FFCP PHASE1:Mm9::chr7:16858609..16858680,-: Difference between revisions
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{{FFCP|EntrezGene=66300|HGNC=|MCL_coexpression_id=159|UniProt=E9PV59|association_with_transcript=360bp_to_ENSMUST00000169612,NM_001136270,uc012fag.1_5end|description=CAGE_peak_1_at_Prr24_5end|id=chr7:16858609..16858680,-|ontology_enrichment_celltype=CL:0000117!6.89e-13!23;CL:0000337!6.89e-13!23;CL:0000393!6.60e-09!39;CL:0000211!6.60e-09!39;CL:0000540!1.30e-08!33;CL:0000047!1.30e-08!33;CL:0000031!1.30e-08!33;CL:0000404!1.30e-08!33;CL:0000221!3.06e-08!44;CL:0000133!3.06e-08!44;CL:0000055!5.89e-08!50;CL:0002319!7.86e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,6.84e-13,23;CL:0000337,6.84e-13,23;CL:0000393,6.57e-09,39;CL:0000211,6.57e-09,39;CL:0000540,1.29e-08,33;CL:0000047,1.29e-08,33;CL:0000031,1.29e-08,33;CL:0000404,1.29e-08,33;CL:0000221,3.37e-08,44;CL:0000133,3.37e-08,44;CL:0002319,8.62e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.46e-20!73;UBERON:0005743!5.46e-20!73;UBERON:0001049!3.42e-19!52;UBERON:0005068!3.42e-19!52;UBERON:0006241!3.42e-19!52;UBERON:0007135!3.42e-19!52;UBERON:0002346!5.71e-19!71;UBERON:0003075!5.71e-19!71;UBERON:0007284!5.71e-19!71;UBERON:0004121!1.01e-18!102;UBERON:0000924!1.01e-18!102;UBERON:0006601!1.01e-18!102;UBERON:0000073!3.18e-18!75;UBERON:0001016!3.18e-18!75;UBERON:0000955!2.71e-17!50;UBERON:0006238!2.71e-17!50;UBERON:0002616!4.33e-17!49;UBERON:0000033!5.02e-17!63;UBERON:0003080!1.95e-13!40;UBERON:0002020!4.69e-13!34;UBERON:0002780!6.99e-13!39;UBERON:0001890!6.99e-13!39;UBERON:0006240!6.99e-13!39;UBERON:0003056!1.60e-12!49;UBERON:0002791!7.52e-10!29;UBERON:0003528!7.52e-10!29;UBERON:0001893!7.52e-10!29|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.38e-20,54;UBERON:0001017,5.39e-20,73;UBERON:0001049,3.38e-19,52;UBERON:0005068,3.38e-19,52;UBERON:0006241,3.38e-19,52;UBERON:0007135,3.38e-19,52;UBERON:0001016,3.56e-18,75;UBERON:0002346,9.09e-17,64;UBERON:0003075,9.09e-17,64;UBERON:0007284,9.09e-17,64;UBERON:0004121,2.22e-16,95;UBERON:0000924,2.22e-16,95;UBERON:0006601,2.22e-16,95;UBERON:0010371,7.67e-16,73;UBERON:0000955,2.04e-15,47;UBERON:0006238,2.04e-15,47;UBERON:0002616,3.24e-15,46;UBERON:0003080,1.93e-13,40;UBERON:0002020,4.65e-13,34;UBERON:0002780,6.94e-13,39;UBERON:0001890,6.94e-13,39;UBERON:0006240,6.94e-13,39;UBERON:0003056,1.59e-12,49;UBERON:0010314,3.29e-12,92;UBERON:0003528,7.48e-10,29;UBERON:0002791,7.48e-10,29;UBERON:0001893,7.48e-10,29|phase1_expression=13.9329496981171,3.14077866875425,5.91499011206397,9.67885476181856,9.5170188689806,4.36486106970913,6.54115393667472,0.258246646883153,1.83025338797167,0.468129052643987,0.68487187290202,0.319088635981346,1.88320802924326,0.786783621770977,1.33243904726265,2.42970320867791,2.09868563438444,0.473193248037357,1.37114433605739,0.42438965179803,6.71841992193451,3.17731043842833,0.783599367416806,5.43974237497583,4.35877634027623,6.89078356938024,4.30761996159075,3.66301095566011,8.36103045608045,8.82105454159758,6.20845429834853,10.1604907753541,11.6862309641068,0,5.48818077527422,4.65457007003779,7.55426618170766,4.18531630736908,0.7813353445238,2.09409497589519,2.35292595212406,1.36609096991689,1.94204141212461,9.06457089424156,7.60326984146359,4.40512205188036,35.9900018400098,2.8343270329458,9.88587822305123,8.55491555926847,6.29938897314131,2.87505128729943,1.17447824240415,1.45072428402269,0.336093799142464,12.3484529297255,6.5902691185914,7.73508138416164,20.8385954685386,29.0945038599618,27.2547503507657,21.6860500524245,21.3430751066673,8.99899717281399,11.8663963508037,12.0781619540837,15.8788058574755,29.9690