FFCP PHASE1:Mm9::chr8:127316913..127316956,+: Difference between revisions
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{{FFCP|EntrezGene=330863|HGNC=|MCL_coexpression_id=22|UniProt=Q505D9,Q8BQ60|association_with_transcript=0bp_to_ENSMUST00000167588,NM_198632,uc012gmz.1_5end|description=CAGE_peak_1_at_Trim67_5end|id=chr8:127316913..127316956,+|ontology_enrichment_celltype=CL:0000221!5.90e-17!44;CL:0000133!5.90e-17!44;CL:0002319!8.87e-17!43;CL:0000540!3.16e-16!33;CL:0000047!3.16e-16!33;CL:0000031!3.16e-16!33;CL:0000404!3.16e-16!33;CL:0000117!9.64e-15!23;CL:0000337!9.64e-15!23;CL:0000055!8.02e-12!50;CL:0000393!2.61e-11!39;CL:0000211!2.61e-11!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.44e-19,23;CL:0000337,1.44e-19,23;CL:0000540,4.31e-18,33;CL:0000047,4.31e-18,33;CL:0000031,4.31e-18,33;CL:0000404,4.31e-18,33;CL:0002319,1.47e-15,43;CL:0000221,5.76e-15,44;CL:0000133,5.76e-15,44;CL:0000393,7.92e-14,39;CL:0000211,7.92e-14,39;CL:0002609,9.45e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.26e-24!75;UBERON:0001016!1.26e-24!75;UBERON:0001017!2.74e-24!73;UBERON:0005743!2.74e-24!73;UBERON:0004121!4.92e-24!102;UBERON:0000924!4.92e-24!102;UBERON:0006601!4.92e-24!102;UBERON:0002346!2.91e-23!71;UBERON:0003075!2.91e-23!71;UBERON:0007284!2.91e-23!71;UBERON:0000033!1.73e-18!63;UBERON:0001049!7.48e-18!52;UBERON:0005068!7.48e-18!52;UBERON:0006241!7.48e-18!52;UBERON:0007135!7.48e-18!52;UBERON:0000955!2.27e-15!50;UBERON:0006238!2.27e-15!50;UBERON:0003056!4.59e-15!49;UBERON:0002616!7.41e-15!49;UBERON:0002020!2.79e-12!34;UBERON:0003080!1.36e-11!40;UBERON:0002780!2.56e-11!39;UBERON:0001890!2.56e-11!39;UBERON:0006240!2.56e-11!39;UBERON:0007811!4.18e-09!86;UBERON:0002791!4.45e-09!29;UBERON:0003528!4.45e-09!29;UBERON:0001893!4.45e-09!29;UBERON:0003076!1.88e-07!12;UBERON:0003057!1.88e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.10e-18,73;UBERON:0001016,3.92e-17,75;UBERON:0004121,1.42e-16,95;UBERON:0000924,1.42e-16,95;UBERON:0006601,1.42e-16,95;UBERON:0002346,6.24e-16,64;UBERON:0003075,6.24e-16,64;UBERON:0007284,6.24e-16,64;UBERON:0000073,1.20e-12,54;UBERON:0010371,2.33e-12,73;UBERON:0001049,4.60e-12,52;UBERON:0005068,4.60e-12,52;UBERON:0006241,4.60e-12,52;UBERON:0007135,4.60e-12,52;UBERON:0010314,5.44e-09,92;UBERON:0003076,6.33e-09,12;UBERON:0003057,6.33e-09,12;UBERON:0003056,6.38e-09,49;UBERON:0002020,9.64e-09,34;UBERON:0000955,1.39e-08,47;UBERON:0006238,1.39e-08,47;UBERON:0002616,4.79e-08,46;UBERON:0002240,6.20e-07,6;UBERON:0005174,6.20e-07,6;UBERON:0001137,6.20e-07,6|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0.467225281191051,0,0,0,0,0,0.171200729931206,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0.782391344348039,1.52617609466313,0.659058548203415,0.194429899074283,1.1198913730029,0,0,0,0,0,0,0,31.3590514332377,27.5075309221457,24.719424736741,0,0,0,0,0,1.49800055259202,1.92109152660777,23.433852381716,32.9414489529325,30.7074443573018,14.568200204594,11.7060326704355,20.0884910712525,17.1563393122643,23.8996884518605,1.10115880999389,1.27687338085188,1.0752457327937,37.1919331399147,32.2036505480482,30.7338888628488,2.51264699101243,0.56276261003168,1.5279824777681,27.9897156199984,21.3557521198654,30.5695091153493,0.454357159999104,0.68014404096107,0,0,0,0,0,0,0.421333260395256,0.170430322578058,0,0,0.704217098883403,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,1.90833859442749,0.608930956624282,0.691846491768175,1.50722640552623,1.64624189989987,0,0,0.433798070759735,0,0,0,0,0,6.44117753425404,11.51956887474,0.255457055208591,0,0,0,1.3481157546434,0.457500602818626,