FFCP PHASE1:Mm9::chr7:3303629..3303691,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=18752|HGNC=|MCL_coexpression_id=2|UniProt=E9QMP2,P63318,Q3UN66,Q2NKI4|association_with_transcript=0bp_to_ENSMUST00000100301,NM_011102,uc009eut.1,uc012ewe.1_5end|description=CAGE_peak_1_at_Prkcc_5end|id=chr7:3303629..3303691,+|ontology_enrichment_celltype=CL:0002319!3.20e-10!43;CL:0000221!4.09e-10!44;CL:0000133!4.09e-10!44;CL:0000117!7.97e-10!23;CL:0000337!7.97e-10!23;CL:0000540!7.15e-09!33;CL:0000047!7.15e-09!33;CL:0000031!7.15e-09!33;CL:0000404!7.15e-09!33;CL:0000055!2.81e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,2.98e-12,23;CL:0000337,2.98e-12,23;CL:0002319,5.25e-09,43;CL:0000221,1.17e-08,44;CL:0000133,1.17e-08,44;CL:0000540,4.78e-07,33;CL:0000047,4.78e-07,33;CL:0000031,4.78e-07,33;CL:0000404,4.78e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.03e-30!73;UBERON:0005743!2.03e-30!73;UBERON:0000073!2.67e-29!75;UBERON:0001016!2.67e-29!75;UBERON:0001049!1.59e-25!52;UBERON:0005068!1.59e-25!52;UBERON:0006241!1.59e-25!52;UBERON:0007135!1.59e-25!52;UBERON:0000955!6.06e-25!50;UBERON:0006238!6.06e-25!50;UBERON:0002616!3.26e-24!49;UBERON:0000033!1.43e-20!63;UBERON:0002346!9.66e-20!71;UBERON:0003075!9.66e-20!71;UBERON:0007284!9.66e-20!71;UBERON:0003080!1.17e-19!40;UBERON:0002780!5.38e-19!39;UBERON:0001890!5.38e-19!39;UBERON:0006240!5.38e-19!39;UBERON:0002020!1.58e-18!34;UBERON:0004121!1.61e-18!102;UBERON:0000924!1.61e-18!102;UBERON:0006601!1.61e-18!102;UBERON:0003056!2.83e-16!49;UBERON:0002791!6.74e-16!29;UBERON:0003528!6.74e-16!29;UBERON:0001893!6.74e-16!29;UBERON:0000956!1.13e-11!21;UBERON:0001869!1.13e-11!21;UBERON:0000203!1.13e-11!21;UBERON:0002619!2.84e-10!17;UBERON:0007811!2.06e-09!86;UBERON:0002021!5.12e-09!10;UBERON:0000411!5.12e-09!10;UBERON:0001950!5.12e-09!10;UBERON:0000153!9.08e-08!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.73e-33,54;UBERON:0001017,1.98e-32,73;UBERON:0001016,3.83e-31,75;UBERON:0001049,8.11e-31,52;UBERON:0005068,8.11e-31,52;UBERON:0006241,8.11e-31,52;UBERON:0007135,8.11e-31,52;UBERON:0000955,1.30e-27,47;UBERON:0006238,1.30e-27,47;UBERON:0002616,1.72e-26,46;UBERON:0002020,8.82e-26,34;UBERON:0003528,8.78e-23,29;UBERON:0002791,8.78e-23,29;UBERON:0001893,8.78e-23,29;UBERON:0002346,1.42e-22,64;UBERON:0003075,1.42e-22,64;UBERON:0007284,1.42e-22,64;UBERON:0003080,4.29e-22,40;UBERON:0004121,2.60e-21,95;UBERON:0000924,2.60e-21,95;UBERON:0006601,2.60e-21,95;UBERON:0002780,4.57e-21,39;UBERON:0001890,4.57e-21,39;UBERON:0006240,4.57e-21,39;UBERON:0010371,3.24e-18,73;UBERON:0000956,4.62e-17,21;UBERON:0001869,4.62e-17,21;UBERON:0000203,4.62e-17,21;UBERON:0003056,3.16e-16,49;UBERON:0002619,1.33e-15,17;UBERON:0002021,2.96e-14,10;UBERON:0000411,2.96e-14,10;UBERON:0001950,2.96e-14,10;UBERON:0010314,6.31e-12,92;UBERON:0003076,4.58e-09,12;UBERON:0003057,4.58e-09,12;UBERON:0000025,1.89e-07,114;UBERON:0002420,7.44e-07,8;UBERON:0007245,7.44e-07,8;UBERON:0010009,7.44e-07,8;UBERON:0010011,7.44e-07,8;UBERON:0000454,7.44e-07,8|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.607425802169478,0,1.73504190947031,3.01651753932625,5.09267582157636,28.8296753612127,0.198581902401771,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0.485510353031154,0,0,0.183546752161682,0,1.96222640742402,0.659058548203415,1.55543919259427,1.25987779462826,1.43752564364972,2.01339127269284,0,0.336093799142464,0,0,0,0.202316460859598,2.11596391708813,1.90149421051854,0.338844532069132,0,0,0,0,1.79760066311043,4.99483796918021,0.311068836925433,2.29510095163874