278150813,9.53944433237994,14.1756235248275,10.5162480675691,50.845875223877,48.3702104684034,9.0643191419066,5.271500906003,15.6267193723704,29.731287869835,19.7915374032041,25.0378649207677,19.7829431595291,12.5338071735301,15.106487746146,29.5933978941464,42.7699583624077,33.4628162631214,33.2930301585245,38.725097177356,29.6375118862228,0.984440513331393,1.81371744256285,7.24661221754194,4.30211938490693,1.3599426674155,1.07940638327563,3.24888208723835,1.79210754838934,3.65155492342555,5.79463096765396,6.75443611967459,6.00677276667578,14.7885590765515,12.8326477414318,5.09610479413291,0,0.432982082022428,1.01343946190039,0.505524445014783,3.88225191044804,0.776813650941515,13.9535610720935,9.36820764537134,8.52503339273995,8.76338889573022,7.38540938707851,11.9940481278419,15.2056575508907,4.94389935468748,6.36237170447611,3.5384422077995,5.82360659810673,3.5334642953663,4.84875253135222,14.9113408974498,9.9545470983926,15.4990563041957,6.38642638021478,3.83408398418945,2.99951365496704,3.30382590389968,17.8250860891739,9.60751265919116,17.591609295801,10.4294592115366,7.16003280524926,18.0775598766817,15.8996437806402,12.8317598451399,7.34001126599549,14.6579199891531,3.36706969418358,5.98554037628437,7.35686734187113,8.46292010085141,6.48030716693575,8.09634339900802,6.40568601424249,7.77724313845749,5.95017752699736,3.66465587985832,5.29497024469894,7.2139960907219,12.2749610159442,9.73165372289593,4.8755303313103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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66300 | |||
|HGNC= | |||
|MCL_coexpression_id=159 | |||
|TSSclassifier=NA | |||
|UniProt=E9PV59 | |||
|association_with_transcript=360bp_to_ENSMUST00000169612,NM_001136270,uc012fag.1_5end | |||
|cluster_id=chr7:16858609..16858680,- | |||
|description=CAGE_peak_1_at_Prr24_5end | |||
|id=chr7:16858609..16858680,- | |||
|ontology_enrichment_celltype=CL:0000117!6.89e-13!23;CL:0000337!6.89e-13!23;CL:0000393!6.60e-09!39;CL:0000211!6.60e-09!39;CL:0000540!1.30e-08!33;CL:0000047!1.30e-08!33;CL:0000031!1.30e-08!33;CL:0000404!1.30e-08!33;CL:0000221!3.06e-08!44;CL:0000133!3.06e-08!44;CL:0000055!5.89e-08!50;CL:0002319!7.86e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.84e-13,23;CL:0000337,6.84e-13,23;CL:0000393,6.57e-09,39;CL:0000211,6.57e-09,39;CL:0000540,1.29e-08,33;CL:0000047,1.29e-08,33;CL:0000031,1.29e-08,33;CL:0000404,1.29e-08,33;CL:0000221,3.37e-08,44;CL:0000133,3.37e-08,44;CL:0002319,8.62e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.46e-20!73;UBERON:0005743!5.46e-20!73;UBERON:0001049!3.42e-19!52;UBERON:0005068!3.42e-19!52;UBERON:0006241!3.42e-19!52;UBERON:0007135!3.42e-19!52;UBERON:0002346!5.71e-19!71;UBERON:0003075!5.71e-19!71;UBERON:0007284!5.71e-19!71;UBERON:0004121!1.01e-18!102;UBERON:0000924!1.01e-18!102;UBERON:0006601!1.01e-18!102;UBERON:0000073!3.18e-18!75;UBERON:0001016!3.18e-18!75;UBERON:0000955!2.71e-17!50;UBERON:0006238!2.71e-17!50;UBERON:0002616!4.33e-17!49;UBERON:0000033!5.02e-17!63;UBERON:0003080!1.95e-13!40;UBERON:0002020!4.69e-13!34;UBERON:0002780!6.99e-13!39;UBERON:0001890!6.99e-13!39;UBERON:0006240!6.99e-13!39;UBERON:0003056!1.60e-12!49;UBERON:0002791!7.52e-10!29;UBERON:0003528!7.52e-10!29;UBERON:0001893!7.52e-10!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.38e-20,54;UBERON:0001017,5.39e-20,73;UBERON:0001049,3.38e-19,52;UBERON:0005068,3.38e-19,52;UBERON:0006241,3.38e-19,52;UBERON:0007135,3.38e-19,52;UBERON:0001016,3.56e-18,75;UBERON:0002346,9.09e-17,64;UBERON:0003075,9.09e-17,64;UBERON:0007284,9.09e-17,64;UBERON:0004121,2.22e-16,95;UBERON:0000924,2.22e-16,95;UBERON:0006601,2.22e-16,95;UBERON:0010371,7.67e-16,73;UBERON:0000955,2.04e-15,47;UBERON:0006238,2.04e-15,47;UBERON:0002616,3.24e-15,46;UBERON:0003080,1.93e-13,40;UBERON:0002020,4.65e-13,34;UBERON:0002780,6.94e-13,39;UBERON:0001890,6.94e-13,39;UBERON:0006240,6.94e-13,39;UBERON:0003056,1.59e-12,49;UBERON:0010314,3.29e-12,92;UBERON:0003528,7.48e-10,29;UBERON:0002791,7.48e-10,29;UBERON:0001893,7.48e-10,29 | |||
