FFCP PHASE1:Mm9::chr7:29680031..29680053,-: Difference between revisions
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{{FFCP|EntrezGene=60595|HGNC=|MCL_coexpression_id=70|UniProt=|association_with_transcript=-160bp_to_ENSMUST00000129338_5end|description=CAGE_peak_3_at_Actn4_5end|id=chr7:29680031..29680053,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002453,2.13e-07,8;CL:0000764,2.45e-07,3;CL:0000765,2.45e-07,3;CL:0000038,2.45e-07,3;CL:0000547,2.45e-07,3;CL:0002494,8.78e-07,3;CL:0000737,8.78e-07,3;CL:0000746,8.78e-07,3;CL:0000513,8.78e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:2531,2.45e-07,3;DOID:0060083,2.45e-07,3;DOID:1240,2.45e-07,3|ontology_enrichment_uberon=UBERON:0003914!1.31e-16!47;UBERON:0000991!8.18e-13!18;UBERON:0005564!8.18e-13!18;UBERON:0004176!4.85e-12!17;UBERON:0009196!4.85e-12!17;UBERON:0009117!4.85e-12!17;UBERON:0000473!3.56e-10!14;UBERON:0007100!3.92e-10!18;UBERON:0000948!3.92e-10!18;UBERON:0005498!3.92e-10!18;UBERON:0004140!3.92e-10!18;UBERON:0009881!3.92e-10!18;UBERON:0004141!3.92e-10!18;UBERON:0003084!3.92e-10!18;UBERON:0007005!3.92e-10!18;UBERON:0004139!3.92e-10!18;UBERON:0004291!3.92e-10!18;UBERON:0000466!5.65e-10!79;UBERON:0004535!3.55e-09!23;UBERON:0001009!3.55e-09!23;UBERON:0003135!4.13e-09!15;UBERON:0001048!4.30e-09!147;UBERON:0002107!8.42e-09!22;UBERON:0007499!8.42e-09!22;UBERON:0006925!8.42e-09!22;UBERON:0009497!8.42e-09!22;UBERON:0000015!8.42e-09!22;UBERON:0002423!8.42e-09!22;UBERON:0006235!8.42e-09!22;UBERON:0008835!8.42e-09!22;UBERON:0003894!8.42e-09!22;UBERON:0004161!8.42e-09!22;UBERON:0008836!8.42e-09!22;UBERON:0005172!9.71e-09!49;UBERON:0005173!9.71e-09!49;UBERON:0002417!9.71e-09!49;UBERON:0000916!9.71e-09!49;UBERON:0003133!1.65e-08!24;UBERON:0005256!2.78e-08!47;UBERON:0003101!3.44e-08!16;UBERON:0000079!3.44e-08!16;UBERON:0009854!4.10e-08!23;UBERON:0009856!4.10e-08!23;UBERON:0004872!1.42e-07!33;UBERON:0000926!2.56e-07!193;UBERON:0004120!2.56e-07!193;UBERON:0006603!2.56e-07!193;UBERON:0005156!2.65e-07!26;UBERON:0000990!2.65e-07!26;UBERON:0002365!6.35e-07!25;UBERON:0002330!6.35e-07!25;UBERON:0002323!7.98e-07!37;UBERON:0004458!7.98e-07!37|ontology_enrichment_uberon_v019_2=UBERON:0000991,5.58e-23,18;UBERON:0005564,5.58e-23,18;UBERON:0004176,2.89e-21,17;UBERON:0009196,2.89e-21,17;UBERON:0009117,2.89e-21,17;UBERON:0000473,4.41e-17,14;UBERON:0003133,3.26e-16,24;UBERON:0003135,9.42e-16,15;UBERON:0005156,1.17e-14,26;UBERON:0000990,1.17e-14,26;UBERON:0003101,1.37e-14,16;UBERON:0000079,1.37e-14,16;UBERON:0003914,1.14e-10,47;UBERON:0002323,2.27e-10,37;UBERON:0004458,2.27e-10,37;UBERON:0001048,2.56e-10,134;UBERON:0003886,5.45e-10,38;UBERON:0002553,1.25e-09,39;UBERON:0002107,3.99e-09,22;UBERON:0007499,3.99e-09,22;UBERON:0006925,3.99e-09,22;UBERON:0009497,3.99e-09,22;UBERON:0000015,3.99e-09,22;UBERON:0002423,3.99e-09,22;UBERON:0006235,3.99e-09,22;UBERON:0008835,3.99e-09,22;UBERON:0003894,3.99e-09,22;UBERON:0004