,1.05162480675691,6.85562362569129,8.1721360152097,1.22490799214954,1.43768206527355,0,83.6880695595354,112.747919529221,82.3331018253465,1.18697658957174,0.731901148819277,1.56274011167028,22.6138229191119,30.3891809417107,54.3961762085444,6.48182888042069,5.41012387036591,0.745597783301202,0.075726193333184,0,0,0,0,0,0,0,6.88177658645584,0,0,0,0.14084341977668,0,0,0,0,0,0,5.1382745873577,0,0.148442139064825,0,0,0.230615497256059,0.150722640552623,0,0,0,0.144599356919912,0.884610551949874,0,0.441683036920787,0,0,212.558858630383,179.076934325504,0,0,0,0,20.2217363196511,126.270166377941,10.8062742817063,197.985900699003,170.56221003933,91.2189515616469,112.757677832092,0.407357455401265,0.622034853050465,0,0.210441855886474,0,0.229902104433473,0,0.150704817835715,0.0680364991513279,0.2562274405697,0.281105173679186,0,0,0,0.175951124163949,0,0,1.0447564995665,0,0,0,0,0,0,0,0,0.473489471170421,0,0,0,0,0,0,0.164167464079095,0.0810688095458557,0.146199987425332,0,0,366.745670295838,16.9792610425819,0,0,0.639864751605702,0.232236671860439,0,0,0.22237804384487,0,0.474529061544512,0,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0.624075346229121,0.252578877947112,0,0,0.739012760666419,0,0,0.169745085775188,0,0.335012514883631,0,0,0,0,0.159454768657487,0.491589944147214,0,0.578596234326046,0,0,0,0,6.42202359951168,6.32943107597897,0,0.252470927204373,0.94652465824877,0.780877488593277,0.646270193198397,0.716906393857656,0,0,0,0.584511715822624,0.395287777946524,59.4444435380343,0.141940085208269,1.24645922567079,4.39794790254655,0.164970122972535,0,0,0,0.188605079755898,0,0,0.258428293168221,0,0.356497378384721,0.316036757935816,0,1.03135543248187,2.38307724027652,0.720244376125241,0.388076051348264,0.428674070063185,0.709360934569094,0.713475270408282,0.822745103010605,1.2178597964584,0.704015124191131,0,0,0,0,0,0,0,0,8.52956389248344,0.341741761595705,0,0,0.753473828018764,1.0935538217682,1.60144721244566,0,0,0,0,0.474503990371703,0.203319467126849,0.108005340821801,0,0,0,0,0.26175594198403,0,0,0,0,0.330916980914195,0.194451188344048,0,0,0,0.13020438484395,0.314578033277133,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0.0974578807397524,0,0,0.226730383615211,0.665957860122194,1.25599399253266,0.335769232728157,0.19318959403219,0,0,0,0,278.987410252831,266.988637174163,268.115100289638,265.685019903341,164.419804744954,196.402413321322,205.881862570701,213.001929125056,163.131267234314,175.520745683867,0.103787347584177,1.19707462020309,0.341467211508268,0.243106717068294,0.209613162627982,0.551530525350042,2.00022055021454,1.44224540067226,0.320919209591815,1.01078884705519,0.760437899670719,1.69763707247469,1.03005658216871,0.960377286073039,0.976402972245426,0.952587382566147,1.0429589335037,0.578727661391115,1.23625770240992,0.588795680537589,0,0.354951612318675,0.715308569841963,1.45346416632329,0.846984423737976,0.930760686808441,0.914639864363863,1.57841826862706,1.35804113845862,2.24456908663095,0.711810108745045,1.47756723563345,0.409231043169689,0.929621047115796,0.385813221962283,3.49734809113124,1.16965804222704,2.79332370262788,0.765153328275374,0.882365676478062,0|short_description=p1@Prkcc}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18752 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=E9QMP2,P63318,Q3UN66,Q2NKI4 | |||
|association_with_transcript=0bp_to_ENSMUST00000100301,NM_011102,uc009eut.1,uc012ewe.1_5end | |||
|cluster_id=chr7:3303629..3303691,+ | |||
|description=CAGE_peak_1_at_Prkcc_5end | |||