|phase1_expression=13.9329496981171,3.14077866875425,5.91499011206397,9.67885476181856,9.5170188689806,4.36486106970913,6.54115393667472,0.258246646883153,1.83025338797167,0.468129052643987,0.68487187290202,0.319088635981346,1.88320802924326,0.786783621770977,1.33243904726265,2.42970320867791,2.09868563438444,0.473193248037357,1.37114433605739,0.42438965179803,6.71841992193451,3.17731043842833,0.783599367416806,5.43974237497583,4.35877634027623,6.89078356938024,4.30761996159075,3.66301095566011,8.36103045608045,8.82105454159758,6.20845429834853,10.1604907753541,11.6862309641068,0,5.48818077527422,4.65457007003779,7.55426618170766,4.18531630736908,0.7813353445238,2.09409497589519,2.35292595212406,1.36609096991689,1.94204141212461,9.06457089424156,7.60326984146359,4.40512205188036,35.9900018400098,2.8343270329458,9.88587822305123,8.55491555926847,6.29938897314131,2.87505128729943,1.17447824240415,1.45072428402269,0.336093799142464,12.3484529297255,6.5902691185914,7.73508138416164,20.8385954685386,29.0945038599618,27.2547503507657,21.6860500524245,21.3430751066673,8.99899717281399,11.8663963508037,12.0781619540837,15.8788058574755,29.9690278150813,9.53944433237994,14.1756235248275,10.5162480675691,50.845875223877,48.3702104684034,9.0643191419066,5.271500906003,15.6267193723704,29.731287869835,19.7915374032041,25.0378649207677,19.7829431595291,12.5338071735301,15.106487746146,29.5933978941464,42.7699583624077,33.4628162631214,33.2930301585245,38.725097177356,29.6375118862228,0.984440513331393,1.81371744256285,7.24661221754194,4.30211938490693,1.3599426674155,1.07940638327563,3.24888208723835,1.79210754838934,3.65155492342555,5.79463096765396,6.75443611967459,6.00677276667578,14.7885590765515,12.8326477414318,5.09610479413291,0,0.432982082022428,1.01343946190039,0.505524445014783,3.88225191044804,0.776813650941515,13.9535610720935,9.36820764537134,8.52503339273995,8.76338889573022,7.38540938707851,11.9940481278419,15.2056575508907,4.94389935468748,6.36237170447611,3.5384422077995,5.82360659810673,3.5334642953663,4.84875253135222,14.9113408974498,9.9545470983926,15.4990563041957,6.38642638021478,3.83408398418945,2.99951365496704,3.30382590389968,17.8250860891739,9.60751265919116,17.591609295801,10.4294592115366,7.16003280524926,18.0775598766817,15.8996437806402,12.8317598451399,7.34001126599549,14.6579199891531,3.36706969418358,5.98554037628437,7.35686734187113,8.46292010085141,6.48030716693575,8.09634339900802,6.40568601424249,7.77724313845749,5.95017752699736,3.66465587985832,5.29497024469894,7.2139960907219,12.2749610159442,9.73165372289593,4.87553033131033,7.20237477427802,10.3497818745616,1.40442637462647,0.772043721344145,2.55747149456033,4.14251545071004,5.15957331958412,3.96136535214233,3.55117103377815,2.75469924446365,4.16521204795921,2.79040733700489,1.87791380979733,2.6856028744449,3.29119699826961,3.77585167381919,2.10778904819225,1.60819986167866,1.75640092232841,3.22095405024892,10.3042074796422,19.9634948015812,7.93005079161115,3.43785736662608,5.33220626338085,4.64473343720877,4.51036114627327,8.87407508342707,7.56085349072559,10.2721838100782,7.59246498471219,8.89374355509659,13.3207660664143,10.9426059622633,7.79856348476481,3.59527763461689,11.2391785934841,7.36822711041159