36.1884534085049,0.869121600961382,0.255715457330331,0.62336413367868,1.46017136760982,0,0,0,0.420883711772948,0.260240885925407,1.83921683546778,2.52086981727489,3.76762044589288,7.89223390155403,7.94305065766069,8.71426038405478,2.06962696591213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36012412292203,0,0,0.154267112887378,0,0,0.116765342367169,0,0,0.0810688095458557,0,0,0,0.210289948564127,34.2672359223017,0,0,0,0.232236671860439,0.77320476793256,0.201683524623343,1.11189021922435,0.380451252225118,0,0.494096864172033,0,0.198956472041151,0,0,0,0,0.379335801906163,0.456994050438915,0,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0.166845105716094,0.196558995113203,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0.325929952884052,0.169745085775188,0.469380496577004,1.00503754465089,0,0.390267295715598,0.945810864637146,1.32878813789265,1.91345722388985,0,0,0.289298117163023,0,0,0,0,2.72936002979246,1.87538698547525,0,0,0.631016438832513,1.17131623288992,1.50796378412959,0.238968797952552,1.33679204449436,0.849229592366497,1.61924280669958,1.75353514746787,2.37172666767914,3.53453448063988,0,0,0,0,0,0.485561272309963,0.302323556964751,0,0.295301892880773,0.614870295887855,0.258428293168221,0,0.356497378384721,0.316036757935816,0,0,1.02131881726136,0.540183282093931,0.258717367565509,0.428674070063185,0.709360934569094,2.14042581122485,2.30368628842969,5.78483403317739,0,0,0,0,0,0,0,0,0.582961673259701,1.8542530201051,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0.432021363287205,0.209088296014469,0.436725127492355,0.404593039154462,0,0,0,0,0,0.448549638131936,0.165458490457098,0,0.129159823477731,0,0,0.13020438484395,0,0.241584120826006,0.288030006257865,0,0,0,0,0.179026695667481,0,0,0,0,0.0762068066549998,0.100826185136841,0.194915761479505,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0,0,0,0.564751842617067,0.460325236507177,0.572895513439397,0.859265911718438,0,1.5107877947794,0,0.45032120322422,1.35942722695261,0.51776031175182,1.97195960409936,3.99024873401031,2.90247129782028,3.16038732188782,5.03071590307158,4.41224420280034,3.77819437262746,3.29656091582231,2.88827288632634,6.06473308233114,5.0695859978048,3.77252682772152,3.7456602987953,4.03358460150676,5.85841783347255,3.33405583898152,5.33067899346335,3.47236596834669,4.53294490883637,5.7407578852415,2.40008476669791,2.66213709239006,2.14592570952589,2.32554266611726,3.29382831453657,3.46919892355874,2.92684756596436,2.89376682581627,3.53090695999241,1.68342681497322,4.27086065247027,4.82671963640261,3.27384834535751,4.49316839439301,3.08650577569826,12.9901500527732,3.50897412668113,5.80151845930405,1.14772999241306,0.441182838239031,0.463735671240843|short_description=p1@Trim67}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=330863 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q505D9,Q8BQ60 | |||
|association_with_transcript=0bp_to_ENSMUST00000167588,NM_198632,uc012gmz.1_5end | |||
|cluster_id=chr8:127316913..127316956,+ | |||
|description=CAGE_peak_1_at_Trim67_5end | |||
|id=chr8:127316913..127316956,+ | |||