161,3.99e-09,22;UBERON:0008836,3.99e-09,22;UBERON:0009854,1.28e-08,23;UBERON:0009856,1.28e-08,23;UBERON:0002365,9.99e-08,25;UBERON:0002330,9.99e-08,25|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25216450755349,0,0,0,0,0,0,0,0,0,0,8.25539875497521,8.61090702618398,31.6963362030877,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,2.34717403304412,0.872100625521786,1.31811709640683,1.36100929351998,0.419959264876088,1.43752564364972,0,0,0,4.11615097657515,4.29800159908135,12.8918023069361,0.606949382578793,0,0,0.338844532069132,0,0,0,0,1.79760066311043,4.61061966385865,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0,0,0,0,0.0755715601067855,3.76823835312181,3.44169550792555,0,0,0.649776417447669,1.34408066129201,1.68533304158102,0,0,0,0.563373679106722,0,0,0,0,0,0,1.1418387971906,0,0.445326417194474,0.693941307064543,0.304465478312141,0.230615497256059,0.150722640552623,1.52865319276416,0.251333182659351,0,0.144599356919912,0,0,0,0.484875253135222,0,0,0,0,0,0,0,0,0,0,0,0.255715457330331,0,0.162241263067758,0.81471491080253,0.373220911830279,0,0,0.260240885925407,0,0,0.150704817835715,0,0,0,0,0,0.567318240503458,0,0,0,0,0,4.57778813682534,0,0,0,4.34964122324554,1.87620847984877,1.44049649168812,1.89395788468168,0.196764231747404,0.617068451549513,0.232533944750408,0.268273401399619,0.233530684734339,0.493679549740441,0.820837320395476,0.810688095458557,1.46199987425332,0.878200461164203,0.536825675041487,0,0.102904612379284,0,0,0.639864751605702,0.928946687441754,0,0.201683524623343,0.444756087689741,0.190225626112559,0,0,0,0.397912944082302,0,0,0,0,0,0.114248512609729,0,0,0,0.140271639780637,0.316182685621286,0.442830443938806,0.31399745568275,0.123397163921801,1.77871576252289,1.00107063429656,0,0.224862112384854,0.405720242777006,0.241177159752417,0.25462585178142,0.863088412352432,1.13494658742525,0.823684239564244,1.43768206527355,5.20997326735905,3.12037673114561,2.77836765741823,1.79397413521912,1.92977408545347,0.184753190166605,0.568474235311454,0.325929952884052,0,0.234690248288502,0,0,0,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0,0,0,0.234423373184406,0,0,0,0.390438744296638,0.215423397732799,0,0.445597348164788,0,0,0,0,0,1.41940085208269,3.5613120733451,1.14020871547503,0,0,0,0,0,0,0,0,0.363533729477506,0.712994756769443,0.316036757935816,1.05418608574999,0,0.340439605753788,0,0,0,0.177340233642274,0.178368817602071,0.822745103010605,0.304464949114599,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0.185194527369712,0.188368457004691,0.27338845544205,0,0,0,0,0,0.474503990371703,0.203319467126849,0,0,0,0,0.247960367176008,0,0,0,20.856638731315,7.7748603942869,6.45288112782681,6.41688921535357,7.10379029127521,12.3337971608268,14.4349403534277,24.2180155809747,20.1329941297365,28.5069262574687,15.2655903316669,0,0,0.102710957164827,0.129920822977795,0,0,0.120195449519969,0,0,0.0762068066549998,0,0,0,0,0,0.221985