|id=chr7:3303629..3303691,+ | |||
|ontology_enrichment_celltype=CL:0002319!3.20e-10!43;CL:0000221!4.09e-10!44;CL:0000133!4.09e-10!44;CL:0000117!7.97e-10!23;CL:0000337!7.97e-10!23;CL:0000540!7.15e-09!33;CL:0000047!7.15e-09!33;CL:0000031!7.15e-09!33;CL:0000404!7.15e-09!33;CL:0000055!2.81e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.98e-12,23;CL:0000337,2.98e-12,23;CL:0002319,5.25e-09,43;CL:0000221,1.17e-08,44;CL:0000133,1.17e-08,44;CL:0000540,4.78e-07,33;CL:0000047,4.78e-07,33;CL:0000031,4.78e-07,33;CL:0000404,4.78e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.03e-30!73;UBERON:0005743!2.03e-30!73;UBERON:0000073!2.67e-29!75;UBERON:0001016!2.67e-29!75;UBERON:0001049!1.59e-25!52;UBERON:0005068!1.59e-25!52;UBERON:0006241!1.59e-25!52;UBERON:0007135!1.59e-25!52;UBERON:0000955!6.06e-25!50;UBERON:0006238!6.06e-25!50;UBERON:0002616!3.26e-24!49;UBERON:0000033!1.43e-20!63;UBERON:0002346!9.66e-20!71;UBERON:0003075!9.66e-20!71;UBERON:0007284!9.66e-20!71;UBERON:0003080!1.17e-19!40;UBERON:0002780!5.38e-19!39;UBERON:0001890!5.38e-19!39;UBERON:0006240!5.38e-19!39;UBERON:0002020!1.58e-18!34;UBERON:0004121!1.61e-18!102;UBERON:0000924!1.61e-18!102;UBERON:0006601!1.61e-18!102;UBERON:0003056!2.83e-16!49;UBERON:0002791!6.74e-16!29;UBERON:0003528!6.74e-16!29;UBERON:0001893!6.74e-16!29;UBERON:0000956!1.13e-11!21;UBERON:0001869!1.13e-11!21;UBERON:0000203!1.13e-11!21;UBERON:0002619!2.84e-10!17;UBERON:0007811!2.06e-09!86;UBERON:0002021!5.12e-09!10;UBERON:0000411!5.12e-09!10;UBERON:0001950!5.12e-09!10;UBERON:0000153!9.08e-08!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.73e-33,54;UBERON:0001017,1.98e-32,73;UBERON:0001016,3.83e-31,75;UBERON:0001049,8.11e-31,52;UBERON:0005068,8.11e-31,52;UBERON:0006241,8.11e-31,52;UBERON:0007135,8.11e-31,52;UBERON:0000955,1.30e-27,47;UBERON:0006238,1.30e-27,47;UBERON:0002616,1.72e-26,46;UBERON:0002020,8.82e-26,34;UBERON:0003528,8.78e-23,29;UBERON:0002791,8.78e-23,29;UBERON:0001893,8.78e-23,29;UBERON:0002346,1.42e-22,64;UBERON:0003075,1.42e-22,64;UBERON:0007284,1.42e-22,64;UBERON:0003080,4.29e-22,40;UBERON:0004121,2.60e-21,95;UBERON:0000924,2.60e-21,95;UBERON:0006601,2.60e-21,95;UBERON:0002780,4.57e-21,39;UBERON:0001890,4.57e-21,39;UBERON:0006240,4.57e-21,39;UBERON:0010371,3.24e-18,73;UBERON:0000956,4.62e-17,21;UBERON:0001869,4.62e-17,21;UBERON:0000203,4.62e-17,21;UBERON:0003056,3.16e-16,49;UBERON:0002619,1.33e-15,17;UBERON:0002021,2.96e-14,10;UBERON:0000411,2.96e-14,10;UBERON:0001950,2.96e-14,10;UBERON:0010314,6.31e-12,92;UBERON:0003076,4.58e-09,12;UBERON:0003057,4.58e-09,12;UBERON:0000025,1.89e-07,114;UBERON:0002420,7.44e-07,8;UBERON:0007245,7.44e-07,8;UBERON:0010009,7.44e-07,8;UBERON:0010011,7.44e-07,8;UBERON:0000454,7.44e-07,8 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.607425802169478,0,1.73504190947031,3.01651753932625,5.09267582157636,28.8296753612127,0.198581902401771,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0.485510353031154,0,0,0.183546752161682,0,1.96222640742402,0.659058548203415,1.55543919259427,1.25987779462826,1.43752564364972,2.01339127269284,0,0.336093799142464,0,0,0,0.202316460859598,2.11596391708813,1.90149421051854,0.338844532069132,0,0,0,0,1.79760066311043,4.99483796918021,0.311068836925433,2.29510095163874,1.05162480675691,6.85562362569129,8.1721360152097,1.22490799214954,1.43768206527355,0,83.6880695595354,112.747919529221,82.3331018253465,1.18697658957174,0.731901148819277,1.56274011167028,22.6138229191119,30.3891809417107,54.3961762085444,6.48182888042069,5.41012387036591,0.745597783301202,0.075