FFCP PHASE1:Mm9::chr8:85689347..85689398,+: Difference between revisions
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{{FFCP|EntrezGene=71310|HGNC=|MCL_coexpression_id=13|UniProt=Q3UYK3,E9Q645|association_with_transcript=96bp_to_ENSMUST00000034145,ENSMUST00000168190,NM_001111304,NM_027758,uc009mju.2,uc009mjv.2_5end|description=CAGE_peak_1_at_Tbc1d9_5end|id=chr8:85689347..85689398,+|ontology_enrichment_celltype=CL:0000117!2.31e-14!23;CL:0000337!2.31e-14!23;CL:0000540!1.13e-10!33;CL:0000047!1.13e-10!33;CL:0000031!1.13e-10!33;CL:0000404!1.13e-10!33;CL:0000393!3.74e-08!39;CL:0000211!3.74e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.68e-14,23;CL:0000337,1.68e-14,23;CL:0000540,1.25e-10,33;CL:0000047,1.25e-10,33;CL:0000031,1.25e-10,33;CL:0000404,1.25e-10,33;CL:0000393,5.68e-08,39;CL:0000211,5.68e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!9.43e-19!52;UBERON:0005068!9.43e-19!52;UBERON:0006241!9.43e-19!52;UBERON:0007135!9.43e-19!52;UBERON:0000033!2.05e-18!63;UBERON:0001017!4.33e-18!73;UBERON:0005743!4.33e-18!73;UBERON:0000955!1.54e-17!50;UBERON:0006238!1.54e-17!50;UBERON:0002020!2.96e-17!34;UBERON:0000073!3.94e-17!75;UBERON:0001016!3.94e-17!75;UBERON:0002616!5.49e-17!49;UBERON:0002346!1.69e-15!71;UBERON:0003075!1.69e-15!71;UBERON:0007284!1.69e-15!71;UBERON:0003056!3.96e-15!49;UBERON:0003080!2.33e-14!40;UBERON:0002791!3.35e-14!29;UBERON:0003528!3.35e-14!29;UBERON:0001893!3.35e-14!29;UBERON:0004121!5.92e-14!102;UBERON:0000924!5.92e-14!102;UBERON:0006601!5.92e-14!102;UBERON:0002780!7.58e-14!39;UBERON:0001890!7.58e-14!39;UBERON:0006240!7.58e-14!39;UBERON:0000956!1.05e-09!21;UBERON:0001869!1.05e-09!21;UBERON:0000203!1.05e-09!21;UBERON:0002619!6.41e-08!17;UBERON:0002021!2.94e-07!10;UBERON:0000411!2.94e-07!10;UBERON:0001950!2.94e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.05e-20,54;UBERON:0001049,4.49e-19,52;UBERON:0005068,4.49e-19,52;UBERON:0006241,4.49e-19,52;UBERON:0007135,4.49e-19,52;UBERON:0002346,5.64e-19,64;UBERON:0003075,5.64e-19,64;UBERON:0007284,5.64e-19,64;UBERON:0001017,4.81e-18,73;UBERON:0002020,2.00e-17,34;UBERON:0001016,5.26e-17,75;UBERON:0010371,7.95e-17,73;UBERON:0000955,5.53e-16,47;UBERON:0006238,5.53e-16,47;UBERON:0004121,6.40e-16,95;UBERON:0000924,6.40e-16,95;UBERON:0006601,6.40e-16,95;UBERON:0002616,1.94e-15,46;UBERON:0003056,2.83e-15,49;UBERON:0003080,1.70e-14,40;UBERON:0003528,2.45e-14,29;UBERON:0002791,2.45e-14,29;UBERON:0001893,2.45e-14,29;UBERON:0002780,5.59e-14,39;UBERON:0001890,5.59e-14,39;UBERON:0006240,5.59e-14,39;UBERON:0000956,8.61e-10,21;UBERON:0001869,8.61e-10,21;UBERON:0000203,8.61e-10,21;UBERON:0010314,8.32e-09,92;UBERON:0002619,5.47e-08,17;UBERON:0002021,2.55e-07,10;UBERON:0000411,2.55e-07,10;UBERON:0001950,2.55e-07,10|phase1_expression=5.12476310735341,9.07336059862339,11.3749809847384,11.1911758183527,11.520601788766,6.21153306073992,7.70921713965235,0,0,0,0,0,0,0,0.333109761815663,1.82227740650843,2.09868563438444,1.73504190947031,2.4680598049033,3.39511721438424,3.14660173558958,0,0,3.83981814704176,4.81759490241057,9.76194338995534,4.30761996159075,2.80112602491656,4.75058548640935,3.78045194639896,3.99114919179548,0,0,0,6.06588401477677,1.32987716286794,4.28755648150975,1.25559489221072,0.7813353445238,0.523523743973798,0,0,0,1.6366586336825,3.34543873024398,1.83546