953374065,0,0,0,0,0.183151624267265,0,0,0,0.920650473014354,0,0,0,0,0,0,0,0,0.207574695168353,0,0.170733605754134,0,0.209613162627982,0,0.222246727801615,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0.0574354689556133,0.476293691283074,0.231768651889711,0,0,0,0,0,0,0.145346416632329,0.0941093804153306,0,0,0,0,0,0.118635018124174,0,0,0.154936841185966,0.192906610981141,0,0,0.859484216193193,0,0,0|short_description=p3@Actn4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=60595 | |||
|HGNC= | |||
|MCL_coexpression_id=70 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-160bp_to_ENSMUST00000129338_5end | |||
|cluster_id=chr7:29680031..29680053,- | |||
|description=CAGE_peak_3_at_Actn4_5end | |||
|id=chr7:29680031..29680053,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002453,2.13e-07,8;CL:0000764,2.45e-07,3;CL:0000765,2.45e-07,3;CL:0000038,2.45e-07,3;CL:0000547,2.45e-07,3;CL:0002494,8.78e-07,3;CL:0000737,8.78e-07,3;CL:0000746,8.78e-07,3;CL:0000513,8.78e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.45e-07,3;DOID:0060083,2.45e-07,3;DOID:1240,2.45e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0003914!1.31e-16!47;UBERON:0000991!8.18e-13!18;UBERON:0005564!8.18e-13!18;UBERON:0004176!4.85e-12!17;UBERON:0009196!4.85e-12!17;UBERON:0009117!4.85e-12!17;UBERON:0000473!3.56e-10!14;UBERON:0007100!3.92e-10!18;UBERON:0000948!3.92e-10!18;UBERON:0005498!3.92e-10!18;UBERON:0004140!3.92e-10!18;UBERON:0009881!3.92e-10!18;UBERON:0004141!3.92e-10!18;UBERON:0003084!3.92e-10!18;UBERON:0007005!3.92e-10!18;UBERON:0004139!3.92e-10!18;UBERON:0004291!3.92e-10!18;UBERON:0000466!5.65e-10!79;UBERON:0004535!3.55e-09!23;UBERON:0001009!3.55e-09!23;UBERON:0003135!4.13e-09!15;UBERON:0001048!4.30e-09!147;UBERON:0002107!8.42e-09!22;UBERON:0007499!8.42e-09!22;UBERON:0006925!8.42e-09!22;UBERON:0009497!8.42e-09!22;UBERON:0000015!8.42e-09!22;UBERON:0002423!8.42e-09!22;UBERON:0006235!8.42e-09!22;UBERON:0008835!8.42e-09!22;UBERON:0003894!8.42e-09!22;UBERON:0004161!8.42e-09!22;UBERON:0008836!8.42e-09!22;UBERON:0005172!9.71e-09!49;UBERON:0005173!9.71e-09!49;UBERON:0002417!9.71e-09!49;UBERON:0000916!9.71e-09!49;UBERON:0003133!1.65e-08!24;UBERON:0005256!2.78e-08!47;UBERON:0003101!3.44e-08!16;UBERON:0000079!3.44e-08!16;UBERON:0009854!4.10e-08!23;UBERON:0009856!4.10e-08!23;UBERON:0004872!1.42e-07!33;UBERON:0000926!2.56e-07!193;UBERON:0004120!2.56e-07!193;UBERON:0006603!2.56e-07!193;UBERON:0005156!2.65e-07!26;UBERON:0000990!2.65e-07!26;UBERON:0002365!6.35e-07!25;UBERON:0002330!6.35e-07!25;UBERON:0002323!7.98e-07!37;UBERON:0004458!7.98e-07!37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000991,5.58e-23,18;UBERON:0005564,5.58e-23,18;UBERON:0004176,2.89e-21,17;UBERON:0009196,2.89e-21,17;UBERON:0009117,2.89e-21,17;UBERON:0000473,4.41e-17,14;UBERON:0003133,3.26e-16,24;UBERON:0003135,9.42e-16,15;UBERON:0005156,1.17e-14,26;UBERON:0000990,1.17e-14,26;UBERON:0003101,1.37e-