FFCP PHASE1:Hg19::chrX:77041685..77041716,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=546 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=886 | |||
|TSSclassifier=strong | |||
|UniProt=P46100,F8WDE0 | |||
|association_with_transcript=0bp_to_ENST00000373344,ENST00000395603,ENST00000400862,ENST00000480283_5end | |||
|cluster_id=chrX:77041685..77041716,- | |||
|coexpression_cluster_id=C986 | |||
|description=CAGE_peak_1_at_ATRX_5end | |||
|id=chrX:77041685..77041716,- | |||
|ontology_enrichment_celltype=CL:0000838!6.81e-10!52;CL:0000542!8.76e-10!53;CL:0000051!8.76e-10!53;CL:0000738!1.58e-08!140 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,6.81e-10,52;CL:0000542,8.76e-10,53;CL:0000051,8.76e-10,53;CL:0000738,1.50e-07,136 | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.76e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.41e-20!115;UBERON:0001017!4.42e-18!82;UBERON:0000073!1.25e-17!94;UBERON:0001016!1.25e-17!94;UBERON:0005743!1.31e-16!86;UBERON:0001049!5.02e-16!57;UBERON:0005068!5.02e-16!57;UBERON:0006241!5.02e-16!57;UBERON:0007135!5.02e-16!57;UBERON:0000955!1.62e-15!69;UBERON:0006238!1.62e-15!69;UBERON:0003080!1.91e-14!42;UBERON:0002780!3.47e-14!41;UBERON:0001890!3.47e-14!41;UBERON:0006240!3.47e-14!41;UBERON:0002616!1.07e-13!59;UBERON:0002020!2.74e-12!34;UBERON:0003528!2.74e-12!34;UBERON:0002346!6.27e-12!90;UBERON:0003075!3.33e-11!86;UBERON:0007284!3.33e-11!86;UBERON:0002791!4.91e-11!33;UBERON:0001893!5.19e-11!34;UBERON:0001869!5.97e-11!32;UBERON:0000153!3.79e-09!129;UBERON:0007811!3.79e-09!129;UBERON:0000956!5.22e-09!25;UBERON:0000203!5.22e-09!25;UBERON:0000924!5.82e-09!173;UBERON:0006601!5.82e-09!173;UBERON:0002619!1.38e-08!22;UBERON:0003056!2.04e-08!61;UBERON:0004121!2.29e-08!169;UBERON:0000033!3.42e-08!123;UBERON:0001950!1.11e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;1.16e-10;32!UBERON:0003528;1.54e-10;34!UBERON:0002020;1.54e-10;34!UBERON:0002780;1.59e-10;41!UBERON:0001890;1.59e-10;41!UBERON:0001869;3.67e-10;32!UBERON:0001893;2.02e-09;34!UBERON:0000956;5.01e-09;25!UBERON:0000203;5.01e-09;25!UBERON:0000073;5.86e-09;53!UBERON:0002616;5.86e-09;53!UBERON:0002619;1.32e-08;22!UBERON:0001016;5.48e-08;83!UBERON:0001017;8.25e-08;75!UBERON:0001950;1.08e-07;20!UBERON:0000955;1.25e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.04e-20,114;UBERON:0001016,8.80e-19,89;UBERON:0001017,8.31e-18,81;UBERON:0001049,9.30e-16,56;UBERON:0005068,9.30e-16,56;UBERON:0006241,9.30e-16,56;UBERON:0007135,9.30e-16,56;UBERON:0000955,2.99e-15,68;UBERON:0006238,2.99e-15,68;UBERON:0000073,1.41e-14,53;UBERON:0002616,1.41e-14,53;UBERON:0002780,3.47e-14,41;UBERON:0001890,3.47e-14,41;UBERON:0003080,3.47e-14,41;UBERON:0006240,3.47e-14,41;UBERON:0003528,2.74e-12,34;UBERON:0002020,2.74e-12,34;UBERON:0002791,1.85e-11,32;UBERON:0002346,4.15e-11,86;UBERON:0001893,5.19e-11,34;UBERON:0001869,5.97e-11,32;UBERON:0003075,2.15e-10,82;UBERON:0007284,2.15e-10,82;UBERON:0011216,1.25e-09,223;UBERON:0000956,5.22e-09,25;UBERON:0000203,5.22e-09,25;UBERON:0002619,1.38e-08,22;UBERON:0003056,1.63e-08,61;UBERON:0004121,3.12e-08,171;UBERON:0000924,3.12e-08,171;UBERON:0006601,3.12e-08,171;UBERON:0001950,1.11e-07,20 | |||
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| |||
|short_description=p1@ATRX | |||
}} |
Latest revision as of 11:26, 16 September 2015
Short description: | p1@ATRX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ATRX_5end |
Coexpression cluster: | C986_cerebellum_CD4_granulocyte_Mast_pineal_non_pituitary |
Association with transcript: | 0bp_to_ENST00000373344, ENST00000395603, ENST00000400862, ENST00000480283_5end |
EntrezGene: | ATRX |
HGNC: | 886 |
UniProt: | P46100F8WDE0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 6.81e-10 | 52 |
lymphocyte | 8.76e-10 | 53 |
common lymphoid progenitor | 8.76e-10 | 53 |
leukocyte | 1.50e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
adult organism | 8.04e-20 | 114 |
nervous system | 8.80e-19 | 89 |
central nervous system | 8.31e-18 | 81 |
neural tube | 9.30e-16 | 56 |
neural rod | 9.30e-16 | 56 |
future spinal cord | 9.30e-16 | 56 |
neural keel | 9.30e-16 | 56 |
brain | 2.99e-15 | 68 |
future brain | 2.99e-15 | 68 |
regional part of nervous system | 1.41e-14 | 53 |
regional part of brain | 1.41e-14 | 53 |
regional part of forebrain | 3.47e-14 | 41 |
forebrain | 3.47e-14 | 41 |
anterior neural tube | 3.47e-14 | 41 |
future forebrain | 3.47e-14 | 41 |
brain grey matter | 2.74e-12 | 34 |
gray matter | 2.74e-12 | 34 |
regional part of telencephalon | 1.85e-11 | 32 |
neurectoderm | 4.15e-11 | 86 |
telencephalon | 5.19e-11 | 34 |
cerebral hemisphere | 5.97e-11 | 32 |
neural plate | 2.15e-10 | 82 |
presumptive neural plate | 2.15e-10 | 82 |
organ system subdivision | 1.25e-09 | 223 |
cerebral cortex | 5.22e-09 | 25 |
pallium | 5.22e-09 | 25 |
regional part of cerebral cortex | 1.38e-08 | 22 |
pre-chordal neural plate | 1.63e-08 | 61 |
ectoderm-derived structure | 3.12e-08 | 171 |
ectoderm | 3.12e-08 | 171 |
presumptive ectoderm | 3.12e-08 | 171 |
neocortex | 1.11e-07 | 20 |