1.44e-11 | 33 |
neuronal stem cell | 1.44e-11 | 33 |
neuroblast | 1.44e-11 | 33 |
electrically signaling cell | 1.44e-11 | 33 |
neural cell | 5.24e-11 | 43 |
ectodermal cell | 9.81e-11 | 44 |
neurectodermal cell | 9.81e-11 | 44 |
electrically responsive cell | 1.14e-09 | 39 |
electrically active cell | 1.14e-09 | 39 |
granule cell | 1.21e-09 | 3 |
ear hair cell | 8.50e-08 | 1 |
auditory hair cell | 8.50e-08 | 1 |
mechanoreceptor cell | 8.50e-08 | 1 |
sensory hair cell | 8.50e-08 | 1 |
cochlear inner hair cell | 8.50e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.59e-13 | 73 |
nervous system | 6.38e-13 | 75 |
ectoderm-derived structure | 6.75e-10 | 95 |
ectoderm | 6.75e-10 | 95 |
presumptive ectoderm | 6.75e-10 | 95 |
regional part of nervous system | 1.71e-08 | 54 |
cerebellum | 1.43e-07 | 4 |
regional part of metencephalon | 1.43e-07 | 4 |
metencephalon | 1.43e-07 | 4 |
future metencephalon | 1.43e-07 | 4 |
rhombic lip | 1.43e-07 | 4 |
neural tube | 5.08e-07 | 52 |
neural rod | 5.08e-07 | 52 |
future spinal cord | 5.08e-07 | 52 |
neural keel | 5.08e-07 | 52 |