|ontology_enrichment_celltype=CL:0000221!5.90e-17!44;CL:0000133!5.90e-17!44;CL:0002319!8.87e-17!43;CL:0000540!3.16e-16!33;CL:0000047!3.16e-16!33;CL:0000031!3.16e-16!33;CL:0000404!3.16e-16!33;CL:0000117!9.64e-15!23;CL:0000337!9.64e-15!23;CL:0000055!8.02e-12!50;CL:0000393!2.61e-11!39;CL:0000211!2.61e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.44e-19,23;CL:0000337,1.44e-19,23;CL:0000540,4.31e-18,33;CL:0000047,4.31e-18,33;CL:0000031,4.31e-18,33;CL:0000404,4.31e-18,33;CL:0002319,1.47e-15,43;CL:0000221,5.76e-15,44;CL:0000133,5.76e-15,44;CL:0000393,7.92e-14,39;CL:0000211,7.92e-14,39;CL:0002609,9.45e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.26e-24!75;UBERON:0001016!1.26e-24!75;UBERON:0001017!2.74e-24!73;UBERON:0005743!2.74e-24!73;UBERON:0004121!4.92e-24!102;UBERON:0000924!4.92e-24!102;UBERON:0006601!4.92e-24!102;UBERON:0002346!2.91e-23!71;UBERON:0003075!2.91e-23!71;UBERON:0007284!2.91e-23!71;UBERON:0000033!1.73e-18!63;UBERON:0001049!7.48e-18!52;UBERON:0005068!7.48e-18!52;UBERON:0006241!7.48e-18!52;UBERON:0007135!7.48e-18!52;UBERON:0000955!2.27e-15!50;UBERON:0006238!2.27e-15!50;UBERON:0003056!4.59e-15!49;UBERON:0002616!7.41e-15!49;UBERON:0002020!2.79e-12!34;UBERON:0003080!1.36e-11!40;UBERON:0002780!2.56e-11!39;UBERON:0001890!2.56e-11!39;UBERON:0006240!2.56e-11!39;UBERON:0007811!4.18e-09!86;UBERON:0002791!4.45e-09!29;UBERON:0003528!4.45e-09!29;UBERON:0001893!4.45e-09!29;UBERON:0003076!1.88e-07!12;UBERON:0003057!1.88e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.10e-18,73;UBERON:0001016,3.92e-17,75;UBERON:0004121,1.42e-16,95;UBERON:0000924,1.42e-16,95;UBERON:0006601,1.42e-16,95;UBERON:0002346,6.24e-16,64;UBERON:0003075,6.24e-16,64;UBERON:0007284,6.24e-16,64;UBERON:0000073,1.20e-12,54;UBERON:0010371,2.33e-12,73;UBERON:0001049,4.60e-12,52;UBERON:0005068,4.60e-12,52;UBERON:0006241,4.60e-12,52;UBERON:0007135,4.60e-12,52;UBERON:0010314,5.44e-09,92;UBERON:0003076,6.33e-09,12;UBERON:0003057,6.33e-09,12;UBERON:0003056,6.38e-09,49;UBERON:0002020,9.64e-09,34;UBERON:0000955,1.39e-08,47;UBERON:0006238,1.39e-08,47;UBERON:0002616,4.79e-08,46;UBERON:0002240,6.20e-07,6;UBERON:0005174,6.20e-07,6;UBERON:0001137,6.20e-07,6 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0.467225281191051,0,0,0,0,0,0.171200729931206,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0.782391344348039,1.52617609466313,0.659058548203415,0.194429899074283,1.1198913730029,0,0,0,0,0,0,0,31.3590514332377,27.5075309221457,24.719424736741,0,0,0,0,0,1.49800055259202,1.92109152660777,23.433852381716,32.9414489529325,30.7074443573018,14.568200204594,11.7060326704355,20.0884910712525,17.1563393122643,23.8996884518605,1.10115880999389,1.27687338085188,1.0752457327937,37.1919331399147,32.2036505480482,30.7338888628488,2.51264699101243,0.56276261003168,1.5279824777681,27.9897156199984,21.3557521198654,30.5695091153493,0.454357159999104,0.68014404096107,0,0,0,0,0,0,0.421333260395256,0.170430322578058,0,0,0.704217098883403,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,1.90833859442749,0.608930956624282,0.691846491768175,1.50722640552623,1.64624189989987,0,0,0.433798070759735,0,0,0,0,0,6.44117753425404,11.51956887474,0.255457055208591,0,0,0,1.3481157546434,0.457500602818626,36.1884534085049,0.869121600961382,0.255715457330331,0.62336413367868,1.46017136760982,0,0,0,0.420883711772948,0.260240885925407,1.83921683546778,2.52086981727489,3.76762044589288,7.89223390155403,7.94305065766069,8.71426038405478,2.06962696591213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36012412292203,0,0,0.154267112887378,0,0,0.116765342367169,0,0,0.0810688095458557,0,0,0,0.210289948564127,34.2672359223017,0,0,0,0.232236671860439,0.77320476793256,0.201683524623343,1.11189021922435,0.380451252225118,0,0.494096864172033,0,0.198956472041151,0,0,0,0,0.379335801906163,0.456994050438915,0,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0.166845105716094,0.196558995113203,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0.325929952884052,0.169745085775188,0.469380496577004,1.00503754465089,0,0.390267295715598,0.945810864637