,10.8110703543257,6.39791670614481,4.50830942692322,7.33144780243131,7.37019451236978,8.27602674705759,6.70307293517127,5.31396532726568,6.27994911365499,8.02081565491703,2.37162101669719,2.33583148002532,2.94838492669805,3.59779379815766,2.43432145666204,3.85883455603867,5.34714288740982,6.04161888646702,7.62035565842666,4.11842119782122,0,4.09355042435354,5.61667811606209,3.03094653536534,1.97337154874103,3.37710464954357,3.51031061316549,7.76914788258988,5.21487924614483,4.41337223015489,6.10194645550105,5.02518772325447,4.28478553594825,7.21994497073856,4.57141917907954,5.75808193086815,4.14582398509466,2.94953966488328,3.7990696010497,2.4590339958857,1.50791283939272,0,1.47529281905711,3.58717770196152,18.3027672586083,17.2301179290539,9.50822683184717,3.28212205365685,5.67914794949262,3.51394869866975,4.09304455692318,3.34556317133573,6.23836287430704,3.11384183867716,5.26253912177363,5.84511715822624,5.13874111330481,8.9969968598106,7.80670468645477,16.3820355373875,14.3340524231147,4.94910368917606,3.98235415019888,6.31229654002952,4.53485335447127,4.52652191414155,7.38254732201932,4.61152721915891,5.42699415653264,9.45187696641514,3.56497378384721,3.47640433729398,3.16255825724996,1.03135543248187,11.5749465956288,5.40183282093931,8.66703181344455,9.00215547132688,8.51233121482913,14.6262430433698,12.8348236069654,19.790221692449,2.58138878870081,5.71946591332314,7.27743713581374,5.93590510589328,10.333723308538,4.46315644468353,5.96861720015682,5.74493149107714,7.86998258900597,17.0591277849669,3.41741761595705,10.1129565301979,4.07427960213366,2.26042148405629,2.46049609897845,2.97411625168479,4.58941760983409,6.43776680688827,6.21899882119907,16.2294005062569,9.17374381385292,5.28630614529807,6.48032044930808,9.6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| |||
|short_description=p1@Prr24 | |||
}} |
Latest revision as of 06:56, 26 September 2015
Short description: | p1@Prr24 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Prr24_5end |
Coexpression cluster: | MCL_coexpression_mm9:159 |
Association with transcript: | 360bp_to_ENSMUST00000169612, NM_001136270, uc012fag.1_5end |
EntrezGene: | Prr24 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.84e-13 | 23 |
neuroblast (sensu Vertebrata) | 6.84e-13 | 23 |
electrically responsive cell | 6.57e-09 | 39 |
electrically active cell | 6.57e-09 | 39 |
neuron | 1.29e-08 | 33 |
neuronal stem cell | 1.29e-08 | 33 |
neuroblast | 1.29e-08 | 33 |
electrically signaling cell | 1.29e-08 | 33 |
ectodermal cell | 3.37e-08 | 44 |
neurectodermal cell | 3.37e-08 | 44 |
neural cell | 8.62e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.38e-20 | 54 |
central nervous system | 5.39e-20 | 73 |
neural tube | 3.38e-19 | 52 |
neural rod | 3.38e-19 | 52 |
future spinal cord | 3.38e-19 | 52 |
neural keel | 3.38e-19 | 52 |
nervous system | 3.56e-18 | 75 |
neurectoderm | 9.09e-17 | 64 |
neural plate | 9.09e-17 | 64 |
presumptive neural plate | 9.09e-17 | 64 |
ectoderm-derived structure | 2.22e-16 | 95 |
ectoderm | 2.22e-16 | 95 |
presumptive ectoderm | 2.22e-16 | 95 |
ecto-epithelium | 7.67e-16 | 73 |
brain | 2.04e-15 | 47 |
future brain | 2.04e-15 | 47 |
regional part of brain | 3.24e-15 | 46 |
anterior neural tube | 1.93e-13 | 40 |
gray matter | 4.65e-13 | 34 |
regional part of forebrain | 6.94e-13 | 39 |
forebrain | 6.94e-13 | 39 |
future forebrain | 6.94e-13 | 39 |
pre-chordal neural plate | 1.59e-12 | 49 |
structure with developmental contribution from neural crest | 3.29e-12 | 92 |
brain grey matter | 7.48e-10 | 29 |
regional part of telencephalon | 7.48e-10 | 29 |
telencephalon | 7.48e-10 | 29 |