14,16;UBERON:0000079,1.37e-14,16;UBERON:0003914,1.14e-10,47;UBERON:0002323,2.27e-10,37;UBERON:0004458,2.27e-10,37;UBERON:0001048,2.56e-10,134;UBERON:0003886,5.45e-10,38;UBERON:0002553,1.25e-09,39;UBERON:0002107,3.99e-09,22;UBERON:0007499,3.99e-09,22;UBERON:0006925,3.99e-09,22;UBERON:0009497,3.99e-09,22;UBERON:0000015,3.99e-09,22;UBERON:0002423,3.99e-09,22;UBERON:0006235,3.99e-09,22;UBERON:0008835,3.99e-09,22;UBERON:0003894,3.99e-09,22;UBERON:0004161,3.99e-09,22;UBERON:0008836,3.99e-09,22;UBERON:0009854,1.28e-08,23;UBERON:0009856,1.28e-08,23;UBERON:0002365,9.99e-08,25;UBERON:0002330,9.99e-08,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25216450755349,0,0,0,0,0,0,0,0,0,0,8.25539875497521,8.61090702618398,31.6963362030877,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,2.34717403304412,0.872100625521786,1.31811709640683,1.36100929351998,0.419959264876088,1.43752564364972,0,0,0,4.11615097657515,4.29800159908135,12.8918023069361,0.606949382578793,0,0,0.338844532069132,0,0,0,0,1.79760066311043,4.61061966385865,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0,0,0,0,0.0755715601067855,3.76823835312181,3.44169550792555,0,0,0.649776417447669,1.34408066129201,1.68533304158102,0,0,0,0.563373679106722,0,0,0,0,0,0,1.1418387971906,0,0.445326417194474,0.693941307064543,0.304465478312141,0.230615497256059,0.150722640552623,1.52865319276416,0.251333182659351,0,0.144599356919912,0,0,0,0.484875253135222,0,0,0,0,0,0,0,0,0,0,0,0.255715457330331,0,0.162241263067758,0.81471491080253,0.373220911830279,0,0,0.260240885925407,0,0,0.150704817835715,0,0,0,0,0,0.567318240503458,0,0,0,0,0,4.57778813682534,0,0,0,4.34964122324554,1.87620847984877,1.44049649168812,1.89395788468168,0.196764231747404,0.617068451549513,0.232533944750408,0.268273401399619,0.233530684734339,0.493679549740441,0.820837320395476,0.810688095458557,1.46199987425332,0.878200461164203,0.536825675041487,0,0.102904612379284,0,0,0.639864751605702,0.928946687441754,0,0.201683524623343,0.444756087689741,0.190225626112559,0,0,0,0.397912944082302,0,0,0,0,0,0.114248512609729,0,0,0,0.140271639780637,0.316182685621286,0.442830443938806,0.31399745568275,0.123397163921801,1.77871576252289,1.00107063429656,0,0.224862112384854,0.405720242777006,0.241177159752417,0.25462585178142,0.863088412352432,1.13494658742525,0.823684239564244,1.43768206527355,5.20997326735905,3.12037673114561,2.77836765741823,1.79397413521912,1.92977408545347,0.184753190166605,0.568474235311454,0.325929952884052,0,0.234690248288502,0,0,0,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0,0,0,0.234423373184406,0,0,0,0.390438744296638,0.215423397732799,0,0.445597348164788,0,0,0,0,0,1.41940085208269,3.5613120733451,1.14020871547503,0,0,0,0,0,0,0,0,0.363533729477506,0.712994756769443,0.316036757935816,1.05418608574999,0,0.340439605753788,0,0,0,0.177340233642274,0.178368817602071,0.822745103010605,0.304464949114599,