752161682,0,1.74420125104357,1.31811709640683,1.74986909166855,0.55994568650145,1.43752564364972,0.671130424230945,0,0,1.54355661621568,0.85960031981627,0.515672092277442,25.6941905291689,37.0293685490423,27.2547503507657,0,0,1.3498495759221,5.93319817540185,2.8419204597844,0.898800331555214,1.15265491596466,10.7837196800817,12.1505344498522,11.9885227970288,19.1386159550548,14.7981922437581,11.1466627285608,8.14686503655009,18.3843757322004,28.6301290598411,17.6208526557559,20.1224558565679,27.6961204233407,24.5186884854458,23.4411016750542,19.821992929098,14.6318278608237,19.2525792198781,22.0971439105251,23.2065839702538,24.9775257405903,1.8931548333296,0.604572480854284,5.50742528533188,0,0,0,0,0,1.68533304158102,0.170430322578058,0.259786004602869,0,7.32385782838739,0,0,0,3.89683873820185,2.02687892380079,2.52762222507392,1.82694207550496,0.517875767294343,3.56261133755579,1.21439728736295,1.21786191324856,1.61430848079241,0.753613202763113,1.99900802130698,0.376999773989026,2.47194967734374,1.15679485535929,1.76922110389975,1.29413479957927,0.441683036920787,0,1.86391761218122,31.6203260772471,26.1808383516819,2.55457055208591,1.55759661857696,1.19980546198682,1.65191295194984,14.8292733010774,8.23501085073528,17.9685723521396,13.5582969749976,13.2972037811772,17.2464076984435,10.2211995732687,3.46253837091075,4.60305791257344,23.7559392927654,1.47309299120532,3.12289063110489,2.98872735763515,3.42118046630164,3.46621081022145,5.64702942956021,5.50888997224854,7.68354141389776,5.69147415625834,2.15567992932842,2.83659120251729,1.58356011747554,1.31517439456545,1.94633074457919,1.74126083261083,2.26360350048738,1.79130840136644,1.40442637462647,0.257347907114715,1.13665399758237,1.03562886267751,1.40715635988658,0.900310307305074,0.94697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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=71310 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UYK3,E9Q645 | |||
|association_with_transcript=96bp_to_ENSMUST00000034145,ENSMUST00000168190,NM_001111304,NM_027758,uc009mju.2,uc009mjv.2_5end | |||
|cluster_id=chr8:85689347..85689398,+ | |||
|description=CAGE_peak_1_at_Tbc1d9_5end | |||
|id=chr8:85689347..85689398,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.31e-14!23;CL:0000337!2.31e-14!23;CL:0000540!1.13e-10!33;CL:0000047!1.13e-10!33;CL:0000031!1.13e-10!33;CL:0000404!1.13e-10!33;CL:0000393!3.74e-08!39;CL:0000211!3.74e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.68e-14,23;CL:0000337,1.68e-14,23;CL:0000540,1.25e-10,33;CL:0000047,1.25e-10,33;CL:0000031,1.25e-10,33;CL:0000404,1.25e-10,33;CL:0000393,5.68e-08,39;CL:0000211,5.68e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.43e-19!52;UBERON:0005068!9.43e-19!52;UBERON:0006241!9.43e-19!52;UBERON:0007135!9.43e-19!52;UBERON:0000033!2.05e-18!63;UBERON:0001017!4.33e-18!73;UBERON:0005743!4.33e-18!73;UBERON:0000955!1.54e-17!50;UBERON:0006238!1.54e-17!50;UBERON:0002020!2.96e-17!34;UBERON:0000073!3.94e-17!75;UBERON:0001016!3.94e-17!75;UBERON:0002616!5.49e-17!49;UBERON:0002346!1.69e-15!71;UBERON:0003075!1.69e-15!71;UBERON:0007284!1.69e-15!71;UBERON:0003056!3.96e-15!49;UBERON:0003080!2.33e-14!40;UBERON:0002791!3.35e-14!29;UBERON:0003528!3.35e-14!29;UBERON:0001893!3.35e-14!29;UBERON:0004121!5.92e-14!102;UBERON:0000924!5