146,1.32878813789265,1.91345722388985,0,0,0.289298117163023,0,0,0,0,2.72936002979246,1.87538698547525,0,0,0.631016438832513,1.17131623288992,1.50796378412959,0.238968797952552,1.33679204449436,0.849229592366497,1.61924280669958,1.75353514746787,2.37172666767914,3.53453448063988,0,0,0,0,0,0.485561272309963,0.302323556964751,0,0.295301892880773,0.614870295887855,0.258428293168221,0,0.356497378384721,0.316036757935816,0,0,1.02131881726136,0.540183282093931,0.258717367565509,0.428674070063185,0.709360934569094,2.14042581122485,2.30368628842969,5.78483403317739,0,0,0,0,0,0,0,0,0.582961673259701,1.8542530201051,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0.432021363287205,0.209088296014469,0.436725127492355,0.404593039154462,0,0,0,0,0,0.448549638131936,0.165458490457098,0,0.129159823477731,0,0,0.13020438484395,0,0.241584120826006,0.288030006257865,0,0,0,0,0.179026695667481,0,0,0,0,0.0762068066549998,0.100826185136841,0.194915761479505,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0,0,0,0.564751842617067,0.460325236507177,0.572895513439397,0.859265911718438,0,1.5107877947794,0,0.45032120322422,1.35942722695261,0.51776031175182,1.97195960409936,3.99024873401031,2.90247129782028,3.16038732188782,5.03071590307158,4.41224420280034,3.77819437262746,3.29656091582231,2.88827288632634,6.06473308233114,5.0695859978048,3.77252682772152,3.7456602987953,4.03358460150676,5.85841783347255,3.33405583898152,5.33067899346335,3.47236596834669,4.53294490883637,5.7407578852415,2.40008476669791,2.66213709239006,2.14592570952589,2.32554266611726,3.29382831453657,3.46919892355874,2.92684756596436,2.89376682581627,3.53090695999241,1.68342681497322,4.27086065247027,4.82671963640261,3.27384834535751,4.49316839439301,3.08650577569826,12.9901500527732,3.50897412668113,5.80151845930405,1.14772999241306,0.441182838239031,0.463735671240843 | |||
|short_description=p1@Trim67 | |||
}} |
Latest revision as of 17:37, 1 October 2015
Short description: | p1@Trim67 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Trim67_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000167588, NM_198632, uc012gmz.1_5end |
EntrezGene: | Trim67 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.44e-19 | 23 |
neuroblast (sensu Vertebrata) | 1.44e-19 | 23 |
neuron | 4.31e-18 | 33 |
neuronal stem cell | 4.31e-18 | 33 |
neuroblast | 4.31e-18 | 33 |
electrically signaling cell | 4.31e-18 | 33 |
neural cell | 1.47e-15 | 43 |
ectodermal cell | 5.76e-15 | 44 |
neurectodermal cell | 5.76e-15 | 44 |
electrically responsive cell | 7.92e-14 | 39 |
electrically active cell | 7.92e-14 | 39 |
neuron of cerebral cortex | 9.45e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.10e-18 | 73 |
nervous system | 3.92e-17 | 75 |
ectoderm-derived structure | 1.42e-16 | 95 |
ectoderm | 1.42e-16 | 95 |
presumptive ectoderm | 1.42e-16 | 95 |
neurectoderm | 6.24e-16 | 64 |
neural plate | 6.24e-16 | 64 |
presumptive neural plate | 6.24e-16 | 64 |
regional part of nervous system | 1.20e-12 | 54 |
ecto-epithelium | 2.33e-12 | 73 |
neural tube | 4.60e-12 | 52 |
neural rod | 4.60e-12 | 52 |
future spinal cord | 4.60e-12 | 52 |
neural keel | 4.60e-12 | 52 |
structure with developmental contribution from neural crest | 5.44e-09 | 92 |
posterior neural tube | 6.33e-09 | 12 |
chordal neural plate | 6.33e-09 | 12 |
pre-chordal neural plate | 6.38e-09 | 49 |
gray matter | 9.64e-09 | 34 |
brain | 1.39e-08 | 47 |
future brain | 1.39e-08 | 47 |
regional part of brain | 4.79e-08 | 46 |
spinal cord | 6.20e-07 | 6 |
dorsal region element | 6.20e-07 | 6 |
dorsum | 6.20e-07 | 6 |