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0.185194527369712,0.188368457004691,0.27338845544205,0,0,0,0,0,0.474503990371703,0.203319467126849,0,0,0,0,0.247960367176008,0,0,0,20.856638731315,7.7748603942869,6.45288112782681,6.41688921535357,7.10379029127521,12.3337971608268,14.4349403534277,24.2180155809747,20.1329941297365,28.5069262574687,15.2655903316669,0,0,0.102710957164827,0.129920822977795,0,0,0.120195449519969,0,0,0.0762068066549998,0,0,0,0,0,0.221985953374065,0,0,0,0,0.183151624267265,0,0,0,0.920650473014354,0,0,0,0,0,0,0,0,0.207574695168353,0,0.170733605754134,0,0.209613162627982,0,0.222246727801615,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0.0574354689556133,0.476293691283074,0.231768651889711,0,0,0,0,0,0,0.145346416632329,0.0941093804153306,0,0,0,0,0,0.118635018124174,0,0,0.154936841185966,0.192906610981141,0,0,0.859484216193193,0,0,0 | |||
|short_description=p3@Actn4 | |||
}} |
Latest revision as of 13:28, 26 September 2015
Short description: | p3@Actn4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Actn4_5end |
Coexpression cluster: | MCL_coexpression_mm9:70 |
Association with transcript: | -160bp_to_ENSMUST00000129338_5end |
EntrezGene: | Actn4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte precursor cell | 2.13e-07 | 8 |
erythroid lineage cell | 2.45e-07 | 3 |
erythroblast | 2.45e-07 | 3 |
erythroid progenitor cell | 2.45e-07 | 3 |
proerythroblast | 2.45e-07 | 3 |
cardiocyte | 8.78e-07 | 3 |
striated muscle cell | 8.78e-07 | 3 |
cardiac muscle cell | 8.78e-07 | 3 |
cardiac muscle myoblast | 8.78e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gonad | 5.58e-23 | 18 |
gonad primordium | 5.58e-23 | 18 |
external genitalia | 2.89e-21 | 17 |
indifferent external genitalia | 2.89e-21 | 17 |
indifferent gonad | 2.89e-21 | 17 |
testis | 4.41e-17 | 14 |
reproductive organ | 3.26e-16 | 24 |
male reproductive organ | 9.42e-16 | 15 |
reproductive structure | 1.17e-14 | 26 |
reproductive system | 1.17e-14 | 26 |
male organism | 1.37e-14 | 16 |
male reproductive system | 1.37e-14 | 16 |
epithelial tube | 1.14e-10 | 47 |
body cavity | 2.27e-10 | 37 |
body cavity or lining | 2.27e-10 | 37 |
primordium | 2.56e-10 | 134 |
body cavity precursor | 5.45e-10 | 38 |
anatomical cavity | 1.25e-09 | 39 |
liver | 3.99e-09 | 22 |
epithelial sac | 3.99e-09 | 22 |
digestive gland | 3.99e-09 | 22 |
epithelium of foregut-midgut junction | 3.99e-09 | 22 |
anatomical boundary | 3.99e-09 | 22 |
hepatobiliary system | 3.99e-09 | 22 |
foregut-midgut junction | 3.99e-09 | 22 |
hepatic diverticulum | 3.99e-09 | 22 |
liver primordium | 3.99e-09 | 22 |
septum transversum | 3.99e-09 | 22 |
liver bud | 3.99e-09 | 22 |
digestive tract diverticulum | 1.28e-08 | 23 |
sac | 1.28e-08 | 23 |
exocrine gland | 9.99e-08 | 25 |
exocrine system | 9.99e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.45e-07 | 3 |
immune system cancer | 2.45e-07 | 3 |
leukemia | 2.45e-07 | 3 |