726193333184,0,0,0,0,0,0,0,6.88177658645584,0,0,0,0.14084341977668,0,0,0,0,0,0,5.1382745873577,0,0.148442139064825,0,0,0.230615497256059,0.150722640552623,0,0,0,0.144599356919912,0.884610551949874,0,0.441683036920787,0,0,212.558858630383,179.076934325504,0,0,0,0,20.2217363196511,126.270166377941,10.8062742817063,197.985900699003,170.56221003933,91.2189515616469,112.757677832092,0.407357455401265,0.622034853050465,0,0.210441855886474,0,0.229902104433473,0,0.150704817835715,0.0680364991513279,0.2562274405697,0.281105173679186,0,0,0,0.175951124163949,0,0,1.0447564995665,0,0,0,0,0,0,0,0,0.473489471170421,0,0,0,0,0,0,0.164167464079095,0.0810688095458557,0.146199987425332,0,0,366.745670295838,16.9792610425819,0,0,0.639864751605702,0.232236671860439,0,0,0.22237804384487,0,0.474529061544512,0,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0.624075346229121,0.252578877947112,0,0,0.739012760666419,0,0,0.169745085775188,0,0.335012514883631,0,0,0,0,0.159454768657487,0.491589944147214,0,0.578596234326046,0,0,0,0,6.42202359951168,6.32943107597897,0,0.252470927204373,0.94652465824877,0.780877488593277,0.646270193198397,0.716906393857656,0,0,0,0.584511715822624,0.395287777946524,59.4444435380343,0.141940085208269,1.24645922567079,4.39794790254655,0.164970122972535,0,0,0,0.188605079755898,0,0,0.258428293168221,0,0.356497378384721,0.316036757935816,0,1.03135543248187,2.38307724027652,0.720244376125241,0.388076051348264,0.428674070063185,0.709360934569094,0.713475270408282,0.822745103010605,1.2178597964584,0.704015124191131,0,0,0,0,0,0,0,0,8.52956389248344,0.341741761595705,0,0,0.753473828018764,1.0935538217682,1.60144721244566,0,0,0,0,0.474503990371703,0.203319467126849,0.108005340821801,0,0,0,0,0.26175594198403,0,0,0,0,0.330916980914195,0.194451188344048,0,0,0,0.13020438484395,0.314578033277133,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0.0974578807397524,0,0,0.226730383615211,0.665957860122194,1.25599399253266,0.335769232728157,0.19318959403219,0,0,0,0,278.987410252831,266.988637174163,268.115100289638,265.685019903341,164.419804744954,196.402413321322,205.881862570701,213.001929125056,163.131267234314,175.520745683867,0.103787347584177,1.19707462020309,0.341467211508268,0.243106717068294,0.209613162627982,0.551530525350042,2.00022055021454,1.44224540067226,0.320919209591815,1.01078884705519,0.760437899670719,1.69763707247469,1.03005658216871,0.960377286073039,0.976402972245426,0.952587382566147,1.0429589335037,0.578727661391115,1.23625770240992,0.588795680537589,0,0.354951612318675,0.715308569841963,1.45346416632329,0.846984423737976,0.930760686808441,0.914639864363863,1.57841826862706,1.35804113845862,2.24456908663095,0.711810108745045,1.47756723563345,0.409231043169689,0.929621047115796,0.385813221962283,3.49734809113124,1.16965804222704,2.79332370262788,0.765153328275374,0.882365676478062,0 | |||
|short_description=p1@Prkcc | |||
}} |
Latest revision as of 16:13, 26 September 2015
Short description: | p1@Prkcc |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Prkcc_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000100301, NM_011102, uc009eut.1, uc012ewe.1_5end |
EntrezGene: | Prkcc |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.98e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.98e-12 | 23 |
neural cell | 5.25e-09 | 43 |
ectodermal cell | 1.17e-08 | 44 |
neurectodermal cell | 1.17e-08 | 44 |
neuron | 4.78e-07 | 33 |
neuronal stem cell | 4.78e-07 | 33 |
neuroblast | 4.78e-07 | 33 |
electrically signaling cell | 4.78e-07 | 33 |