.92e-14!102;UBERON:0006601!5.92e-14!102;UBERON:0002780!7.58e-14!39;UBERON:0001890!7.58e-14!39;UBERON:0006240!7.58e-14!39;UBERON:0000956!1.05e-09!21;UBERON:0001869!1.05e-09!21;UBERON:0000203!1.05e-09!21;UBERON:0002619!6.41e-08!17;UBERON:0002021!2.94e-07!10;UBERON:0000411!2.94e-07!10;UBERON:0001950!2.94e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.05e-20,54;UBERON:0001049,4.49e-19,52;UBERON:0005068,4.49e-19,52;UBERON:0006241,4.49e-19,52;UBERON:0007135,4.49e-19,52;UBERON:0002346,5.64e-19,64;UBERON:0003075,5.64e-19,64;UBERON:0007284,5.64e-19,64;UBERON:0001017,4.81e-18,73;UBERON:0002020,2.00e-17,34;UBERON:0001016,5.26e-17,75;UBERON:0010371,7.95e-17,73;UBERON:0000955,5.53e-16,47;UBERON:0006238,5.53e-16,47;UBERON:0004121,6.40e-16,95;UBERON:0000924,6.40e-16,95;UBERON:0006601,6.40e-16,95;UBERON:0002616,1.94e-15,46;UBERON:0003056,2.83e-15,49;UBERON:0003080,1.70e-14,40;UBERON:0003528,2.45e-14,29;UBERON:0002791,2.45e-14,29;UBERON:0001893,2.45e-14,29;UBERON:0002780,5.59e-14,39;UBERON:0001890,5.59e-14,39;UBERON:0006240,5.59e-14,39;UBERON:0000956,8.61e-10,21;UBERON:0001869,8.61e-10,21;UBERON:0000203,8.61e-10,21;UBERON:0010314,8.32e-09,92;UBERON:0002619,5.47e-08,17;UBERON:0002021,2.55e-07,10;UBERON:0000411,2.55e-07,10;UBERON:0001950,2.55e-07,10 | |||
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| |||
|short_description=p1@Tbc1d9 | |||
}} |
Latest revision as of 20:27, 25 September 2015
Short description: | p1@Tbc1d9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tbc1d9_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 96bp_to_ENSMUST00000034145, ENSMUST00000168190, NM_001111304, NM_027758, uc009mju.2, uc009mjv.2_5end |
EntrezGene: | Tbc1d9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.68e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.68e-14 | 23 |
neuron | 1.25e-10 | 33 |
neuronal stem cell | 1.25e-10 | 33 |
neuroblast | 1.25e-10 | 33 |
electrically signaling cell | 1.25e-10 | 33 |
electrically responsive cell | 5.68e-08 | 39 |
electrically active cell | 5.68e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.05e-20 | 54 |
neural tube | 4.49e-19 | 52 |
neural rod | 4.49e-19 | 52 |
future spinal cord | 4.49e-19 | 52 |
neural keel | 4.49e-19 | 52 |
neurectoderm | 5.64e-19 | 64 |
neural plate | 5.64e-19 | 64 |
presumptive neural plate | 5.64e-19 | 64 |
central nervous system | 4.81e-18 | 73 |
gray matter | 2.00e-17 | 34 |
nervous system | 5.26e-17 | 75 |
ecto-epithelium | 7.95e-17 | 73 |
brain | 5.53e-16 | 47 |
future brain | 5.53e-16 | 47 |
ectoderm-derived structure | 6.40e-16 | 95 |
ectoderm | 6.40e-16 | 95 |
presumptive ectoderm | 6.40e-16 | 95 |
regional part of brain | 1.94e-15 | 46 |
pre-chordal neural plate | 2.83e-15 | 49 |
anterior neural tube | 1.70e-14 | 40 |
brain grey matter | 2.45e-14 | 29 |
regional part of telencephalon | 2.45e-14 | 29 |
telencephalon | 2.45e-14 | 29 |
regional part of forebrain | 5.59e-14 | 39 |
forebrain | 5.59e-14 | 39 |
future forebrain | 5.59e-14 | 39 |
cerebral cortex | 8.61e-10 | 21 |
cerebral hemisphere | 8.61e-10 | 21 |
pallium | 8.61e-10 | 21 |
structure with developmental contribution from neural crest | 8.32e-09 | 92 |
regional part of cerebral cortex | 5.47e-08 | 17 |
occipital lobe | 2.55e-07 | 10 |
visual cortex | 2.55e-07 | 10 |
neocortex | 2.55e-07 | 10 |